Wall clock time and date at job start Tue Mar 31 2020 12:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00448 * 2 1 4 4 H 1.48497 * 109.47481 * 240.00183 * 3 2 1 5 5 H 1.48502 * 109.46776 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47268 * 120.00018 * 3 2 1 7 7 C 1.37882 * 119.99442 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99644 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00309 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00085 * 170.00224 * 10 9 7 12 12 C 1.50700 * 109.46980 * 195.17419 * 11 10 9 13 13 N 1.30041 * 126.17179 * 84.65254 * 12 11 10 14 14 O 1.21288 * 110.53347 * 179.97438 * 13 12 11 15 15 C 1.34262 * 109.68749 * 359.97438 * 14 13 12 16 16 C 1.47415 * 126.70162 * 179.97438 * 15 14 13 17 17 C 1.44347 * 123.32563 * 359.97438 * 16 15 14 18 18 C 1.32925 * 112.98620 * 179.97438 * 17 16 15 19 19 S 1.75546 * 110.34795 * 0.02562 * 18 17 16 20 20 C 1.34819 * 123.33316 * 179.68887 * 16 15 14 21 21 N 1.32333 * 106.60434 * 359.76187 * 15 14 13 22 22 C 1.46902 * 111.00178 * 293.95689 * 10 9 7 23 23 C 1.52997 * 109.47095 * 294.88373 * 22 10 9 24 24 C 1.52998 * 117.49493 * 245.60140 * 23 22 10 25 25 C 1.53005 * 117.49639 * 176.94640 * 23 22 10 26 26 H 0.97001 * 119.99657 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47479 * 300.00266 * 9 7 2 28 28 H 1.09006 * 109.46614 * 60.00648 * 9 7 2 29 29 H 1.08996 * 109.47108 * 315.17596 * 11 10 9 30 30 H 1.09000 * 109.46965 * 75.17674 * 11 10 9 31 31 H 1.08000 * 123.50765 * 359.97108 * 17 16 15 32 32 H 1.07996 * 124.82393 * 179.97438 * 18 17 16 33 33 H 1.08000 * 124.52152 * 359.97222 * 20 16 15 34 34 H 1.09000 * 109.46703 * 54.88215 * 22 10 9 35 35 H 1.09008 * 109.46848 * 174.88182 * 22 10 9 36 36 H 1.08996 * 115.55286 * 31.26863 * 23 22 10 37 37 H 1.09002 * 117.50552 * 0.02562 * 24 23 22 38 38 H 1.09002 * 117.50006 * 145.02361 * 24 23 22 39 39 H 1.09004 * 117.49351 * 214.97644 * 25 23 22 40 40 H 1.08994 * 117.49672 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0018 11 6 1.5211 -4.8937 0.2363 12 6 2.5361 -5.9474 0.5974 13 7 3.0192 -6.1733 1.7834 14 8 3.8161 -7.0871 1.7512 15 6 3.9224 -7.5505 0.4956 16 6 4.7838 -8.6541 0.0338 17 6 5.6538 -9.4012 0.9105 18 6 6.3370 -10.3502 0.2784 19 16 5.9326 -10.3585 -1.4298 20 6 4.8327 -9.0691 -1.2480 21 7 3.0995 -6.8264 -0.2457 22 6 2.9698 -3.6536 -1.2557 23 6 2.0246 -3.9553 -2.4203 24 6 2.2151 -5.2813 -3.1593 25 6 2.6208 -3.9662 -3.8294 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 0.8896 28 1 0.6240 -2.5567 -0.8904 29 1 0.8103 -4.7783 1.0545 30 1 0.9899 -5.1951 -0.6666 31 1 5.7406 -9.2091 1.9697 32 1 7.0415 -11.0201 0.7487 33 1 4.2536 -8.6406 -2.0526 34 1 3.4497 -2.6884 -1.4178 35 1 3.7306 -4.4318 -1.1941 36 1 1.0062 -3.5837 -2.3076 37 1 3.0135 -5.9390 -2.8155 38 1 1.3220 -5.7820 -3.5332 39 1 1.9944 -3.6022 -4.6437 40 1 3.6863 -3.7581 -3.9266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177029271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:27 Heat of formation + Delta-G solvation = 138.280070 kcal Electronic energy + Delta-G solvation = -24038.250240 eV Core-core repulsion = 20563.394748 eV Total energy + Delta-G solvation = -3474.855492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.26086 -38.25177 -38.11016 -35.82141 -34.83890 -32.74603 -32.10210 -29.87161 -28.15290 -27.08903 -25.50644 -24.49538 -22.85638 -22.12589 -21.89080 -21.62333 -19.83246 -19.06851 -18.16250 -17.87672 -16.89719 -16.30779 -16.15993 -15.48166 -14.98004 -14.36773 -14.14228 -13.94616 -13.65760 -13.60848 -13.22946 -13.16609 -12.93581 -12.20467 -12.13220 -11.79314 -11.63381 -11.49553 -11.32363 -11.22139 -11.01492 -10.98029 -10.79346 -10.73217 -10.55336 -10.25046 -9.99544 -9.78843 -9.39262 -9.33264 -9.17454 -8.52784 -8.43908 -7.33749 -6.03511 -4.04171 0.35575 1.15464 1.26057 1.50918 2.19421 2.77697 2.98324 3.34266 3.37944 3.41376 3.70754 4.27585 4.29394 4.44261 4.52943 4.89860 5.00587 5.11467 5.20735 5.21334 5.32687 5.42283 5.52527 5.54462 5.69133 5.75028 5.83499 5.95401 5.98587 6.01969 6.10092 6.21510 6.25985 6.38633 6.49320 6.52315 6.87370 7.21023 7.31194 7.74945 8.00573 8.12615 8.42442 8.47491 9.01533 9.59408 11.07383 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.003062 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.016487 B = 9141.213910 C = 9765.556504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.526 5.526 11 C 0.137 3.863 12 C 0.201 3.799 13 N -0.370 5.370 14 O 0.082 5.918 15 C 0.222 3.778 16 C -0.047 4.047 17 C -0.104 4.104 18 C -0.230 4.230 19 S 0.192 5.808 20 C -0.187 4.187 21 N -0.462 5.462 22 C 0.096 3.904 23 C -0.173 4.173 24 C -0.178 4.178 25 C -0.180 4.180 26 H 0.262 0.738 27 H 0.031 0.969 28 H 0.002 0.998 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.655 -22.595 -3.713 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.250 5.250 11 C 0.007 3.993 12 C -0.073 4.073 13 N -0.076 5.076 14 O 0.021 5.979 15 C 0.003 3.997 16 C -0.064 4.064 17 C -0.134 4.134 18 C -0.365 4.365 19 S 0.457 5.543 20 C -0.327 4.327 21 N -0.197 5.197 22 C -0.032 4.032 23 C -0.193 4.193 24 C -0.215 4.215 25 C -0.218 4.218 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.020 0.980 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.196 0.804 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.809 -22.618 -4.167 25.412 hybrid contribution -0.623 1.709 0.559 1.903 sum 10.186 -20.909 -3.608 23.536 Atomic orbital electron populations 1.69939 1.06011 1.26919 1.50926 1.24946 0.94854 0.99213 0.95393 0.86563 0.79458 0.82753 0.78671 1.20260 1.21356 1.20180 1.21045 0.93412 0.89713 1.50191 0.91990 1.19802 0.90087 0.86732 0.96505 1.62313 1.28405 1.01244 1.33028 1.20350 0.90407 0.86977 1.01605 1.25845 0.99772 0.97475 0.84167 1.74650 1.06023 1.03689 1.23191 1.85419 1.45817 1.35836 1.30817 1.25662 0.96326 0.96219 0.81492 1.17203 1.00185 0.96117 0.92851 1.21245 0.95944 0.95158 1.01062 1.25529 1.07734 1.05550 0.97672 1.83194 1.35235 1.29234 1.06661 1.25249 1.04561 1.02530 1.00348 1.72180 1.09907 1.06970 1.30608 1.21692 0.94500 1.01556 0.85488 1.23069 1.02227 1.00140 0.93822 1.22982 1.02879 0.90787 1.04825 1.22810 1.00915 1.01823 0.96252 0.92851 0.95063 0.97996 0.88868 0.91560 0.82596 0.80977 0.80353 0.89494 0.92845 0.87470 0.88636 0.89991 0.89563 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.12 8.44 -34.44 -0.29 -14.41 16 8 H 0.06 1.74 7.14 -52.48 -0.37 1.36 16 9 C 0.19 4.94 4.57 -4.98 -0.02 4.92 16 10 N -0.53 -11.56 4.65 -237.52 -1.11 -12.66 16 11 C 0.14 2.61 5.45 -4.97 -0.03 2.59 16 12 C 0.20 3.64 6.91 -156.57 -1.08 2.56 16 13 N -0.37 -6.78 12.14 31.24 0.38 -6.40 16 14 O 0.08 1.28 11.33 16.49 0.19 1.47 16 15 C 0.22 3.17 8.14 -13.92 -0.11 3.06 16 16 C -0.05 -0.51 5.94 -104.97 -0.62 -1.13 16 17 C -0.10 -0.86 10.37 -39.02 -0.40 -1.26 16 18 C -0.23 -1.44 11.14 28.90 0.32 -1.11 16 19 S 0.19 1.21 23.03 -107.50 -2.48 -1.26 16 20 C -0.19 -1.70 10.67 29.52 0.31 -1.39 16 21 N -0.46 -7.44 11.10 -10.18 -0.11 -7.55 16 22 C 0.10 1.93 5.30 -3.82 -0.02 1.91 16 23 C -0.17 -3.14 3.99 -90.62 -0.36 -3.50 16 24 C -0.18 -2.69 10.01 -26.70 -0.27 -2.95 16 25 C -0.18 -2.80 10.25 -26.69 -0.27 -3.08 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.86 7.87 -51.93 -0.41 0.45 16 28 H 0.00 0.06 6.10 -51.93 -0.32 -0.25 16 29 H 0.09 1.77 7.83 -51.93 -0.41 1.36 16 30 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 31 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.09 1.91 6.73 -51.93 -0.35 1.56 16 35 H 0.05 1.04 7.02 -51.92 -0.36 0.67 16 36 H 0.11 2.17 6.26 -51.93 -0.33 1.85 16 37 H 0.10 1.43 7.91 -51.93 -0.41 1.02 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -30.94 353.33 -10.00 -40.94 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.97 Total: 1.40 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.95 Total: -12.28 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.10 Total: -52.37 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.19 Total: 1.47 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.48 Total: -1.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.94 -10.00 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177029271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.219 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds