Wall clock time and date at job start Tue Mar 31 2020 12:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.36626 * 122.95150 * 40.49463 * 3 2 1 5 5 S 1.70599 * 110.54327 * 179.69295 * 4 3 2 6 6 C 1.75695 * 91.84853 * 0.34903 * 5 4 3 7 7 C 1.46712 * 125.06558 * 179.91014 * 6 5 4 8 8 O 1.21681 * 119.99689 * 179.70154 * 7 6 5 9 9 N 1.34777 * 119.99998 * 359.70099 * 7 6 5 10 10 C 1.46497 * 120.00005 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47074 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.49283 * 54.93498 * 11 10 9 13 13 C 1.53037 * 109.49594 * 175.00070 * 11 10 9 14 14 C 1.53043 * 109.52755 * 181.36018 * 13 11 10 15 15 C 1.53195 * 109.30921 * 298.61462 * 14 13 11 16 16 N 1.46927 * 108.76685 * 54.65269 * 15 14 13 17 17 C 1.36933 * 120.62748 * 126.40474 * 16 15 14 18 18 H 1.08005 * 120.00541 * 332.52035 * 17 16 15 19 19 C 1.38817 * 119.99954 * 152.52254 * 17 16 15 20 20 N 1.31618 * 120.00033 * 159.22204 * 19 17 16 21 21 Si 1.86801 * 120.00030 * 339.22501 * 19 17 16 22 22 H 1.48499 * 109.47090 * 93.05532 * 21 19 17 23 23 H 1.48496 * 109.47264 * 213.05871 * 21 19 17 24 24 H 1.48503 * 109.46848 * 333.05420 * 21 19 17 25 25 C 1.46925 * 118.73808 * 306.38519 * 16 15 14 26 26 C 1.34954 * 109.86799 * 359.65004 * 6 5 4 27 27 H 1.08004 * 124.72845 * 359.97438 * 4 3 2 28 28 H 0.97000 * 119.99761 * 359.97438 * 9 7 6 29 29 H 1.09007 * 109.46953 * 59.99943 * 10 9 7 30 30 H 1.09001 * 109.46871 * 300.00181 * 10 9 7 31 31 H 1.09002 * 109.46046 * 301.36972 * 13 11 10 32 32 H 1.09002 * 109.46132 * 61.34475 * 13 11 10 33 33 H 1.08992 * 109.49587 * 58.57507 * 14 13 11 34 34 H 1.09005 * 109.49865 * 178.67872 * 14 13 11 35 35 H 1.09000 * 109.59638 * 294.86761 * 15 14 13 36 36 H 1.08999 * 109.70424 * 174.50707 * 15 14 13 37 37 H 0.97005 * 120.00013 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.58896 * 293.81912 * 25 16 15 39 39 H 1.09004 * 109.70299 * 173.46048 * 25 16 15 40 40 H 1.08000 * 123.17739 * 180.26032 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3115 -0.8709 -0.7445 5 16 4.9775 -0.5858 -0.5130 6 6 4.6550 0.7229 0.6140 7 6 5.6806 1.5214 1.2943 8 8 5.3525 2.4125 2.0551 9 7 6.9863 1.2679 1.0766 10 6 8.0105 2.0656 1.7555 11 6 9.3985 1.5761 1.3372 12 1 9.4795 1.5975 0.2504 13 6 10.4665 2.4868 1.9472 14 6 11.8536 2.0180 1.5017 15 6 12.0914 0.5905 2.0042 16 7 10.9888 -0.2633 1.5416 17 6 11.2430 -1.4164 0.8482 18 1 12.1435 -1.5046 0.2585 19 6 10.3432 -2.4720 0.9032 20 7 10.3485 -3.3910 -0.0390 21 14 9.1248 -2.5882 2.3144 22 1 7.8507 -1.9331 1.9235 23 1 8.8700 -4.0162 2.6321 24 1 9.6852 -1.9077 3.5094 25 6 9.6084 0.1435 1.8376 26 6 3.3231 0.8879 0.7563 27 1 2.9016 -1.6311 -1.3930 28 1 7.2478 0.5573 0.4704 29 1 7.8979 1.9591 2.8345 30 1 7.8962 3.1140 1.4799 31 1 10.3045 3.5113 1.6122 32 1 10.4010 2.4456 3.0345 33 1 11.9112 2.0352 0.4135 34 1 12.6125 2.6810 1.9174 35 1 12.1239 0.5871 3.0937 36 1 13.0352 0.2144 1.6094 37 1 9.7195 -4.1285 -0.0008 38 1 9.4383 0.1036 2.9135 39 1 8.9117 -0.5257 1.3324 40 1 2.8858 1.6388 1.3976 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267851442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:12 Heat of formation + Delta-G solvation = 43.269478 kcal Electronic energy + Delta-G solvation = -23928.558911 eV Core-core repulsion = 20449.583451 eV Total energy + Delta-G solvation = -3478.975460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.01290 -38.69269 -38.01039 -36.14779 -34.95348 -33.19635 -31.49710 -30.75204 -30.17308 -26.47527 -25.56166 -25.35611 -23.08312 -22.21641 -21.02839 -20.18039 -19.50825 -18.86890 -17.45162 -16.95216 -16.33145 -16.01272 -15.68363 -15.25522 -14.52629 -14.31754 -14.22504 -13.97471 -13.83059 -13.74367 -13.40324 -13.36253 -13.03447 -12.88372 -12.70926 -12.58577 -12.41646 -12.15216 -11.70458 -11.55141 -11.35778 -10.87234 -10.67714 -10.60470 -10.24058 -10.20804 -9.94179 -9.78629 -9.54657 -9.40985 -9.09976 -8.94931 -8.70246 -7.06231 -6.04429 -3.40005 0.02566 0.98730 1.32490 1.35483 2.39867 2.91815 3.04298 3.18186 3.22851 3.40932 3.43836 3.75692 4.42005 4.43465 4.66390 4.76445 4.85818 5.07910 5.15984 5.21698 5.33668 5.35631 5.53750 5.57499 5.69571 5.73208 5.76132 5.94908 6.02560 6.04686 6.21800 6.26542 6.34969 6.48267 6.49231 6.62074 6.63109 6.89659 7.19128 7.36749 7.86957 8.03204 8.24117 8.85126 9.62488 10.01047 11.11352 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.004027 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.532617 B = 6951.802512 C = 8264.554786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.278 3.722 3 C -0.061 4.061 4 C -0.190 4.190 5 S 0.294 5.706 6 C -0.267 4.267 7 C 0.589 3.411 8 O -0.530 6.530 9 N -0.719 5.719 10 C 0.126 3.874 11 C -0.121 4.121 12 H 0.081 0.919 13 C -0.101 4.101 14 C -0.134 4.134 15 C 0.146 3.854 16 N -0.605 5.605 17 C -0.259 4.259 18 H 0.087 0.913 19 C 0.025 3.975 20 N -0.906 5.906 21 Si 0.875 3.125 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.133 3.867 26 C -0.026 4.026 27 H 0.184 0.816 28 H 0.402 0.598 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 8.565 -1.117 11.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.040 4.040 3 C -0.079 4.079 4 C -0.333 4.333 5 S 0.563 5.437 6 C -0.387 4.387 7 C 0.375 3.625 8 O -0.408 6.408 9 N -0.370 5.370 10 C 0.003 3.997 11 C -0.142 4.142 12 H 0.100 0.900 13 C -0.139 4.139 14 C -0.174 4.174 15 C 0.020 3.980 16 N -0.329 5.329 17 C -0.387 4.387 18 H 0.104 0.896 19 C -0.174 4.174 20 N -0.549 5.549 21 Si 0.705 3.295 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.197 1.197 25 C 0.007 3.993 26 C -0.059 4.059 27 H 0.201 0.799 28 H 0.238 0.762 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.318 8.364 -1.206 11.858 hybrid contribution -1.596 -0.084 0.992 1.881 sum -9.915 8.280 -0.214 12.919 Atomic orbital electron populations 1.81268 1.11704 1.08007 1.08392 1.24954 0.91708 0.93696 0.93620 1.15044 0.85954 1.01747 1.05114 1.26106 0.99833 1.03518 1.03799 1.83782 1.00303 1.24906 1.34759 1.24276 0.97967 1.06653 1.09850 1.16852 0.81681 0.82821 0.81192 1.90825 1.81502 1.31815 1.36703 1.45990 1.05346 1.37821 1.47891 1.21545 0.86259 0.94652 0.97286 1.22007 0.91996 0.98348 1.01807 0.90022 1.21343 0.94826 0.97532 1.00179 1.21986 0.95696 0.98315 1.01354 1.20969 0.91801 0.89223 0.96023 1.44340 0.99315 1.24129 1.65082 1.18955 1.08894 0.89647 1.21238 0.89580 1.25269 0.98500 0.95932 0.97723 1.69837 1.38306 1.14788 1.31946 0.87090 0.80999 0.75992 0.85379 1.21499 1.23016 1.19651 1.21373 0.87980 0.92486 0.97455 1.20223 0.90867 0.97737 0.97077 0.79883 0.76229 0.91186 0.91108 0.92649 0.92247 0.91890 0.92524 0.95992 0.91876 0.92732 0.95566 0.91292 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.43 18.54 41.84 0.78 -4.66 16 2 C 0.28 3.03 15.55 -22.48 -0.35 2.68 16 3 C -0.06 -0.58 5.67 -108.31 -0.61 -1.19 16 4 C -0.19 -1.53 10.82 30.15 0.33 -1.20 16 5 S 0.29 2.83 22.09 -107.50 -2.37 0.46 16 6 C -0.27 -3.12 6.38 -37.33 -0.24 -3.36 16 7 C 0.59 8.41 7.78 -12.84 -0.10 8.31 16 8 O -0.53 -8.92 16.79 5.21 0.09 -8.83 16 9 N -0.72 -10.09 5.33 -61.61 -0.33 -10.42 16 10 C 0.13 1.75 5.07 -4.04 -0.02 1.73 16 11 C -0.12 -1.84 2.37 -90.50 -0.21 -2.06 16 12 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 13 C -0.10 -1.37 5.17 -26.69 -0.14 -1.51 16 14 C -0.13 -1.96 6.08 -26.61 -0.16 -2.12 16 15 C 0.15 2.65 6.52 -3.71 -0.02 2.62 16 16 N -0.61 -13.26 2.77 -172.32 -0.48 -13.73 16 17 C -0.26 -6.75 10.03 -15.06 -0.15 -6.90 16 18 H 0.09 2.41 8.06 -52.48 -0.42 1.99 16 19 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 20 N -0.91 -25.86 13.97 55.49 0.78 -25.08 16 21 Si 0.88 20.82 24.35 -169.99 -4.14 16.68 16 22 H -0.29 -6.25 6.62 56.52 0.37 -5.88 16 23 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.27 -6.53 6.64 56.52 0.38 -6.16 16 25 C 0.13 2.59 3.29 -3.71 -0.01 2.58 16 26 C -0.03 -0.28 9.72 -40.50 -0.39 -0.67 16 27 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.40 5.50 6.78 -40.82 -0.28 5.22 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 39 H 0.07 1.44 3.73 -51.93 -0.19 1.25 16 40 H 0.16 1.63 8.03 -52.49 -0.42 1.21 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -31.01 347.00 -7.72 -38.73 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.09 Total: 2.14 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.18 Total: -0.51 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.75 Total: -53.89 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.14 Total: 16.68 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.37 Total: 0.46 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.01 -7.72 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267851442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.997 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds