Wall clock time and date at job start Tue Mar 31 2020 12:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47333 * 2 1 4 4 C 1.52999 * 109.47066 * 240.00117 * 2 1 3 5 5 S 1.81404 * 109.47172 * 120.00110 * 2 1 3 6 6 C 1.76202 * 102.99839 * 60.00053 * 5 2 1 7 7 C 1.39137 * 119.64458 * 180.02562 * 6 5 2 8 8 C 1.39564 * 118.91430 * 179.72406 * 7 6 5 9 9 C 1.48010 * 120.88203 * 180.25534 * 8 7 6 10 10 O 1.21562 * 119.99996 * 132.74055 * 9 8 7 11 11 N 1.34781 * 120.00090 * 312.72992 * 9 8 7 12 12 C 1.36801 * 120.00078 * 185.01999 * 11 9 8 13 13 H 1.07997 * 119.99777 * 8.30266 * 12 11 9 14 14 C 1.39101 * 119.99929 * 188.29882 * 12 11 9 15 15 N 1.31332 * 119.99758 * 16.51954 * 14 12 11 16 16 Si 1.86799 * 120.00070 * 196.51562 * 14 12 11 17 17 H 1.48497 * 109.46926 * 60.00067 * 16 14 12 18 18 H 1.48493 * 109.47183 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47140 * 300.00382 * 16 14 12 20 20 C 1.46500 * 119.99670 * 5.02805 * 11 9 8 21 21 C 1.47194 * 109.47589 * 94.79299 * 20 11 9 22 22 N 6.45335 * 113.55571 * 123.18245 * 2 1 3 23 23 C 1.40131 * 118.23031 * 0.26966 * 8 7 6 24 24 C 1.37901 * 119.17942 * 0.02562 * 23 8 7 25 25 N 1.31935 * 121.01214 * 359.97438 * 24 23 8 26 26 H 1.09001 * 109.46646 * 300.00103 * 1 2 3 27 27 H 1.09002 * 109.47128 * 59.99477 * 1 2 3 28 28 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47657 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47440 * 300.00332 * 3 2 1 31 31 H 1.09001 * 109.47338 * 60.00321 * 3 2 1 32 32 H 1.08998 * 109.47313 * 299.99842 * 4 2 1 33 33 H 1.08996 * 109.47088 * 59.99862 * 4 2 1 34 34 H 1.09003 * 109.47188 * 180.02562 * 4 2 1 35 35 H 1.08004 * 120.54416 * 359.97438 * 7 6 5 36 36 H 0.96999 * 119.99740 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.46920 * 214.79438 * 20 11 9 38 38 H 1.09003 * 109.47300 * 334.78949 * 20 11 9 39 39 H 1.08004 * 120.40805 * 179.97438 * 23 8 7 40 40 H 1.08004 * 119.49404 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2492 5 16 2.1347 -0.8552 1.4811 6 6 1.4574 -2.4727 1.3091 7 6 1.7135 -3.4331 2.2827 8 6 1.1647 -4.7077 2.1341 9 6 1.4043 -5.7608 3.1462 10 8 0.4752 -6.4228 3.5662 11 7 2.6525 -5.9859 3.6020 12 6 2.8907 -7.0251 4.4591 13 1 2.1117 -7.7441 4.6656 14 6 4.1362 -7.1558 5.0646 15 7 4.9671 -6.1390 5.0835 16 14 4.6268 -8.7777 5.8510 17 1 4.6130 -9.8500 4.8238 18 1 5.9922 -8.6577 6.4222 19 1 3.6655 -9.1148 6.9314 20 6 3.7542 -5.1174 3.1797 21 6 3.9537 -4.0562 4.1799 22 7 4.1090 -3.2376 4.9510 23 6 0.3810 -4.9640 1.0010 24 6 0.1814 -3.9573 0.0799 25 7 0.7154 -2.7631 0.2516 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.3236 -3.1950 3.1415 36 1 5.8354 -6.2300 5.5060 37 1 4.6666 -5.7066 3.0882 38 1 3.5138 -4.6681 2.2161 39 1 -0.0604 -5.9381 0.8505 40 1 -0.4214 -4.1493 -0.7955 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181238258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:17 Heat of formation + Delta-G solvation = 35.254579 kcal Electronic energy + Delta-G solvation = -24485.876562 eV Core-core repulsion = 21006.553550 eV Total energy + Delta-G solvation = -3479.323012 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67896 -40.05959 -37.82682 -37.13957 -36.27235 -34.30640 -33.21883 -32.35165 -29.38034 -28.21204 -28.15075 -27.45016 -25.10816 -24.70819 -21.87952 -21.39253 -20.02046 -19.12659 -18.18032 -17.93586 -17.30696 -17.17306 -16.64956 -16.18396 -15.87788 -15.60513 -15.31043 -15.10813 -15.03712 -14.91336 -14.59269 -14.36047 -13.92506 -13.58809 -13.45617 -13.18663 -13.16712 -13.09860 -12.97301 -12.55550 -12.42982 -12.38288 -12.29928 -12.15332 -12.06143 -11.96965 -11.25777 -11.09305 -10.94217 -10.89393 -10.68093 -10.31762 -10.18639 -8.61617 -8.50033 -6.07360 -0.22741 -0.05849 0.42731 1.26765 1.37023 1.44390 1.54680 1.72237 1.90561 2.18305 2.28625 2.61472 2.83906 2.93956 3.41369 3.59353 3.67903 3.86036 3.86993 3.94013 3.97559 4.22782 4.23445 4.34692 4.56909 4.69178 4.72694 4.76421 4.83337 4.90602 4.95808 4.98863 5.02501 5.12541 5.19966 5.36024 5.36810 5.45068 5.64409 5.81175 6.23348 6.63016 6.91422 6.95099 7.14649 7.68598 8.48764 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.003947 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.146660 B = 7091.992836 C = 7987.562966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C -0.130 4.130 4 C -0.146 4.146 5 S -0.110 6.110 6 C 0.124 3.876 7 C -0.151 4.151 8 C -0.052 4.052 9 C 0.473 3.527 10 O -0.608 6.608 11 N -0.433 5.433 12 C -0.343 4.343 13 H 0.094 0.906 14 C 0.007 3.993 15 N -0.890 5.890 16 Si 0.999 3.001 17 H -0.258 1.258 18 H -0.275 1.275 19 H -0.279 1.279 20 C 0.221 3.779 21 C 0.265 3.735 22 N -0.500 5.500 23 C -0.135 4.135 24 C 0.125 3.875 25 N -0.469 5.469 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.120 0.880 36 H 0.281 0.719 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.154 0.846 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 9.243 -16.465 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.189 4.189 4 C -0.204 4.204 5 S 0.131 5.869 6 C -0.123 4.123 7 C -0.178 4.178 8 C -0.064 4.064 9 C 0.264 3.736 10 O -0.494 6.494 11 N -0.151 5.151 12 C -0.470 4.470 13 H 0.112 0.888 14 C -0.196 4.196 15 N -0.528 5.528 16 Si 0.822 3.178 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.205 1.205 20 C 0.095 3.905 21 C -0.052 4.052 22 N -0.182 5.182 23 C -0.158 4.158 24 C -0.034 4.034 25 N -0.183 5.183 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.172 0.828 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.911 11.353 -14.792 18.873 hybrid contribution -0.177 -2.333 0.722 2.448 sum -3.089 9.021 -14.070 16.997 Atomic orbital electron populations 1.22184 0.91750 1.04029 1.02485 1.22948 0.99616 0.97940 0.93561 1.21755 1.01734 0.91585 1.03816 1.22192 1.00805 1.02142 0.95280 1.85943 1.64606 1.01737 1.34581 1.22764 0.98126 0.98127 0.93292 1.21917 1.02418 0.93029 1.00470 1.20270 0.97330 0.93203 0.95618 1.18413 0.82712 0.86291 0.86228 1.90613 1.42596 1.52926 1.63277 1.43712 1.05518 1.25828 1.39996 1.19829 0.99595 1.03629 1.23933 0.88785 1.26063 0.95210 1.01804 0.96488 1.69744 1.10238 1.29925 1.42901 0.84888 0.77217 0.77372 0.78316 1.18266 1.19947 1.20481 1.19198 0.94014 0.86732 0.90554 1.29171 0.91224 0.91190 0.93612 1.80865 1.10366 1.16444 1.10479 1.22350 0.97813 1.02797 0.92873 1.23350 0.95011 0.86365 0.98682 1.67990 1.09231 1.21781 1.19310 0.93132 0.89947 0.90824 0.91808 0.88433 0.92071 0.90555 0.90072 0.92720 0.86255 0.90795 0.84837 0.87045 0.82782 0.77325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.27 71.98 0.60 -2.18 16 2 C -0.03 -0.62 0.86 -10.80 -0.01 -0.63 16 3 C -0.13 -2.04 8.48 71.98 0.61 -1.43 16 4 C -0.15 -2.66 8.27 71.98 0.60 -2.06 16 5 S -0.11 -3.11 20.85 -56.49 -1.18 -4.29 16 6 C 0.12 3.82 6.67 84.82 0.57 4.38 16 7 C -0.15 -5.46 7.36 22.81 0.17 -5.29 16 8 C -0.05 -1.93 5.00 -19.91 -0.10 -2.03 16 9 C 0.47 22.35 7.25 86.83 0.63 22.98 16 10 O -0.61 -32.90 16.64 -3.91 -0.07 -32.96 16 11 N -0.43 -20.85 2.59 -648.55 -1.68 -22.52 16 12 C -0.34 -17.84 9.45 84.13 0.80 -17.04 16 13 H 0.09 5.19 7.27 -2.91 -0.02 5.17 16 14 C 0.01 0.33 5.13 84.97 0.44 0.76 16 15 N -0.89 -43.46 8.45 21.69 0.18 -43.28 16 16 Si 1.00 39.35 29.59 68.60 2.03 41.38 16 17 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 18 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 19 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 20 C 0.22 9.27 4.76 84.57 0.40 9.67 16 21 C 0.26 12.25 10.60 89.45 0.95 13.19 16 22 N -0.50 -24.67 18.53 19.99 0.37 -24.30 16 23 C -0.13 -3.86 9.83 22.65 0.22 -3.64 16 24 C 0.13 2.79 11.16 84.60 0.94 3.73 16 25 N -0.47 -11.98 4.61 -192.41 -0.89 -12.87 16 26 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.62 5.45 -2.39 -0.01 1.60 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.59 5.42 -2.39 -0.01 1.58 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.12 4.86 4.69 -2.91 -0.01 4.84 16 36 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 37 H 0.13 5.61 6.35 -2.39 -0.02 5.59 16 38 H 0.11 3.96 5.43 -2.39 -0.01 3.95 16 39 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -65.34 341.70 6.66 -58.68 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 1.08 Total: 19.73 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 6.80 Total: 20.43 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -2.01 Total: -102.97 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.07 Total: -32.96 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.18 Total: -4.29 kcal Total: -65.34 6.66 -58.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181238258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.938 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds