Wall clock time and date at job start Tue Mar 31 2020 12:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37470 * 122.44849 * 2 1 4 4 C 1.36669 * 113.29179 * 179.78432 * 3 2 1 5 5 C 1.46553 * 125.45820 * 180.16125 * 4 3 2 6 6 O 1.21718 * 120.00139 * 0.31631 * 5 4 3 7 7 N 1.34780 * 119.99820 * 180.31429 * 5 4 3 8 8 C 1.40089 * 119.99816 * 180.02562 * 7 5 4 9 9 C 1.40425 * 125.97563 * 359.71530 * 8 7 5 10 10 C 1.35230 * 107.86665 * 179.83085 * 9 8 7 11 11 C 1.50701 * 126.07226 * 180.15599 * 10 9 8 12 12 N 1.34973 * 107.86185 * 0.42987 * 10 9 8 13 13 C 1.46502 * 125.97298 * 179.70949 * 12 10 9 14 14 C 1.50702 * 109.47135 * 269.99774 * 13 12 10 15 15 H 1.08004 * 119.99989 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00386 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00160 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99767 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47086 * 89.99844 * 18 16 14 20 20 H 1.48501 * 109.47232 * 209.99861 * 18 16 14 21 21 H 1.48502 * 109.47235 * 330.00300 * 18 16 14 22 22 N 1.31223 * 125.97433 * 180.02562 * 8 7 5 23 23 S 1.75828 * 109.08151 * 0.45247 * 4 3 2 24 24 C 1.33815 * 122.44505 * 180.28707 * 2 1 3 25 25 C 1.50697 * 124.52496 * 359.97438 * 24 2 1 26 26 H 1.09002 * 109.47152 * 269.71234 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.71335 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.71316 * 1 2 3 29 29 H 1.08005 * 123.35573 * 359.97438 * 3 2 1 30 30 H 0.96991 * 120.00259 * 359.97438 * 7 5 4 31 31 H 1.08002 * 126.06512 * 359.96259 * 9 8 7 32 32 H 1.08999 * 109.47313 * 270.32142 * 11 10 9 33 33 H 1.09006 * 109.46419 * 30.32138 * 11 10 9 34 34 H 1.09004 * 109.47170 * 150.31480 * 11 10 9 35 35 H 1.09005 * 109.47305 * 29.99487 * 13 12 10 36 36 H 1.09000 * 109.47481 * 149.99646 * 13 12 10 37 37 H 0.97000 * 119.99464 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.46750 * 89.99944 * 25 24 2 39 39 H 1.09000 * 109.47362 * 209.99818 * 25 24 2 40 40 H 1.08994 * 109.46835 * 330.00293 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5939 0.9426 0.0047 5 6 4.6232 1.9858 0.0092 6 8 4.3003 3.1594 0.0148 7 7 5.9274 1.6457 0.0073 8 6 6.9112 2.6429 0.0122 9 6 6.6817 4.0283 0.0136 10 6 7.8836 4.6480 0.0224 11 6 8.1140 6.1373 0.0302 12 7 8.8403 3.6960 0.0168 13 6 10.2866 3.9294 0.0169 14 6 10.7815 4.0166 -1.4038 15 1 10.0881 3.9085 -2.2248 16 6 12.1195 4.2344 -1.6557 17 7 12.5514 4.3100 -2.8956 18 14 13.3187 4.4220 -0.2358 19 1 13.8602 3.0896 0.1341 20 1 14.4338 5.3135 -0.6442 21 1 12.6153 5.0119 0.9315 22 7 8.2086 2.4458 0.0105 23 16 3.8970 -0.7893 -0.0039 24 6 2.2249 -1.1293 -0.0057 25 6 1.6354 -2.5161 -0.0121 26 1 -0.3633 -0.0052 1.0277 27 1 -0.3633 -0.8874 -0.5183 28 1 -0.3633 0.8926 -0.5094 29 1 1.8019 2.1452 -0.0004 30 1 6.1847 0.7106 0.0033 31 1 5.7164 4.5128 0.0105 32 1 8.1690 6.5018 -0.9956 33 1 7.2902 6.6296 0.5471 34 1 9.0493 6.3576 0.5448 35 1 10.5039 4.8633 0.5353 36 1 10.7875 3.1061 0.5262 37 1 13.4927 4.4628 -3.0727 38 1 1.4929 -2.8455 -1.0413 39 1 2.3125 -3.2011 0.4982 40 1 0.6744 -2.5047 0.5021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271118986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:58 Heat of formation + Delta-G solvation = 48.875971 kcal Electronic energy + Delta-G solvation = -23101.672266 eV Core-core repulsion = 19622.939922 eV Total energy + Delta-G solvation = -3478.732344 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42220 -40.84811 -39.33374 -36.45528 -35.29479 -33.62653 -32.97846 -32.84419 -30.54326 -29.21875 -27.95578 -27.17811 -25.10422 -24.23001 -22.60499 -21.46444 -21.01103 -19.55425 -19.25055 -18.89293 -17.80255 -17.29629 -16.91250 -16.75665 -16.27797 -15.94140 -15.61621 -15.22054 -14.97385 -14.84419 -14.55899 -14.13444 -13.91864 -13.79437 -13.66376 -13.63390 -13.45757 -13.29737 -12.93481 -12.77288 -12.70525 -12.60445 -12.57426 -12.29555 -11.85748 -11.83607 -11.65808 -11.52697 -11.17908 -10.90739 -9.76143 -9.65856 -9.41906 -9.16408 -8.41287 -6.52774 -0.63404 0.37481 0.83144 0.86344 1.17038 1.26793 1.36170 1.37307 1.47183 1.70666 2.19643 2.25479 2.26044 2.91161 3.45185 3.79857 3.85385 4.03169 4.11850 4.22567 4.35501 4.48836 4.57393 4.65054 4.70075 4.72988 4.77205 4.78486 4.86918 4.89543 4.91623 5.06469 5.07125 5.12034 5.17162 5.21782 5.36001 5.52674 5.76667 5.95386 6.07549 6.33111 6.50609 6.79653 6.90952 7.11003 8.75449 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026670 B = 0.002560 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.629050 B =10936.073314 C =11580.532248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.139 4.139 3 C -0.035 4.035 4 C -0.302 4.302 5 C 0.599 3.401 6 O -0.537 6.537 7 N -0.624 5.624 8 C 0.273 3.727 9 C -0.298 4.298 10 C 0.094 3.906 11 C -0.084 4.084 12 N -0.340 5.340 13 C 0.240 3.760 14 C -0.551 4.551 15 H 0.023 0.977 16 C 0.021 3.979 17 N -0.937 5.937 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.233 1.233 22 N -0.352 5.352 23 S 0.218 5.782 24 C -0.182 4.182 25 C -0.089 4.089 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.418 0.582 31 H 0.168 0.832 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.274 0.726 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.420 -10.845 9.933 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.150 4.150 3 C -0.069 4.069 4 C -0.422 4.422 5 C 0.388 3.612 6 O -0.414 6.414 7 N -0.272 5.272 8 C 0.019 3.981 9 C -0.328 4.328 10 C -0.037 4.037 11 C -0.142 4.142 12 N -0.122 5.122 13 C 0.121 3.879 14 C -0.589 4.589 15 H 0.041 0.959 16 C -0.178 4.178 17 N -0.576 5.576 18 Si 0.773 3.227 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.156 1.156 22 N -0.183 5.183 23 S 0.488 5.512 24 C -0.302 4.302 25 C -0.147 4.147 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.171 0.829 30 H 0.255 0.745 31 H 0.185 0.815 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.115 -11.767 9.814 26.089 hybrid contribution -0.688 1.054 -0.280 1.290 sum -21.804 -10.713 9.534 26.097 Atomic orbital electron populations 1.20579 0.87120 1.03931 1.03340 1.18915 0.99446 0.90339 1.06330 1.20852 0.90365 1.00991 0.94741 1.24020 0.97184 0.97633 1.23320 1.17295 0.80535 0.88168 0.75250 1.90731 1.81389 1.19389 1.49899 1.42359 1.03506 1.08475 1.72843 1.19214 0.88020 0.89743 1.01134 1.21453 0.98887 0.91041 1.21429 1.21778 0.88083 0.94925 0.98872 1.20530 1.04419 0.85297 1.03961 1.48481 1.07212 1.01736 1.54761 1.19836 0.72162 0.98811 0.97137 1.21237 0.94440 1.52159 0.91105 0.95891 1.25844 0.99727 0.93161 0.99109 1.70036 1.16660 1.49227 1.21633 0.85667 0.78428 0.79399 0.79237 1.19047 1.19879 1.15573 1.77175 1.04686 1.04984 1.31434 1.83027 1.04540 0.95657 1.68021 1.24567 0.97569 1.01898 1.06176 1.20591 1.02035 0.87728 1.04356 0.90147 0.89759 0.90974 0.82886 0.74487 0.81474 0.90248 0.87245 0.90156 0.90529 0.93249 0.91696 0.88978 0.90046 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.56 71.24 0.68 -0.18 16 2 C -0.14 -2.19 5.78 -21.05 -0.12 -2.31 16 3 C -0.03 -0.74 9.80 21.72 0.21 -0.53 16 4 C -0.30 -7.48 6.45 24.07 0.16 -7.33 16 5 C 0.60 19.54 7.75 86.41 0.67 20.21 16 6 O -0.54 -20.36 13.96 -4.41 -0.06 -20.43 16 7 N -0.62 -21.40 5.44 -311.20 -1.69 -23.09 16 8 C 0.27 11.63 8.11 133.35 1.08 12.71 16 9 C -0.30 -12.52 9.52 22.11 0.21 -12.31 16 10 C 0.09 3.93 6.92 41.38 0.29 4.21 16 11 C -0.08 -2.72 10.11 71.24 0.72 -2.00 16 12 N -0.34 -16.13 3.59 -338.44 -1.22 -17.35 16 13 C 0.24 11.55 5.06 85.63 0.43 11.98 16 14 C -0.55 -31.93 9.94 25.60 0.25 -31.68 16 15 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 16 C 0.02 1.20 5.47 84.65 0.46 1.67 16 17 N -0.94 -57.37 13.96 21.45 0.30 -57.07 16 18 Si 0.95 40.91 27.47 68.60 1.88 42.80 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.23 -8.79 6.54 99.48 0.65 -8.14 16 22 N -0.35 -16.75 12.59 -54.48 -0.69 -17.43 16 23 S 0.22 3.92 22.10 -56.49 -1.25 2.67 16 24 C -0.18 -2.61 6.28 24.68 0.15 -2.46 16 25 C -0.09 -0.65 9.67 71.24 0.69 0.04 16 26 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.52 7.20 -2.39 -0.02 0.50 16 28 H 0.07 0.66 8.13 -2.38 -0.02 0.64 16 29 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 30 H 0.42 12.14 7.94 -92.72 -0.74 11.40 16 31 H 0.17 6.80 5.90 -2.91 -0.02 6.78 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.11 2.76 8.14 -2.38 -0.02 2.75 16 34 H 0.08 2.44 7.07 -2.38 -0.02 2.42 16 35 H 0.08 3.26 6.09 -2.38 -0.01 3.25 16 36 H 0.05 2.32 7.57 -2.39 -0.02 2.31 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.10 0.43 7.25 -2.39 -0.02 0.41 16 Total: -1.00 -76.72 352.56 3.46 -73.26 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.29 Total: 24.60 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.89 Total: -7.96 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -3.30 Total: -114.94 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.43 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.80 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.25 Total: 2.67 kcal Total: -76.72 3.46 -73.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271118986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.136 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds