Wall clock time and date at job start Tue Mar 31 2020 12:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21695 * 120.00167 * 359.97438 * 14 13 3 16 16 C 1.46705 * 120.00126 * 180.02562 * 14 13 3 17 17 C 1.36700 * 126.00818 * 179.71899 * 16 14 13 18 18 C 1.40754 * 107.19126 * 179.90422 * 17 16 14 19 19 C 1.48549 * 126.25669 * 180.13567 * 18 17 16 20 20 C 1.34713 * 122.93339 * 185.01859 * 19 18 17 21 21 S 1.76173 * 107.88567 * 179.88035 * 20 19 18 22 22 C 1.70915 * 90.42606 * 0.31993 * 21 20 19 23 23 C 1.50704 * 124.77725 * 179.77490 * 22 21 20 24 24 N 1.28874 * 110.45311 * 359.81058 * 22 21 20 25 25 C 1.36540 * 107.48417 * 0.35596 * 18 17 16 26 26 N 1.35541 * 108.50959 * 359.78161 * 25 18 17 27 27 H 0.97003 * 125.58673 * 180.02562 * 26 25 18 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 35 35 H 1.08001 * 126.40958 * 0.02562 * 17 16 14 36 36 H 1.07996 * 126.05218 * 359.97438 * 20 19 18 37 37 H 1.08998 * 109.47308 * 270.03854 * 23 22 21 38 38 H 1.08996 * 109.46743 * 30.04179 * 23 22 21 39 39 H 1.09001 * 109.47223 * 150.04115 * 23 22 21 40 40 H 1.08004 * 125.74138 * 179.77993 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3419 2.6326 0.4310 16 6 0.0472 3.3207 2.6204 17 6 -1.1477 3.9364 2.8689 18 6 -1.0975 4.4253 4.1878 19 6 -2.1765 5.1641 4.8926 20 6 -2.0216 5.6883 6.1238 21 16 -3.5341 6.4726 6.5721 22 6 -4.2280 6.0169 5.0781 23 6 -5.6376 6.3371 4.6517 24 7 -3.3765 5.3602 4.3677 25 6 0.1262 4.1008 4.6993 26 7 0.8248 3.4299 3.7511 27 1 1.7250 3.0832 3.8527 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8292 -0.0609 -2.9500 34 1 2.2719 2.1231 1.9979 35 1 -1.9763 4.0286 2.1823 36 1 -1.1281 5.6380 6.7283 37 1 -6.3043 5.5355 4.9694 38 1 -5.9518 7.2745 5.1106 39 1 -5.6760 6.4329 3.5666 40 1 0.4782 4.3387 5.6923 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183824791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:02 Heat of formation + Delta-G solvation = 42.157472 kcal Electronic energy + Delta-G solvation = -23369.935726 eV Core-core repulsion = 19890.912046 eV Total energy + Delta-G solvation = -3479.023680 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31605 -39.62879 -38.50103 -35.08903 -33.15906 -32.40832 -31.08840 -30.61469 -29.40153 -27.95178 -26.84383 -24.30302 -23.38519 -22.16655 -20.92256 -19.99279 -19.59979 -19.19778 -18.83946 -17.16771 -16.33096 -15.47768 -15.35471 -15.21646 -15.10274 -14.79476 -14.26796 -13.95064 -13.77327 -13.42683 -13.20193 -13.06589 -12.83715 -12.67552 -12.49461 -12.20197 -12.00572 -11.57761 -11.51485 -11.27376 -11.03456 -10.86174 -10.36398 -10.21354 -9.77103 -9.73935 -9.66478 -9.54489 -9.24744 -9.08580 -8.54772 -8.46917 -7.98897 -7.79488 -6.16374 -4.26461 0.52186 1.21438 1.58343 1.74348 2.19896 3.11371 3.20634 3.27950 3.29530 3.43063 3.89010 3.99688 4.02836 4.33728 4.76861 4.93147 5.06842 5.10983 5.14946 5.18750 5.23331 5.36360 5.59731 5.63230 5.81785 6.13439 6.31821 6.38981 6.45863 6.64969 6.71197 6.92514 7.03181 7.19339 7.31839 7.37275 7.38405 7.58045 7.68015 7.71154 7.85938 8.13764 8.57185 8.72220 9.02673 9.40684 10.88923 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.002456 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.618328 B =11396.887293 C =12015.566185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.571 3.429 15 O -0.531 6.531 16 C -0.032 4.032 17 C -0.084 4.084 18 C -0.126 4.126 19 C 0.166 3.834 20 C -0.272 4.272 21 S 0.100 5.900 22 C 0.055 3.945 23 C -0.078 4.078 24 N -0.463 5.463 25 C 0.040 3.960 26 N -0.534 5.534 27 H 0.421 0.579 28 H 0.039 0.961 29 H 0.023 0.977 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.381 0.619 35 H 0.151 0.849 36 H 0.175 0.825 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 10.400 19.182 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.356 3.644 15 O -0.409 6.409 16 C -0.145 4.145 17 C -0.110 4.110 18 C -0.135 4.135 19 C 0.035 3.965 20 C -0.411 4.411 21 S 0.354 5.646 22 C -0.224 4.224 23 C -0.139 4.139 24 N -0.177 5.177 25 C -0.099 4.099 26 N -0.130 5.130 27 H 0.259 0.741 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.213 0.787 35 H 0.169 0.831 36 H 0.192 0.808 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.856 10.551 18.579 24.434 hybrid contribution 2.513 -0.660 0.049 2.599 sum -9.343 9.891 18.627 23.067 Atomic orbital electron populations 1.21853 0.98211 0.98190 1.01371 1.21937 0.92731 0.99639 1.02288 1.18837 0.94281 0.89248 0.80683 0.93001 1.21190 0.90586 1.39307 1.06388 0.92221 1.24882 0.98627 0.94769 0.95339 1.69887 1.35165 1.37353 1.09309 0.86453 0.84814 0.78382 0.77474 1.20546 1.20998 1.19921 1.46437 1.14172 1.56206 1.18599 1.17043 0.83006 0.78972 0.85342 1.90827 1.51540 1.59984 1.38518 1.20711 0.94044 1.10585 0.89166 1.21011 0.96474 0.98228 0.95287 1.17229 0.92816 1.08217 0.95274 1.18057 0.90305 0.97643 0.90456 1.26741 1.02741 1.10269 1.01361 1.83805 1.06130 1.53731 1.20938 1.26985 1.01230 0.99872 0.94355 1.20466 0.87350 1.02336 1.03720 1.66138 1.01613 1.15579 1.34398 1.21790 0.92475 1.00676 0.94935 1.41995 1.15642 1.43982 1.11376 0.74101 0.94236 0.95752 0.93016 0.95106 0.88187 0.92467 0.78742 0.83106 0.80769 0.89534 0.90156 0.89071 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.77 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.71 -14.41 5.02 -56.24 -0.28 -14.69 16 14 C 0.57 11.70 6.35 -12.84 -0.08 11.62 16 15 O -0.53 -12.79 14.00 5.19 0.07 -12.72 16 16 C -0.03 -0.54 7.00 -82.39 -0.58 -1.12 16 17 C -0.08 -1.40 10.46 -39.19 -0.41 -1.81 16 18 C -0.13 -1.75 6.08 -105.31 -0.64 -2.39 16 19 C 0.17 2.19 6.71 -84.60 -0.57 1.62 16 20 C -0.27 -2.75 10.85 29.48 0.32 -2.43 16 21 S 0.10 0.86 23.16 -107.50 -2.49 -1.63 16 22 C 0.05 0.58 7.37 -13.52 -0.10 0.48 16 23 C -0.08 -0.54 10.46 36.01 0.38 -0.16 16 24 N -0.46 -6.39 10.44 -8.39 -0.09 -6.48 16 25 C 0.04 0.44 11.46 -16.53 -0.19 0.25 16 26 N -0.53 -6.48 5.98 -9.39 -0.06 -6.54 16 27 H 0.42 3.94 8.16 -40.82 -0.33 3.60 16 28 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.24 7.84 -51.93 -0.41 0.84 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.38 6.52 7.64 -40.82 -0.31 6.21 16 35 H 0.15 2.70 8.06 -52.49 -0.42 2.27 16 36 H 0.17 1.26 7.72 -52.49 -0.41 0.85 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.17 1.14 7.75 -52.48 -0.41 0.74 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -32.70 350.82 -9.14 -41.83 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.94 Total: 9.34 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.25 Total: -5.92 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.20 Total: -51.47 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.70 -9.14 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183824791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.990 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds