Wall clock time and date at job start Tue Mar 31 2020 12:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.28006 * 124.77994 * 59.69222 * 4 2 1 6 6 C 1.34778 * 118.11775 * 179.81405 * 5 4 2 7 7 C 1.41178 * 128.79791 * 180.19917 * 6 5 4 8 8 C 1.36014 * 120.65426 * 180.25875 * 7 6 5 9 9 C 1.39400 * 120.70665 * 0.02562 * 8 7 6 10 10 N 1.39833 * 120.08365 * 180.02562 * 9 8 7 11 11 C 1.46505 * 120.00230 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47226 * 180.02562 * 11 10 9 13 13 O 1.21291 * 120.00058 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99885 * 180.02562 * 12 11 10 15 15 C 1.37094 * 119.99952 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00204 * 0.02562 * 15 14 12 17 17 C 1.38950 * 119.99889 * 179.97438 * 15 14 12 18 18 N 1.31410 * 119.99741 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00084 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47286 * 89.99882 * 19 17 15 21 21 H 1.48504 * 109.47037 * 209.99916 * 19 17 15 22 22 H 1.48498 * 109.46977 * 329.99620 * 19 17 15 23 23 C 1.38241 * 119.83026 * 359.97438 * 9 8 7 24 24 C 1.39365 * 119.97208 * 359.97438 * 23 9 8 25 25 S 1.75817 * 124.77862 * 240.00051 * 4 2 1 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.08000 * 119.67552 * 0.28177 * 7 6 5 34 34 H 1.07997 * 119.64997 * 180.02562 * 8 7 6 35 35 H 0.97002 * 119.99979 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.46754 * 300.00419 * 11 10 9 37 37 H 1.09002 * 109.46626 * 60.00034 * 11 10 9 38 38 H 0.97004 * 120.00013 * 359.97438 * 14 12 11 39 39 H 0.97003 * 119.99967 * 180.02562 * 18 17 15 40 40 H 1.08006 * 120.01416 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7755 -0.3568 -2.4337 6 6 2.2993 -1.0893 -3.4365 7 6 2.1674 -0.9037 -4.8298 8 6 2.7697 -1.7552 -5.7029 9 6 3.5291 -2.8290 -5.2408 10 7 4.1430 -3.6960 -6.1500 11 6 3.9881 -3.4769 -7.5903 12 6 4.7415 -4.5421 -8.3444 13 8 5.3478 -5.4002 -7.7384 14 7 4.7416 -4.5413 -9.6922 15 6 5.4274 -5.5100 -10.3782 16 1 5.9673 -6.2741 -9.8387 17 6 5.4270 -5.5095 -11.7677 18 7 6.0848 -6.4378 -12.4253 19 14 4.4926 -4.1883 -12.7009 20 1 5.3880 -3.0298 -12.9482 21 1 4.0233 -4.7371 -13.9986 22 1 3.3237 -3.7480 -11.8979 23 6 3.6746 -3.0338 -3.8814 24 6 3.0630 -2.1672 -2.9774 25 16 3.0474 -2.1458 -1.2158 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.5829 -0.0773 -5.2062 34 1 2.6583 -1.5978 -6.7655 35 1 4.6715 -4.4426 -5.8271 36 1 2.9314 -3.5245 -7.8533 37 1 4.3842 -2.4960 -7.8532 38 1 4.2563 -3.8552 -10.1768 39 1 6.0849 -6.4372 -13.3953 40 1 4.2627 -3.8645 -3.5201 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175124129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:53 Heat of formation + Delta-G solvation = 12.797368 kcal Electronic energy + Delta-G solvation = -22670.875942 eV Core-core repulsion = 19190.579112 eV Total energy + Delta-G solvation = -3480.296830 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39680 -38.92073 -37.86850 -35.69778 -34.31964 -33.57415 -31.89148 -31.22619 -29.06477 -27.47888 -26.95560 -24.94427 -24.06107 -23.24428 -21.83755 -19.87488 -19.41594 -18.63642 -18.52711 -17.45570 -16.08079 -15.90043 -15.45805 -15.21589 -15.16187 -14.80398 -14.73229 -14.40222 -14.00684 -13.72560 -13.49298 -13.31152 -12.96398 -12.88175 -12.75139 -12.47002 -12.29890 -12.18648 -11.89284 -11.85296 -11.43199 -11.32247 -11.28439 -10.85357 -10.72071 -10.17127 -10.13204 -9.78835 -9.69219 -9.62828 -8.86545 -8.38464 -8.32468 -7.27526 -6.47327 -4.00473 0.53900 1.13791 1.21238 1.67777 2.38939 2.91406 2.96386 3.05794 3.34478 3.46040 3.71039 3.74118 3.96324 4.42257 4.48923 4.62344 4.72988 4.75986 5.03934 5.05878 5.10499 5.20110 5.32668 5.35869 5.42571 5.51131 5.52482 5.60846 5.62075 5.64982 5.70900 5.87196 5.90926 5.99166 6.16120 6.19025 6.45887 7.15752 7.39323 7.62885 7.75581 7.95181 8.37288 8.74767 9.21846 9.54878 10.64780 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.036030 B = 0.002167 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.942744 B =12917.846058 C =13503.727376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.014 4.014 3 C -0.140 4.140 4 C 0.103 3.897 5 N -0.442 5.442 6 C 0.007 3.993 7 C -0.011 4.011 8 C -0.178 4.178 9 C 0.255 3.745 10 N -0.714 5.714 11 C 0.106 3.894 12 C 0.437 3.563 13 O -0.576 6.576 14 N -0.575 5.575 15 C -0.312 4.312 16 H 0.121 0.879 17 C 0.045 3.955 18 N -0.872 5.872 19 Si 0.881 3.119 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.268 1.268 23 C -0.175 4.175 24 C -0.100 4.100 25 S 0.016 5.984 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.415 0.585 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.374 0.626 39 H 0.276 0.724 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.846 15.377 20.618 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 C -0.199 4.199 4 C -0.184 4.184 5 N -0.153 5.153 6 C -0.113 4.113 7 C -0.033 4.033 8 C -0.201 4.201 9 C 0.143 3.857 10 N -0.343 5.343 11 C -0.022 4.022 12 C 0.223 3.777 13 O -0.460 6.460 14 N -0.213 5.213 15 C -0.440 4.440 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.511 5.511 19 Si 0.707 3.293 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.193 1.193 23 C -0.205 4.205 24 C -0.220 4.220 25 S 0.271 5.729 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.207 0.793 39 H 0.087 0.913 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.273 14.554 21.220 27.706 hybrid contribution -0.464 0.629 -1.816 1.977 sum -10.737 15.182 19.404 26.875 Atomic orbital electron populations 1.21813 0.92861 1.02439 1.02776 1.19846 0.96785 0.95892 0.91122 1.21813 1.01295 0.94008 1.02776 1.27219 0.99414 0.96087 0.95634 1.65874 1.21636 1.29191 0.98567 1.18883 1.03391 0.95067 0.93912 1.20162 0.96437 0.97898 0.88789 1.20352 1.02736 0.96608 1.00447 1.17653 0.90147 0.89181 0.88670 1.44620 1.54965 1.31317 1.03412 1.21063 1.00756 0.99115 0.81273 1.19557 0.86835 0.88363 0.82991 1.90558 1.47835 1.40198 1.67400 1.42119 1.46424 1.27651 1.05109 1.19437 1.27766 1.07180 0.89620 0.86098 1.25083 0.97244 0.97356 0.96265 1.69617 1.40287 1.32652 1.08531 0.86656 0.80099 0.81942 0.80652 1.19372 1.19921 1.19318 1.19510 1.08144 1.02879 0.89950 1.23172 1.02777 1.00101 0.95921 1.84913 1.55031 1.31813 1.01148 0.91668 0.92441 0.91458 0.89279 0.91665 0.92436 0.91467 0.84902 0.84612 0.74507 0.90123 0.90106 0.79315 0.91308 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.16 37.16 0.34 -0.63 16 2 C -0.01 -0.11 3.37 -91.77 -0.31 -0.42 16 3 C -0.14 -0.97 9.17 37.16 0.34 -0.63 16 4 C 0.10 1.15 6.07 -13.87 -0.08 1.06 16 5 N -0.44 -5.74 10.53 -7.77 -0.08 -5.83 16 6 C 0.01 0.09 6.95 -84.85 -0.59 -0.50 16 7 C -0.01 -0.14 10.04 -39.26 -0.39 -0.53 16 8 C -0.18 -2.13 9.22 -39.95 -0.37 -2.50 16 9 C 0.25 3.46 6.65 -83.77 -0.56 2.90 16 10 N -0.71 -10.62 5.71 -59.81 -0.34 -10.96 16 11 C 0.11 1.60 5.39 -5.19 -0.03 1.57 16 12 C 0.44 9.16 7.85 -10.99 -0.09 9.08 16 13 O -0.58 -14.39 15.24 5.55 0.08 -14.31 16 14 N -0.58 -12.79 5.09 -10.97 -0.06 -12.85 16 15 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 16 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 17 C 0.05 1.18 5.50 -17.47 -0.10 1.08 16 18 N -0.87 -24.51 13.96 55.50 0.77 -23.74 16 19 Si 0.88 18.32 27.74 -169.99 -4.71 13.61 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.00 6.52 56.52 0.37 -4.63 16 23 C -0.17 -2.37 9.92 -39.16 -0.39 -2.76 16 24 C -0.10 -1.37 6.53 -38.56 -0.25 -1.62 16 25 S 0.02 0.19 23.37 -107.50 -2.51 -2.32 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.14 1.36 6.72 -52.49 -0.35 1.00 16 35 H 0.42 6.70 7.45 -40.82 -0.30 6.39 16 36 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 37 H 0.08 1.03 7.95 -51.93 -0.41 0.62 16 38 H 0.37 7.15 5.76 -40.82 -0.24 6.92 16 39 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -31.38 352.97 -9.23 -40.61 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.08 Total: 12.91 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.62 Total: -2.45 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.30 Total: -53.37 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.31 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.71 Total: 13.61 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.51 Total: -2.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.38 -9.23 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175124129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.405 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds