Wall clock time and date at job start Tue Mar 31 2020 12:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 10 10 C 1.53002 * 109.46988 * 300.00137 * 8 6 5 11 11 C 1.50703 * 109.46871 * 180.02562 * 8 6 5 12 12 C 1.33385 * 125.20223 * 239.72174 * 11 8 6 13 13 C 1.38424 * 114.91834 * 179.86265 * 12 11 8 14 14 C 1.33382 * 114.92437 * 0.42686 * 13 12 11 15 15 S 1.75880 * 109.59143 * 359.77331 * 14 13 12 16 16 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 17 17 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 18 18 C 1.46500 * 125.97897 * 359.96594 * 17 2 1 19 19 C 1.50698 * 109.46965 * 89.99833 * 18 17 2 20 20 H 1.08000 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99358 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00418 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47105 * 90.00179 * 23 21 19 25 25 H 1.48499 * 109.46684 * 210.00001 * 23 21 19 26 26 H 1.48496 * 109.47247 * 330.00058 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 30 30 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 31 31 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 32 32 H 1.09001 * 109.46475 * 180.02562 * 10 8 6 33 33 H 1.09004 * 109.47061 * 299.99629 * 10 8 6 34 34 H 1.08994 * 109.47377 * 60.00148 * 10 8 6 35 35 H 1.08001 * 122.53871 * 0.02562 * 12 11 8 36 36 H 1.08003 * 122.53585 * 180.19846 * 13 12 11 37 37 H 1.08004 * 125.20412 * 179.75219 * 14 13 12 38 38 H 1.08994 * 109.46840 * 210.00162 * 18 17 2 39 39 H 1.09004 * 109.46443 * 329.99889 * 18 17 2 40 40 H 0.96998 * 120.00265 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 1 6.4541 3.4989 -0.8699 10 6 6.6941 3.4041 1.2688 11 6 5.4343 5.1437 0.0300 12 6 5.7451 6.0420 -0.9057 13 6 5.2395 7.3118 -0.6860 14 6 4.5257 7.4468 0.4327 15 16 4.4599 5.9068 1.2797 16 7 3.6337 -0.6577 -0.0036 17 7 2.3016 -1.0910 -0.0059 18 6 1.8500 -2.4847 -0.0128 19 6 1.6945 -2.9553 -1.4359 20 1 1.9108 -2.2836 -2.2535 21 6 1.2760 -4.2434 -1.6941 22 7 1.0121 -5.0611 -0.6985 23 14 1.0838 -4.8270 -3.4582 24 1 2.3645 -5.4139 -3.9277 25 1 0.0141 -5.8548 -3.5257 26 1 0.7200 -3.6763 -4.3235 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1210 -0.0006 31 1 5.6584 1.0776 0.0055 32 1 7.5776 4.0424 1.2729 33 1 6.0985 3.6029 2.1599 34 1 7.0010 2.3583 1.2628 35 1 6.3435 5.7966 -1.7707 36 1 5.4131 8.1320 -1.3668 37 1 4.0597 8.3618 0.7673 38 1 2.5849 -3.1072 0.4976 39 1 0.8916 -2.5584 0.5012 40 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271167432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:34 Heat of formation + Delta-G solvation = 72.243758 kcal Electronic energy + Delta-G solvation = -23494.384451 eV Core-core repulsion = 20016.665410 eV Total energy + Delta-G solvation = -3477.719041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.81132 -39.63263 -37.82001 -34.87046 -34.21530 -33.29678 -31.39424 -30.80543 -28.76334 -26.76906 -26.34492 -25.13385 -23.78843 -22.75932 -21.16363 -19.83542 -19.51683 -19.18498 -17.30637 -16.73863 -16.57701 -16.07844 -15.73629 -15.32412 -15.13908 -14.48283 -14.18220 -14.08147 -13.73696 -13.20791 -13.04147 -12.86616 -12.50235 -12.48152 -12.43923 -12.32079 -12.11968 -11.92485 -11.72872 -11.65675 -11.41941 -11.08029 -10.84988 -10.74245 -10.44940 -10.25373 -9.93407 -9.58225 -9.53636 -8.80965 -8.65713 -8.45040 -7.94760 -7.46789 -6.26788 -4.34578 0.86242 1.55754 1.95138 2.29135 2.53920 2.84400 2.89916 3.20842 3.27107 3.32041 3.70139 3.85331 4.24011 4.29267 4.56165 4.72596 4.91300 4.97013 5.06836 5.28222 5.36149 5.41439 5.43221 5.50150 5.71123 5.77427 5.93609 5.95001 6.09467 6.13890 6.23513 6.33264 6.46705 6.54847 6.71624 6.92399 7.03976 7.43291 7.62863 7.66252 7.87641 8.04248 8.22037 8.63883 8.74018 9.31934 10.80448 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025938 B = 0.002610 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.256205 B =10723.896885 C =10865.488821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.263 3.737 5 N -0.629 5.629 6 C 0.518 3.482 7 O -0.501 6.501 8 C -0.035 4.035 9 H 0.117 0.883 10 C -0.146 4.146 11 C -0.159 4.159 12 C -0.137 4.137 13 C -0.137 4.137 14 C -0.225 4.225 15 S 0.144 5.856 16 N -0.320 5.320 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.410 0.590 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.394 21.238 3.585 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.010 3.990 5 N -0.276 5.276 6 C 0.302 3.698 7 O -0.373 6.373 8 C -0.059 4.059 9 H 0.135 0.865 10 C -0.204 4.204 11 C -0.277 4.277 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.361 4.361 15 S 0.409 5.591 16 N -0.151 5.151 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.177 0.823 31 H 0.245 0.755 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.528 19.766 4.997 22.100 hybrid contribution 0.571 0.482 -2.397 2.511 sum 9.099 20.248 2.601 22.351 Atomic orbital electron populations 1.20380 0.87928 1.03871 1.02532 1.21066 0.94922 0.87140 1.00843 1.21248 0.89733 0.99802 1.21251 1.18988 0.87205 0.89580 1.03204 1.42424 1.07561 1.04934 1.72713 1.20415 0.91170 0.81514 0.76653 1.90687 1.26367 1.73580 1.46704 1.19768 0.94971 0.88646 1.02494 0.86489 1.21895 0.99951 1.02867 0.95698 1.23866 1.05474 0.97799 1.00571 1.20054 1.03810 0.92797 1.00127 1.20057 1.00549 0.97878 0.98347 1.25713 1.07435 1.01816 1.01122 1.84362 1.50448 1.00428 1.23855 1.77249 0.99989 1.08492 1.29371 1.48998 1.00952 1.07790 1.52163 1.19688 0.95975 0.71321 0.98923 1.21326 1.46818 0.98001 0.91366 0.91751 1.24928 0.94655 0.96042 0.98141 1.69914 1.44875 1.06997 1.31155 0.86357 0.78021 0.78578 0.83753 1.20337 1.20858 1.19638 0.91076 0.89902 0.90630 0.82349 0.75493 0.90625 0.91606 0.90993 0.84466 0.84559 0.82134 0.93013 0.92791 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -5.97 9.52 -39.83 -0.38 -6.35 16 4 C 0.26 5.30 8.11 -154.38 -1.25 4.05 16 5 N -0.63 -9.51 5.34 -11.13 -0.06 -9.57 16 6 C 0.52 7.32 7.09 -10.98 -0.08 7.25 16 7 O -0.50 -8.71 12.38 5.55 0.07 -8.64 16 8 C -0.04 -0.35 3.10 -92.92 -0.29 -0.64 16 9 H 0.12 0.88 8.09 -51.93 -0.42 0.46 16 10 C -0.15 -1.13 9.01 37.16 0.33 -0.79 16 11 C -0.16 -1.72 4.60 -36.00 -0.17 -1.88 16 12 C -0.14 -1.34 10.01 -41.21 -0.41 -1.76 16 13 C -0.14 -1.27 10.18 -41.21 -0.42 -1.69 16 14 C -0.22 -2.13 11.23 29.04 0.33 -1.80 16 15 S 0.14 1.59 22.17 -107.50 -2.38 -0.79 16 16 N -0.32 -7.36 12.59 31.44 0.40 -6.96 16 17 N -0.32 -7.52 3.59 -58.33 -0.21 -7.73 16 18 C 0.26 6.63 5.81 -5.19 -0.03 6.60 16 19 C -0.54 -14.77 9.39 -34.44 -0.32 -15.09 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 23 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.16 3.20 5.92 -52.49 -0.31 2.89 16 31 H 0.41 4.90 8.24 -40.82 -0.34 4.56 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.57 8.00 -51.93 -0.42 0.16 16 34 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -32.72 356.58 -9.27 -41.99 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.18 Total: 4.75 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.00 Total: -10.21 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.86 Total: -48.52 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.38 Total: -0.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.72 -9.27 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271167432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.234 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds