Wall clock time and date at job start Tue Mar 31 2020 12:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47333 * 2 1 4 4 C 1.52999 * 109.47066 * 240.00117 * 2 1 3 5 5 S 1.81404 * 109.47172 * 120.00110 * 2 1 3 6 6 C 1.76202 * 102.99839 * 60.00053 * 5 2 1 7 7 C 1.39137 * 119.64458 * 180.02562 * 6 5 2 8 8 C 1.39564 * 118.91430 * 179.72406 * 7 6 5 9 9 C 1.48010 * 120.88203 * 180.25534 * 8 7 6 10 10 O 1.21562 * 119.99996 * 132.74055 * 9 8 7 11 11 N 1.34781 * 120.00090 * 312.72992 * 9 8 7 12 12 C 1.36801 * 120.00078 * 185.01999 * 11 9 8 13 13 H 1.07997 * 119.99777 * 8.30266 * 12 11 9 14 14 C 1.39101 * 119.99929 * 188.29882 * 12 11 9 15 15 N 1.31332 * 119.99758 * 16.51954 * 14 12 11 16 16 Si 1.86799 * 120.00070 * 196.51562 * 14 12 11 17 17 H 1.48497 * 109.46926 * 60.00067 * 16 14 12 18 18 H 1.48493 * 109.47183 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47140 * 300.00382 * 16 14 12 20 20 C 1.46500 * 119.99670 * 5.02805 * 11 9 8 21 21 C 1.47194 * 109.47589 * 94.79299 * 20 11 9 22 22 N 6.45335 * 113.55571 * 123.18245 * 2 1 3 23 23 C 1.40131 * 118.23031 * 0.26966 * 8 7 6 24 24 C 1.37901 * 119.17942 * 0.02562 * 23 8 7 25 25 N 1.31935 * 121.01214 * 359.97438 * 24 23 8 26 26 H 1.09001 * 109.46646 * 300.00103 * 1 2 3 27 27 H 1.09002 * 109.47128 * 59.99477 * 1 2 3 28 28 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47657 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47440 * 300.00332 * 3 2 1 31 31 H 1.09001 * 109.47338 * 60.00321 * 3 2 1 32 32 H 1.08998 * 109.47313 * 299.99842 * 4 2 1 33 33 H 1.08996 * 109.47088 * 59.99862 * 4 2 1 34 34 H 1.09003 * 109.47188 * 180.02562 * 4 2 1 35 35 H 1.08004 * 120.54416 * 359.97438 * 7 6 5 36 36 H 0.96999 * 119.99740 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.46920 * 214.79438 * 20 11 9 38 38 H 1.09003 * 109.47300 * 334.78949 * 20 11 9 39 39 H 1.08004 * 120.40805 * 179.97438 * 23 8 7 40 40 H 1.08004 * 119.49404 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2492 5 16 2.1347 -0.8552 1.4811 6 6 1.4574 -2.4727 1.3091 7 6 1.7135 -3.4331 2.2827 8 6 1.1647 -4.7077 2.1341 9 6 1.4043 -5.7608 3.1462 10 8 0.4752 -6.4228 3.5662 11 7 2.6525 -5.9859 3.6020 12 6 2.8907 -7.0251 4.4591 13 1 2.1117 -7.7441 4.6656 14 6 4.1362 -7.1558 5.0646 15 7 4.9671 -6.1390 5.0835 16 14 4.6268 -8.7777 5.8510 17 1 4.6130 -9.8500 4.8238 18 1 5.9922 -8.6577 6.4222 19 1 3.6655 -9.1148 6.9314 20 6 3.7542 -5.1174 3.1797 21 6 3.9537 -4.0562 4.1799 22 7 4.1090 -3.2376 4.9510 23 6 0.3810 -4.9640 1.0010 24 6 0.1814 -3.9573 0.0799 25 7 0.7154 -2.7631 0.2516 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.3236 -3.1950 3.1415 36 1 5.8354 -6.2300 5.5060 37 1 4.6666 -5.7066 3.0882 38 1 3.5138 -4.6681 2.2161 39 1 -0.0604 -5.9381 0.8505 40 1 -0.4214 -4.1493 -0.7955 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181238258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:18 Heat of formation + Delta-G solvation = 50.171148 kcal Electronic energy + Delta-G solvation = -24485.229731 eV Core-core repulsion = 21006.553550 eV Total energy + Delta-G solvation = -3478.676181 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24908 -38.49045 -36.28111 -35.98069 -34.42047 -32.70602 -31.66515 -31.08380 -27.62876 -27.42681 -27.32102 -25.75233 -23.59995 -23.48581 -20.68118 -20.14947 -18.18576 -17.65821 -16.65731 -16.32999 -16.00121 -15.87151 -15.25421 -14.70793 -14.39471 -14.30047 -14.24085 -13.99390 -13.85068 -13.37065 -13.08051 -12.77743 -12.59973 -12.32287 -12.25519 -12.06179 -11.66956 -11.63448 -11.39984 -11.29883 -11.24129 -11.13619 -11.09978 -10.65966 -10.53632 -10.50696 -9.97026 -9.79508 -9.51496 -9.44579 -9.37348 -8.75854 -8.33338 -7.45449 -6.67054 -4.14529 1.09185 1.18981 1.53804 2.27886 3.01994 3.12473 3.15087 3.38620 3.63250 3.87005 3.99451 4.02637 4.49299 4.64598 4.68605 4.69420 4.76590 5.04057 5.12616 5.24095 5.26795 5.33121 5.42608 5.48250 5.51598 5.66757 5.74412 5.76712 5.80072 5.87211 5.92261 5.93769 6.03836 6.29320 6.34219 6.40643 6.53050 6.72620 7.27906 7.63848 7.81343 8.08797 8.73626 8.79546 8.97584 9.50487 10.34408 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.003947 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.146660 B = 7091.992836 C = 7987.562966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.040 4.040 3 C -0.132 4.132 4 C -0.149 4.149 5 S -0.074 6.074 6 C 0.122 3.878 7 C -0.137 4.137 8 C -0.032 4.032 9 C 0.476 3.524 10 O -0.566 6.566 11 N -0.422 5.422 12 C -0.308 4.308 13 H 0.116 0.884 14 C 0.033 3.967 15 N -0.875 5.875 16 Si 0.939 3.061 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.271 1.271 20 C 0.214 3.786 21 C 0.253 3.747 22 N -0.469 5.469 23 C -0.138 4.138 24 C 0.104 3.896 25 N -0.483 5.483 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.142 0.858 36 H 0.279 0.721 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 8.341 -13.704 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.191 4.191 4 C -0.207 4.207 5 S 0.167 5.833 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.045 4.045 9 C 0.265 3.735 10 O -0.450 6.450 11 N -0.140 5.140 12 C -0.435 4.435 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.515 5.515 16 Si 0.765 3.235 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.196 1.196 20 C 0.086 3.914 21 C -0.064 4.064 22 N -0.150 5.150 23 C -0.161 4.161 24 C -0.055 4.055 25 N -0.197 5.197 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.160 0.840 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.100 0.900 39 H 0.160 0.840 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.514 10.421 -12.019 16.105 hybrid contribution -0.213 -2.165 -0.036 2.176 sum -2.727 8.256 -12.055 14.863 Atomic orbital electron populations 1.22217 0.92209 1.04686 1.01576 1.22754 0.99369 0.97406 0.95475 1.21725 1.01684 0.92936 1.02708 1.22227 1.00927 1.02705 0.94853 1.85767 1.64279 1.01765 1.31458 1.22749 0.98232 0.98051 0.93576 1.22148 1.01504 0.92548 1.00167 1.20574 0.94828 0.94128 0.94999 1.17732 0.83414 0.86259 0.86135 1.90663 1.41441 1.51159 1.61734 1.43579 1.04649 1.25798 1.40000 1.19868 0.99215 1.02638 1.21808 0.86656 1.25386 0.95879 0.99204 0.96672 1.69666 1.10163 1.28883 1.42744 0.85763 0.77788 0.80647 0.79293 1.19424 1.20702 1.19573 1.19089 0.94762 0.87536 0.89964 1.28802 0.92203 0.91499 0.93935 1.80889 1.09225 1.15367 1.09476 1.22119 0.98911 1.01407 0.93709 1.22607 0.96512 0.87914 0.98437 1.67796 1.10072 1.21391 1.20458 0.92547 0.92365 0.89477 0.91759 0.90997 0.91829 0.89353 0.92409 0.92449 0.84037 0.90926 0.84766 0.90003 0.83984 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.27 37.16 0.31 -1.32 16 2 C -0.04 -0.45 0.86 -90.62 -0.08 -0.53 16 3 C -0.13 -1.22 8.48 37.16 0.32 -0.90 16 4 C -0.15 -1.59 8.27 37.16 0.31 -1.29 16 5 S -0.07 -1.08 20.85 -107.50 -2.24 -3.32 16 6 C 0.12 1.93 6.67 -16.97 -0.11 1.82 16 7 C -0.14 -2.46 7.36 -38.75 -0.29 -2.74 16 8 C -0.03 -0.60 5.00 -104.69 -0.52 -1.12 16 9 C 0.48 10.89 7.25 -12.25 -0.09 10.80 16 10 O -0.57 -14.75 16.64 5.31 0.09 -14.66 16 11 N -0.42 -9.84 2.59 -118.96 -0.31 -10.14 16 12 C -0.31 -7.74 9.45 -15.01 -0.14 -7.88 16 13 H 0.12 3.02 7.27 -52.49 -0.38 2.64 16 14 C 0.03 0.78 5.13 -17.44 -0.09 0.69 16 15 N -0.88 -21.13 8.45 55.50 0.47 -20.66 16 16 Si 0.94 19.05 29.59 -169.99 -5.03 14.02 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C 0.21 4.38 4.76 -6.83 -0.03 4.35 16 21 C 0.25 5.70 10.60 -20.79 -0.22 5.48 16 22 N -0.47 -11.25 18.53 42.12 0.78 -10.47 16 23 C -0.14 -2.10 9.83 -38.99 -0.38 -2.48 16 24 C 0.10 1.34 11.16 -17.63 -0.20 1.15 16 25 N -0.48 -6.81 4.61 -12.17 -0.06 -6.86 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 1.09 5.45 -51.93 -0.28 0.80 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.07 5.42 -51.93 -0.28 0.79 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.14 2.79 4.69 -52.48 -0.25 2.54 16 36 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 37 H 0.13 2.77 6.35 -51.93 -0.33 2.44 16 38 H 0.08 1.44 5.43 -51.93 -0.28 1.16 16 39 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 40 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -29.03 341.70 -7.11 -36.14 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.74 Total: 4.81 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -1.22 Total: 6.00 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.89 Total: -48.14 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.24 Total: -3.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.03 -7.11 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181238258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.311 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds