Wall clock time and date at job start Tue Mar 31 2020 12:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34436 * 125.55930 * 2 1 4 4 C 1.46723 * 106.51433 * 179.97438 * 3 2 1 5 5 C 1.47248 * 126.88260 * 180.02562 * 4 3 2 6 6 O 1.21632 * 119.99910 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00111 * 359.97438 * 5 4 3 8 8 C 1.46504 * 119.99975 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46934 * 34.99398 * 8 7 5 10 10 C 1.52996 * 109.47080 * 274.99808 * 8 7 5 11 11 C 1.50697 * 109.46918 * 154.99509 * 8 7 5 12 12 H 1.07994 * 120.00527 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99710 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00208 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 120.00001 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47055 * 90.00113 * 15 13 11 17 17 H 1.48502 * 109.47125 * 209.99952 * 15 13 11 18 18 H 1.48501 * 109.46991 * 330.00048 * 15 13 11 19 19 C 1.36759 * 106.23038 * 359.97438 * 4 3 2 20 20 C 1.50696 * 125.86139 * 180.02562 * 19 4 3 21 21 N 1.35535 * 108.28303 * 0.02562 * 19 4 3 22 22 C 1.39353 * 124.95317 * 180.02562 * 21 19 4 23 23 N 1.29571 * 124.93861 * 227.25693 * 22 21 19 24 24 C 1.31890 * 116.95838 * 179.81445 * 23 22 21 25 25 C 1.33526 * 114.55756 * 0.47054 * 24 23 22 26 26 S 1.70974 * 124.94380 * 47.55812 * 22 21 19 27 27 H 1.09005 * 109.46664 * 95.18865 * 1 2 3 28 28 H 1.08994 * 109.47262 * 215.18498 * 1 2 3 29 29 H 1.09002 * 109.47183 * 335.19046 * 1 2 3 30 30 H 1.07998 * 126.73956 * 0.23578 * 3 2 1 31 31 H 0.97003 * 120.00058 * 359.97438 * 7 5 4 32 32 H 1.08992 * 109.47529 * 59.99591 * 10 8 7 33 33 H 1.09001 * 109.47227 * 180.02562 * 10 8 7 34 34 H 1.09002 * 109.46902 * 299.99610 * 10 8 7 35 35 H 0.97001 * 120.00564 * 179.97438 * 14 13 11 36 36 H 1.09007 * 109.46902 * 89.98101 * 20 19 4 37 37 H 1.08998 * 109.47504 * 209.97742 * 20 19 4 38 38 H 1.08998 * 109.47426 * 329.98221 * 20 19 4 39 39 H 1.07999 * 122.72000 * 180.26460 * 24 23 22 40 40 H 1.08003 * 125.98567 * 179.75046 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2888 1.0937 0.0000 4 6 3.6758 0.6149 0.0006 5 6 4.8955 1.4398 0.0014 6 8 5.9893 0.9080 0.0023 7 7 4.7998 2.7841 0.0010 8 6 6.0133 3.6049 0.0024 9 1 6.7866 3.1109 -0.5860 10 6 6.5044 3.7867 1.4399 11 6 5.7087 4.9528 -0.5988 12 1 4.7110 5.1760 -0.9467 13 6 6.7037 5.9015 -0.7038 14 7 7.9186 5.6299 -0.2798 15 14 6.3261 7.5726 -1.4483 16 1 5.8928 8.5053 -0.3770 17 1 7.5445 8.1076 -2.1075 18 1 5.2408 7.4333 -2.4523 19 6 3.6086 -0.7511 0.0015 20 6 4.7851 -1.6928 0.0030 21 7 2.3023 -1.1125 0.0009 22 6 1.8375 -2.4263 0.0021 23 7 0.9110 -2.8862 -0.7782 24 6 0.5950 -4.1598 -0.6451 25 6 1.2815 -4.8060 0.3005 26 16 2.4017 -3.6638 1.0382 27 1 -0.3633 -0.0929 -1.0235 28 1 -0.3633 -0.8398 0.5921 29 1 -0.3634 0.9328 0.4312 30 1 1.9605 2.1225 0.0036 31 1 3.9274 3.2083 -0.0001 32 1 6.7246 2.8119 1.8747 33 1 7.4071 4.3978 1.4409 34 1 5.7311 4.2807 2.0282 35 1 8.6187 6.2972 -0.3539 36 1 5.0682 -1.9188 1.0311 37 1 4.5128 -2.6152 -0.5100 38 1 5.6251 -1.2256 -0.5109 39 1 -0.1601 -4.6402 -1.2496 40 1 1.1696 -5.8467 0.5666 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194645371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:34 Heat of formation + Delta-G solvation = 38.490531 kcal Electronic energy + Delta-G solvation = -23862.907266 eV Core-core repulsion = 20383.724575 eV Total energy + Delta-G solvation = -3479.182691 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.86213 -40.65518 -39.95815 -36.66684 -34.46871 -33.86606 -33.71538 -31.10717 -30.31423 -29.87911 -27.32290 -26.49118 -25.85934 -23.91883 -22.61710 -22.10769 -20.85579 -20.33283 -18.96061 -18.48350 -17.79622 -17.14037 -16.91072 -16.65667 -16.11658 -15.91199 -15.69202 -15.23460 -14.82364 -14.67660 -14.43361 -14.31764 -14.19599 -14.09729 -13.68194 -13.62414 -13.21003 -13.09588 -12.96592 -12.82629 -12.71536 -12.62632 -12.47854 -12.25434 -12.11777 -11.07896 -11.05705 -10.78874 -10.72092 -10.55467 -10.42373 -9.76501 -9.43831 -9.13467 -8.15076 -6.32269 -0.69761 -0.21614 0.47961 0.72050 1.22626 1.43232 1.46292 1.47323 1.58010 1.76185 2.39418 2.60390 2.79321 3.15249 3.25005 3.69434 3.77689 4.00353 4.15119 4.30762 4.35393 4.40954 4.52285 4.55497 4.70238 4.74165 4.78635 4.89440 4.96309 4.99370 5.02091 5.12579 5.17930 5.47338 5.62000 5.65119 5.72689 5.77925 5.95345 6.08059 6.13171 6.52104 6.75146 7.04968 7.34838 7.60895 8.91503 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.002856 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.372236 B = 9803.276424 C =10466.466531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.034 3.966 3 C -0.164 4.164 4 C -0.225 4.225 5 C 0.573 3.427 6 O -0.597 6.597 7 N -0.698 5.698 8 C 0.273 3.727 9 H 0.000 1.000 10 C -0.132 4.132 11 C -0.547 4.547 12 H 0.072 0.928 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.973 3.027 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.093 3.907 20 C -0.091 4.091 21 N -0.375 5.375 22 C 0.198 3.802 23 N -0.490 5.490 24 C 0.036 3.964 25 C -0.229 4.229 26 S 0.192 5.808 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.172 0.828 31 H 0.402 0.598 32 H 0.012 0.988 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.215 0.785 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 -21.327 3.085 28.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.188 4.188 4 C -0.236 4.236 5 C 0.362 3.638 6 O -0.481 6.481 7 N -0.346 5.346 8 C 0.170 3.830 9 H 0.018 0.982 10 C -0.191 4.191 11 C -0.585 4.585 12 H 0.090 0.910 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.798 3.202 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.020 4.020 20 C -0.148 4.148 21 N -0.054 5.054 22 C -0.164 4.164 23 N -0.209 5.209 24 C -0.114 4.114 25 C -0.369 4.369 26 S 0.444 5.556 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.189 0.811 31 H 0.237 0.763 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.231 0.769 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -17.518 -21.552 3.514 27.995 hybrid contribution -0.553 0.876 -0.980 1.426 sum -18.072 -20.676 2.534 27.577 Atomic orbital electron populations 1.20342 0.84964 1.04031 1.03352 1.20872 0.95175 0.83641 1.07555 1.22121 0.89497 0.99091 1.08109 1.20288 0.93655 0.92404 1.17229 1.17730 0.87729 0.82533 0.75780 1.90654 1.29953 1.73415 1.54105 1.46050 1.10942 1.05118 1.72483 1.18348 0.82492 0.88875 0.93314 0.98247 1.21892 1.01824 0.98016 0.97398 1.21546 0.97355 0.98180 1.41441 0.91021 1.25801 0.94532 1.02723 0.95487 1.70053 1.02435 1.36131 1.46967 0.85331 0.77679 0.78606 0.78625 1.19501 1.21135 1.18933 1.20673 0.83971 0.94279 1.03028 1.20604 0.93358 0.96541 1.04285 1.40391 1.05163 1.01926 1.57963 1.23454 1.01642 0.91039 1.00288 1.66342 1.15244 1.16301 1.23024 1.22115 1.02765 0.86467 1.00095 1.27742 1.00241 1.06773 1.02123 1.84354 1.37563 1.00353 1.33333 0.90318 0.91907 0.87827 0.81095 0.76279 0.96871 0.91313 0.94215 0.92526 0.88990 0.90214 0.89640 0.76900 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 9.69 71.24 0.69 -0.64 16 2 C 0.03 0.91 6.82 40.92 0.28 1.19 16 3 C -0.16 -4.90 10.44 23.62 0.25 -4.66 16 4 C -0.23 -8.31 6.29 -19.04 -0.12 -8.43 16 5 C 0.57 26.05 7.77 86.61 0.67 26.72 16 6 O -0.60 -31.01 14.47 -4.13 -0.06 -31.07 16 7 N -0.70 -32.04 5.07 -449.54 -2.28 -34.31 16 8 C 0.27 14.90 2.56 44.24 0.11 15.02 16 9 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 10 C -0.13 -7.01 9.26 71.98 0.67 -6.35 16 11 C -0.55 -30.09 8.73 25.60 0.22 -29.87 16 12 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 13 C 0.01 0.80 5.30 84.66 0.45 1.25 16 14 N -0.92 -53.77 11.32 21.45 0.24 -53.52 16 15 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.09 3.04 6.85 41.64 0.29 3.33 16 20 C -0.09 -2.61 8.77 71.23 0.62 -1.99 16 21 N -0.38 -10.53 2.91 -330.88 -0.96 -11.50 16 22 C 0.20 4.55 6.54 179.10 1.17 5.72 16 23 N -0.49 -10.38 10.22 -201.51 -2.06 -12.44 16 24 C 0.04 0.46 11.34 83.62 0.95 1.41 16 25 C -0.23 -2.08 11.35 66.75 0.76 -1.32 16 26 S 0.19 2.99 21.78 -56.49 -1.23 1.76 16 27 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.06 1.16 7.91 -2.39 -0.02 1.14 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.17 4.28 7.68 -2.91 -0.02 4.26 16 31 H 0.40 15.96 7.65 -92.71 -0.71 15.25 16 32 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.08 1.88 7.28 -2.39 -0.02 1.86 16 38 H 0.08 2.97 6.47 -2.39 -0.02 2.95 16 39 H 0.21 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.23 0.17 8.06 -2.91 -0.02 0.14 16 Total: -1.00 -74.71 351.84 3.06 -71.65 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.37 Total: 23.04 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 7.01 Total: 1.38 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -5.06 Total: -111.77 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.06 Total: -31.07 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.23 Total: 1.76 kcal Total: -74.71 3.06 -71.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194645371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.139 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds