Wall clock time and date at job start Tue Mar 31 2020 12:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38123 * 120.02070 * 2 1 4 4 C 1.38463 * 120.03774 * 179.97438 * 3 2 1 5 5 F 1.35111 * 119.95489 * 179.97438 * 4 3 2 6 6 C 1.38501 * 120.08557 * 0.02562 * 4 3 2 7 7 C 1.38088 * 120.03918 * 359.97438 * 6 4 3 8 8 C 1.38806 * 120.01869 * 179.71643 * 2 1 3 9 9 N 1.40277 * 120.04080 * 0.02927 * 8 2 1 10 10 C 1.35023 * 126.60010 * 186.01991 * 9 8 2 11 11 C 1.36703 * 106.78839 * 179.88139 * 10 9 8 12 12 C 1.47375 * 125.77950 * 180.17934 * 11 10 9 13 13 O 1.21520 * 119.99820 * 0.26858 * 12 11 10 14 14 O 1.34756 * 119.99962 * 180.26174 * 12 11 10 15 15 C 1.45200 * 116.99588 * 180.02562 * 14 12 11 16 16 C 1.53009 * 109.46821 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.46894 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99979 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99640 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00197 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99745 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47300 * 89.99747 * 21 19 17 23 23 H 1.48501 * 109.46546 * 209.99581 * 21 19 17 24 24 H 1.48496 * 109.47127 * 329.99405 * 21 19 17 25 25 N 1.34450 * 108.44328 * 0.38661 * 11 10 9 26 26 N 1.28747 * 109.56528 * 359.75953 * 25 11 10 27 27 H 1.08997 * 109.46699 * 96.36075 * 1 2 3 28 28 H 1.08998 * 109.47296 * 336.35648 * 1 2 3 29 29 H 1.08999 * 109.46774 * 216.35595 * 1 2 3 30 30 H 1.08003 * 119.97973 * 359.94756 * 3 2 1 31 31 H 1.08000 * 119.98377 * 179.97438 * 6 4 3 32 32 H 1.07994 * 120.02071 * 179.97438 * 7 6 4 33 33 H 1.08002 * 126.60693 * 0.02562 * 10 9 8 34 34 H 1.08999 * 109.47468 * 299.99773 * 15 14 12 35 35 H 1.08993 * 109.47857 * 60.00294 * 15 14 12 36 36 H 1.08999 * 109.46841 * 300.00067 * 16 15 14 37 37 H 1.09000 * 109.46751 * 60.00181 * 16 15 14 38 38 H 0.96999 * 120.00244 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1959 0.0000 4 6 3.5827 1.1963 0.0005 5 9 4.2570 2.3672 0.0000 6 6 4.2774 -0.0019 0.0005 7 6 3.5899 -1.1995 0.0005 8 6 2.2015 -1.2019 0.0059 9 7 1.5013 -2.4174 0.0113 10 6 2.0336 -3.6525 0.1311 11 6 0.9922 -4.5371 0.0889 12 6 1.1026 -6.0033 0.1878 13 8 2.1927 -6.5227 0.3245 14 8 -0.0053 -6.7680 0.1269 15 6 0.1788 -8.2045 0.2318 16 6 -1.1807 -8.9008 0.1417 17 6 -0.9897 -10.3917 0.2499 18 1 0.0021 -10.8016 0.3712 19 6 -2.0811 -11.2323 0.1940 20 7 -3.2888 -10.7331 0.0467 21 14 -1.8443 -13.0804 0.3288 22 1 -1.9176 -13.4861 1.7554 23 1 -2.9106 -13.7732 -0.4382 24 1 -0.5167 -13.4510 -0.2237 25 7 -0.1493 -3.8432 -0.0628 26 7 0.1148 -2.5841 -0.1126 27 1 -0.3632 -0.1139 -1.0213 28 1 -0.3634 0.9414 0.4121 29 1 -0.3633 -0.8276 0.6092 30 1 1.6581 2.1313 -0.0009 31 1 5.3574 0.0004 0.0005 32 1 4.1318 -2.1336 0.0001 33 1 3.0803 -3.8948 0.2415 34 1 0.8177 -8.5493 -0.5812 35 1 0.6464 -8.4422 1.1872 36 1 -1.8200 -8.5560 0.9544 37 1 -1.6479 -8.6631 -0.8140 38 1 -4.0567 -11.3245 0.0077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179697710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:40 Heat of formation + Delta-G solvation = -2.559277 kcal Electronic energy + Delta-G solvation = -24657.727841 eV Core-core repulsion = 20610.551920 eV Total energy + Delta-G solvation = -4047.175920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.52066 -42.80552 -40.08634 -39.58327 -36.16419 -34.95594 -33.67636 -33.31650 -31.41332 -30.43300 -29.92924 -27.80431 -25.71693 -24.58011 -23.81602 -22.77260 -22.01516 -21.03964 -20.54883 -19.01439 -17.84978 -17.29631 -16.87118 -16.71498 -16.20744 -16.19602 -16.05288 -15.70519 -15.62523 -14.70535 -14.50715 -14.15411 -14.07462 -14.02111 -13.58227 -13.41814 -13.26501 -12.78857 -12.69123 -12.34861 -11.86837 -11.64585 -11.51493 -11.42393 -11.23643 -11.03959 -10.76329 -10.73741 -10.45511 -9.87850 -9.68506 -9.64586 -9.61489 -9.27941 -8.91348 -8.41603 -6.07298 -4.11973 -0.17105 0.40986 1.11173 1.43623 1.47810 2.78822 2.92561 3.08059 3.30419 3.36455 3.40254 3.50732 3.73515 3.86937 3.98730 4.19874 4.34428 4.39937 4.46412 4.69140 4.80182 4.86082 5.01928 5.06140 5.29001 5.30804 5.32364 5.39076 5.48675 5.71210 5.85071 5.88195 6.05069 6.09054 6.27779 6.63846 6.84008 7.53733 7.62024 7.66425 7.88408 8.11716 8.26134 8.93620 9.52106 11.04093 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.042047 B = 0.001989 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.760715 B =14074.684421 C =14710.904050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.034 4.034 3 C -0.137 4.137 4 C 0.111 3.889 5 F -0.132 7.132 6 C -0.137 4.137 7 C -0.089 4.089 8 C 0.119 3.881 9 N -0.311 5.311 10 C 0.094 3.906 11 C -0.064 4.064 12 C 0.548 3.452 13 O -0.511 6.511 14 O -0.334 6.334 15 C 0.075 3.925 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 N -0.168 5.168 26 N -0.055 5.055 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.212 0.788 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.762 27.062 -0.073 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.036 4.036 3 C -0.157 4.157 4 C 0.091 3.909 5 F -0.110 7.110 6 C -0.157 4.157 7 C -0.110 4.110 8 C 0.027 3.973 9 N -0.088 5.088 10 C -0.059 4.059 11 C -0.200 4.200 12 C 0.389 3.611 13 O -0.400 6.400 14 O -0.249 6.249 15 C 0.002 3.998 16 C -0.013 4.013 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 N -0.042 5.042 26 N -0.034 5.034 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.228 0.772 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.511 27.468 -0.218 30.611 hybrid contribution 1.343 -1.286 0.180 1.868 sum 14.854 26.181 -0.038 30.101 Atomic orbital electron populations 1.21197 0.88296 1.04236 1.04465 1.19614 0.97865 0.89697 0.96443 1.20996 0.92158 0.98977 1.03539 1.17763 0.90094 0.81554 1.01496 1.91549 1.80203 1.45702 1.93573 1.20973 1.01465 0.90030 1.03209 1.20799 0.90812 0.99636 0.99746 1.17496 0.90484 0.82377 1.06977 1.47582 1.08239 1.04667 1.48351 1.23304 1.01492 0.83030 0.98074 1.20508 0.89138 0.93824 1.16540 1.19352 0.83297 0.85098 0.73309 1.90849 1.28414 1.74036 1.46716 1.86688 1.33799 1.23131 1.81240 1.23775 1.03097 0.71835 1.01052 1.19187 0.89116 0.93913 0.99112 1.20965 0.93631 0.90348 1.51518 0.92217 1.24990 0.95069 0.99218 0.94922 1.69980 0.98210 1.35323 1.49152 0.86470 0.77938 0.84712 0.78163 1.20511 1.21080 1.19739 1.74893 1.23730 0.98245 1.07363 1.82221 0.87978 1.10383 1.22785 0.89592 0.90958 0.88425 0.83245 0.83174 0.83484 0.77187 0.91980 0.91979 0.95172 0.95162 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.75 36.01 0.32 -0.60 16 2 C -0.03 -0.25 5.89 -104.45 -0.62 -0.86 16 3 C -0.14 -0.81 9.65 -39.54 -0.38 -1.19 16 4 C 0.11 0.68 7.30 -39.40 -0.29 0.39 16 5 F -0.13 -0.91 17.27 2.25 0.04 -0.87 16 6 C -0.14 -0.69 10.02 -39.54 -0.40 -1.08 16 7 C -0.09 -0.50 9.47 -39.41 -0.37 -0.87 16 8 C 0.12 0.95 6.67 -83.56 -0.56 0.40 16 9 N -0.31 -3.26 3.80 -10.40 -0.04 -3.30 16 10 C 0.09 1.00 10.59 -16.70 -0.18 0.82 16 11 C -0.06 -0.96 7.02 -83.56 -0.59 -1.54 16 12 C 0.55 9.85 7.96 34.45 0.27 10.13 16 13 O -0.51 -9.54 16.65 -19.28 -0.32 -9.86 16 14 O -0.33 -7.00 10.23 -40.64 -0.42 -7.42 16 15 C 0.07 1.67 5.41 37.16 0.20 1.87 16 16 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 17 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 N -0.17 -2.67 12.39 32.84 0.41 -2.27 16 26 N -0.05 -0.72 9.93 60.35 0.60 -0.12 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 29 H 0.10 0.91 5.71 -51.93 -0.30 0.61 16 30 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 31 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 32 H 0.15 0.49 6.85 -52.49 -0.36 0.13 16 33 H 0.21 1.39 7.17 -52.49 -0.38 1.01 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -33.11 343.70 -5.93 -39.04 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -3.95 Total: -5.39 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.14 Total: -5.60 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 1.70 Total: -31.51 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.74 Total: -17.28 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.11 -5.93 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179697710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.480 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds