Wall clock time and date at job start Tue Mar 31 2020 12:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48504 * 109.47364 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47348 * 299.99942 * 3 2 1 6 6 H 1.48506 * 109.46990 * 59.99732 * 3 2 1 7 7 C 1.37878 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00214 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00044 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00022 * 190.00376 * 10 9 7 12 12 C 1.50702 * 109.47223 * 163.84590 * 11 10 9 13 13 N 1.30970 * 126.42380 * 89.47665 * 12 11 10 14 14 C 1.35273 * 105.57332 * 179.89758 * 13 12 11 15 15 C 1.48228 * 126.42210 * 180.09968 * 14 13 12 16 16 C 1.39591 * 122.85015 * 180.29703 * 15 14 13 17 17 C 1.33158 * 113.74128 * 180.02562 * 16 15 14 18 18 S 1.75730 * 109.74624 * 359.97438 * 17 16 15 19 19 C 1.34468 * 122.85220 * 0.02562 * 15 14 13 20 20 N 1.30868 * 107.14993 * 0.37102 * 14 13 12 21 21 O 1.21290 * 110.07529 * 359.76852 * 20 14 13 22 22 C 1.46904 * 110.99746 * 66.05478 * 10 9 7 23 23 C 1.52991 * 109.47437 * 57.28386 * 22 10 9 24 24 C 1.53006 * 117.50155 * 244.36228 * 23 22 10 25 25 C 1.52998 * 117.50116 * 175.70285 * 23 22 10 26 26 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47736 * 300.00449 * 9 7 2 28 28 H 1.09006 * 109.47071 * 60.00702 * 9 7 2 29 29 H 1.09001 * 109.47120 * 283.84353 * 11 10 9 30 30 H 1.08998 * 109.47419 * 43.84255 * 11 10 9 31 31 H 1.08002 * 123.13262 * 359.97438 * 16 15 14 32 32 H 1.08008 * 125.12892 * 179.97438 * 17 16 15 33 33 H 1.08004 * 124.73364 * 359.97438 * 19 15 14 34 34 H 1.09002 * 109.47022 * 177.28937 * 22 10 9 35 35 H 1.09003 * 109.46500 * 297.28676 * 22 10 9 36 36 H 1.09005 * 115.55122 * 30.03276 * 23 22 10 37 37 H 1.08992 * 117.49551 * 0.02562 * 24 23 22 38 38 H 1.09000 * 117.49638 * 145.01947 * 24 23 22 39 39 H 1.09004 * 117.50107 * 214.98447 * 25 23 22 40 40 H 1.09002 * 117.49946 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0015 11 6 1.5210 -4.8936 -0.2357 12 6 2.5329 -5.9415 -0.6218 13 7 3.1857 -6.7304 0.1948 14 6 3.9731 -7.4976 -0.5934 15 6 4.9075 -8.5554 -0.1406 16 6 5.6921 -9.3008 -1.0223 17 6 6.4654 -10.2026 -0.4206 18 16 6.2175 -10.1320 1.3177 19 6 5.0753 -8.8749 1.1548 20 7 3.7594 -7.1268 -1.8301 21 8 2.9367 -6.2361 -1.8614 22 6 2.9718 -3.6535 1.2543 23 6 2.0086 -3.7602 2.4382 24 6 1.9680 -2.5904 3.4236 25 6 2.6179 -3.9145 3.8331 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5563 0.8919 28 1 0.6241 -2.5575 -0.8881 29 1 1.0056 -5.2038 0.6733 30 1 0.7966 -4.7737 -1.0412 31 1 5.6732 -9.1598 -2.0929 32 1 7.1427 -10.8759 -0.9249 33 1 4.5579 -8.4030 1.9770 34 1 3.6366 -4.5173 1.2478 35 1 3.5618 -2.7416 1.3470 36 1 1.0727 -4.2817 2.2373 37 1 2.6272 -1.7448 3.2282 38 1 1.0055 -2.3427 3.8713 39 1 2.0828 -4.5372 4.5500 40 1 3.7051 -3.9395 3.9074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174696959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:35 Heat of formation + Delta-G solvation = 120.924673 kcal Electronic energy + Delta-G solvation = -23942.464561 eV Core-core repulsion = 20466.856483 eV Total energy + Delta-G solvation = -3475.608078 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.54074 -39.74825 -39.30522 -36.93695 -36.35307 -34.77196 -33.42425 -30.72158 -29.72822 -28.78691 -26.63797 -26.17680 -24.04175 -23.51814 -23.13546 -23.08850 -21.06017 -20.11849 -19.14967 -18.79070 -18.34783 -18.22194 -17.11251 -16.66684 -16.48809 -16.08926 -15.96006 -15.44072 -14.66957 -14.55097 -14.45293 -14.18454 -13.94606 -13.69671 -13.56162 -13.32358 -13.06907 -12.87745 -12.80226 -12.68160 -12.58780 -12.43022 -12.26039 -12.16083 -11.95307 -11.93313 -11.42129 -11.33408 -11.04035 -10.67313 -10.52510 -9.92801 -9.32203 -9.11062 -8.14131 -6.19758 -0.36205 0.17584 0.59733 0.88152 0.90629 1.41442 1.44400 1.54962 1.76617 1.99086 2.43639 2.52841 2.98231 3.03563 3.20846 3.36647 3.85286 3.88725 3.99600 4.08456 4.12363 4.25376 4.36793 4.43427 4.48950 4.54826 4.64547 4.71222 4.79955 4.82807 4.97133 5.01000 5.11526 5.17924 5.23676 5.29865 5.33859 5.37001 5.41156 5.68894 6.06764 6.23623 6.52534 6.92289 7.07990 7.47535 8.96652 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.003044 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.713309 B = 9196.908568 C = 9862.448658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.212 3.788 10 N -0.539 5.539 11 C 0.136 3.864 12 C 0.218 3.782 13 N -0.483 5.483 14 C 0.224 3.776 15 C -0.071 4.071 16 C -0.131 4.131 17 C -0.221 4.221 18 S 0.257 5.743 19 C -0.216 4.216 20 N -0.399 5.399 21 O 0.072 5.928 22 C 0.101 3.899 23 C -0.181 4.181 24 C -0.174 4.174 25 C -0.155 4.155 26 H 0.262 0.738 27 H -0.004 1.004 28 H 0.013 0.987 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.202 0.798 33 H 0.174 0.826 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.900 -20.498 4.814 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.087 3.913 10 N -0.263 5.263 11 C 0.006 3.994 12 C -0.003 4.003 13 N -0.217 5.217 14 C -0.048 4.048 15 C -0.087 4.087 16 C -0.160 4.160 17 C -0.357 4.357 18 S 0.523 5.477 19 C -0.356 4.356 20 N -0.110 5.110 21 O 0.016 5.984 22 C -0.027 4.027 23 C -0.201 4.201 24 C -0.211 4.211 25 C -0.193 4.193 26 H 0.071 0.929 27 H 0.014 0.986 28 H 0.031 0.969 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.219 0.781 33 H 0.192 0.808 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.190 -21.591 5.310 24.891 hybrid contribution -1.393 2.286 -0.919 2.831 sum 9.798 -19.305 4.390 22.089 Atomic orbital electron populations 1.70038 1.07174 1.27455 1.52119 1.25605 0.95526 1.02118 0.95286 0.85586 0.79009 0.79992 0.77550 1.19413 1.20784 1.20621 1.21295 0.93125 0.90980 1.49309 0.92856 1.19438 0.89730 0.86912 0.95199 1.62151 1.27994 1.01463 1.34721 1.20669 0.89840 0.85464 1.03380 1.28908 0.96220 0.95986 0.79185 1.72024 1.10150 1.08382 1.31189 1.23908 0.98002 0.97919 0.84981 1.16613 1.00308 0.97999 0.93764 1.20148 0.97600 0.97108 1.01166 1.26022 1.06432 1.05268 0.97945 1.82892 1.33017 1.28044 1.03797 1.25397 1.05592 1.04679 0.99910 1.74878 1.08915 1.05475 1.21704 1.85260 1.41252 1.39064 1.32825 1.21603 0.94828 1.00794 0.85469 1.22738 1.01437 1.03652 0.92232 1.22822 1.02156 0.92316 1.03850 1.22959 1.00498 0.99276 0.96527 0.92882 0.98622 0.96879 0.88738 0.86284 0.83833 0.78113 0.80818 0.91403 0.92029 0.88648 0.90260 0.89662 0.87485 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.96 13.29 21.45 0.28 -52.68 16 2 C 0.01 0.71 5.46 84.66 0.46 1.17 16 3 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.51 -27.21 8.55 25.60 0.22 -26.99 16 8 H 0.05 2.90 7.09 -2.91 -0.02 2.88 16 9 C 0.21 10.23 4.50 85.55 0.38 10.62 16 10 N -0.54 -21.74 4.65 -905.36 -4.21 -25.94 16 11 C 0.14 4.48 5.48 85.56 0.47 4.95 16 12 C 0.22 7.26 7.35 88.36 0.65 7.91 16 13 N -0.48 -15.88 10.71 -302.37 -3.24 -19.11 16 14 C 0.22 7.21 7.88 137.19 1.08 8.29 16 15 C -0.07 -1.84 5.80 -21.16 -0.12 -1.96 16 16 C -0.13 -2.78 10.03 21.45 0.22 -2.57 16 17 C -0.22 -3.16 11.20 66.68 0.75 -2.41 16 18 S 0.26 3.41 23.09 -56.49 -1.30 2.10 16 19 C -0.22 -4.52 10.67 66.96 0.71 -3.81 16 20 N -0.40 -13.71 12.10 -58.97 -0.71 -14.43 16 21 O 0.07 2.51 11.29 74.65 0.84 3.35 16 22 C 0.10 3.80 5.28 86.30 0.46 4.26 16 23 C -0.18 -6.13 3.93 -10.80 -0.04 -6.17 16 24 C -0.17 -5.96 10.18 30.62 0.31 -5.65 16 25 C -0.16 -4.30 10.25 30.62 0.31 -3.98 16 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.00 -0.20 6.70 -2.39 -0.02 -0.22 16 28 H 0.01 0.68 7.86 -2.38 -0.02 0.66 16 29 H 0.09 2.85 6.09 -2.39 -0.01 2.83 16 30 H 0.12 3.60 7.80 -2.39 -0.02 3.58 16 31 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.07 2.45 6.74 -2.39 -0.02 2.44 16 35 H 0.06 2.58 6.67 -2.39 -0.02 2.56 16 36 H 0.10 3.22 6.28 -2.38 -0.01 3.20 16 37 H 0.08 2.97 8.03 -2.39 -0.02 2.95 16 38 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -63.03 352.74 0.62 -62.41 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.07 Total: 15.19 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 5.86 Total: -16.35 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -7.87 Total: -112.16 kcal Atomic # 8 Polarization: 2.51 SS G_CDS: 0.84 Total: 3.35 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.30 Total: 2.10 kcal Total: -63.03 0.62 -62.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174696959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.337 kcal (2) G-P(sol) polarization free energy of solvation -63.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds