Wall clock time and date at job start Tue Mar 31 2020 12:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.34333 * 126.43533 * 269.70959 * 14 13 12 16 16 C 1.50700 * 125.81084 * 0.04433 * 15 14 13 17 17 C 1.53004 * 117.50094 * 188.62126 * 16 15 14 18 18 C 1.52998 * 117.50553 * 119.99549 * 16 15 14 19 19 N 1.33877 * 108.38619 * 179.89491 * 15 14 13 20 20 C 1.32355 * 109.13808 * 0.38094 * 19 15 14 21 21 S 1.76249 * 141.95724 * 179.79354 * 20 19 15 22 22 C 1.75788 * 90.70133 * 179.97438 * 21 20 19 23 23 C 1.30913 * 109.81668 * 359.97438 * 22 21 20 24 24 N 1.35148 * 108.82132 * 359.76570 * 20 19 15 25 25 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 28 28 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 29 29 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 30 30 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 31 31 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 32 32 H 1.09001 * 115.54364 * 334.32168 * 16 15 14 33 33 H 1.09003 * 117.49447 * 359.97438 * 17 16 15 34 34 H 1.08999 * 117.50070 * 145.01570 * 17 16 15 35 35 H 1.08997 * 117.50146 * 214.98231 * 18 16 15 36 36 H 1.09004 * 117.49251 * 359.97438 * 18 16 15 37 37 H 1.07994 * 125.09074 * 179.97438 * 22 21 20 38 38 H 1.08002 * 121.83540 * 180.02562 * 23 22 21 39 39 H 1.08999 * 113.76060 * 220.99233 * 25 12 11 40 40 H 1.09003 * 113.75638 * 89.62817 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.6561 -4.5788 4.2294 16 6 1.2104 -3.2086 4.5236 17 6 0.8773 -2.5884 5.8820 18 6 0.2169 -2.0485 4.6119 19 7 -0.2371 -5.2392 4.9766 20 6 -0.4882 -6.4121 4.4171 21 16 -1.4442 -7.8770 4.6334 22 6 -0.7792 -8.5552 3.1542 23 6 0.0621 -7.7084 2.6166 24 7 0.2443 -6.5218 3.2867 25 6 2.1616 -3.7403 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3760 -1.7802 -0.9686 28 1 1.3962 -2.5374 2.2102 29 1 -0.2739 -2.8571 1.5667 30 1 2.3964 -5.9035 1.6843 31 1 2.7125 -4.3337 2.4616 32 1 2.1931 -2.9986 4.1015 33 1 0.2568 -3.1713 6.5628 34 1 1.6410 -1.9703 6.3540 35 1 0.5460 -1.0751 4.2482 36 1 -0.8378 -2.2762 4.4568 37 1 -1.0274 -9.5252 2.7496 38 1 0.5843 -7.9299 1.6976 39 1 2.1778 -4.2727 -0.9521 40 1 3.1577 -3.5544 0.4006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191919673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:51 Heat of formation + Delta-G solvation = 117.974505 kcal Electronic energy + Delta-G solvation = -25042.361735 eV Core-core repulsion = 21566.625728 eV Total energy + Delta-G solvation = -3475.736007 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.59182 -39.03168 -37.45512 -35.58613 -34.45629 -32.09070 -31.50656 -29.88973 -27.75427 -25.69771 -25.11706 -23.97180 -23.40343 -22.29164 -21.95029 -19.74209 -19.48333 -18.58942 -18.00397 -17.20670 -16.10237 -16.03100 -15.36718 -15.08109 -14.93654 -14.88235 -14.20917 -14.01020 -13.87619 -13.82935 -13.18913 -12.60576 -12.06661 -12.04641 -11.95333 -11.59407 -11.44837 -11.35279 -11.13635 -11.09009 -10.85197 -10.82918 -10.45287 -10.35182 -10.31799 -10.26944 -10.06009 -9.75345 -9.36134 -8.66420 -8.47136 -8.22534 -7.85957 -7.50165 -6.26508 -4.36741 0.89436 0.94881 1.60029 2.28585 2.62641 2.88257 3.19713 3.26088 3.27820 4.23886 4.25470 4.46467 4.63663 4.81343 4.89093 4.98537 5.06198 5.13720 5.26839 5.32326 5.37583 5.44312 5.69875 5.84118 5.92038 5.95240 5.99382 6.20279 6.28418 6.29644 6.42456 6.46308 6.51928 6.63690 6.66547 6.93926 7.07859 7.12928 7.33848 7.75316 7.86312 7.89345 7.99167 8.64308 9.33265 9.64095 10.79218 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.004221 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.111513 B = 6632.189079 C = 7543.496416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.245 3.755 10 O -0.574 6.574 11 C -0.004 4.004 12 N -0.479 5.479 13 C 0.093 3.907 14 C 0.013 3.987 15 C 0.085 3.915 16 C -0.079 4.079 17 C -0.167 4.167 18 C -0.151 4.151 19 N -0.450 5.450 20 C 0.132 3.868 21 S 0.168 5.832 22 C -0.235 4.235 23 C 0.070 3.930 24 N -0.399 5.399 25 C 0.007 3.993 26 H 0.271 0.729 27 H 0.389 0.611 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.194 0.806 38 H 0.180 0.820 39 H 0.075 0.925 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -13.091 8.286 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.728 3.272 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.203 3.797 10 O -0.386 6.386 11 C -0.132 4.132 12 N -0.202 5.202 13 C -0.036 4.036 14 C -0.100 4.100 15 C -0.045 4.045 16 C -0.099 4.099 17 C -0.205 4.205 18 C -0.189 4.189 19 N -0.173 5.173 20 C -0.234 4.234 21 S 0.415 5.585 22 C -0.372 4.372 23 C -0.060 4.060 24 N -0.078 5.078 25 C -0.121 4.121 26 H 0.082 0.918 27 H 0.244 0.756 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.211 0.789 38 H 0.197 0.803 39 H 0.094 0.906 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.937 -14.202 9.540 17.134 hybrid contribution 2.054 1.887 -1.317 3.084 sum 1.117 -12.315 8.224 14.851 Atomic orbital electron populations 1.69338 1.06080 1.27895 1.50257 1.25023 0.94915 0.99494 0.93382 0.86516 0.79612 0.82262 0.78833 1.21005 1.20016 1.20018 1.21583 0.93554 0.90686 1.51889 0.91769 1.19744 0.85094 0.90584 0.84265 1.86028 1.45226 1.50285 1.57031 1.24758 1.00715 0.86370 1.01406 1.68713 1.25952 1.17424 1.08096 1.21023 0.92514 0.99899 0.90199 1.20922 1.02797 0.85284 1.01020 1.19483 0.97239 0.95646 0.92145 1.20191 0.99728 0.87634 1.02311 1.22953 1.03596 1.03137 0.90767 1.22958 0.98384 0.97149 1.00391 1.70343 1.16695 1.01165 1.29136 1.26002 1.03764 1.02030 0.91603 1.84527 1.46348 1.03258 1.24338 1.24954 1.04948 1.05555 1.01713 1.20398 1.01396 0.84278 0.99890 1.43613 1.32132 1.13109 1.18971 1.24181 0.95111 0.96828 0.96010 0.91813 0.75577 0.91275 0.91461 0.91041 0.91845 0.86361 0.88164 0.88842 0.87871 0.88788 0.78938 0.80316 0.90636 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.62 11.09 55.43 0.61 -23.00 16 2 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 3 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.96 8.62 -34.44 -0.30 -14.25 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.24 6.05 1.44 -90.84 -0.13 5.92 16 10 O -0.57 -15.47 13.48 -35.23 -0.47 -15.94 16 11 C 0.00 -0.08 6.24 -2.77 -0.02 -0.10 16 12 N -0.48 -9.79 6.25 -239.69 -1.50 -11.29 16 13 C 0.09 1.58 5.15 -4.97 -0.03 1.56 16 14 C 0.01 0.24 6.39 -80.75 -0.52 -0.28 16 15 C 0.09 1.54 6.35 -83.08 -0.53 1.01 16 16 C -0.08 -1.30 4.03 -91.77 -0.37 -1.68 16 17 C -0.17 -2.42 10.14 -26.73 -0.27 -2.69 16 18 C -0.15 -2.48 9.84 -26.73 -0.26 -2.75 16 19 N -0.45 -8.26 10.91 -9.77 -0.11 -8.37 16 20 C 0.13 2.17 8.93 -88.71 -0.79 1.38 16 21 S 0.17 1.95 23.37 -107.50 -2.51 -0.56 16 22 C -0.23 -2.25 11.11 29.04 0.32 -1.92 16 23 C 0.07 0.84 11.26 -16.71 -0.19 0.65 16 24 N -0.40 -6.38 3.19 -59.60 -0.19 -6.57 16 25 C 0.01 0.15 7.36 -2.77 -0.02 0.13 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.39 10.70 6.46 45.56 0.29 10.99 16 28 H 0.07 1.51 5.17 -51.93 -0.27 1.24 16 29 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.04 6.85 -51.93 -0.36 0.69 16 32 H 0.12 1.86 6.91 -51.93 -0.36 1.50 16 33 H 0.10 1.50 7.89 -51.93 -0.41 1.09 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.18 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -30.00 343.52 -11.63 -41.63 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -4.43 Total: 15.18 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.19 Total: -11.21 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -1.18 Total: -49.23 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.47 Total: -15.94 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.51 Total: -0.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.00 -11.63 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191919673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.602 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds