Wall clock time and date at job start Tue Mar 31 2020 12:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 10 10 C 1.53002 * 109.46988 * 300.00137 * 8 6 5 11 11 C 1.50703 * 109.46871 * 180.02562 * 8 6 5 12 12 C 1.33385 * 125.20223 * 239.72174 * 11 8 6 13 13 C 1.38424 * 114.91834 * 179.86265 * 12 11 8 14 14 C 1.33382 * 114.92437 * 0.42686 * 13 12 11 15 15 S 1.75880 * 109.59143 * 359.77331 * 14 13 12 16 16 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 17 17 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 18 18 C 1.46500 * 125.97897 * 359.96594 * 17 2 1 19 19 C 1.50698 * 109.46965 * 89.99833 * 18 17 2 20 20 H 1.08000 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99358 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00418 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47105 * 90.00179 * 23 21 19 25 25 H 1.48499 * 109.46684 * 210.00001 * 23 21 19 26 26 H 1.48496 * 109.47247 * 330.00058 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 30 30 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 31 31 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 32 32 H 1.09001 * 109.46475 * 180.02562 * 10 8 6 33 33 H 1.09004 * 109.47061 * 299.99629 * 10 8 6 34 34 H 1.08994 * 109.47377 * 60.00148 * 10 8 6 35 35 H 1.08001 * 122.53871 * 0.02562 * 12 11 8 36 36 H 1.08003 * 122.53585 * 180.19846 * 13 12 11 37 37 H 1.08004 * 125.20412 * 179.75219 * 14 13 12 38 38 H 1.08994 * 109.46840 * 210.00162 * 18 17 2 39 39 H 1.09004 * 109.46443 * 329.99889 * 18 17 2 40 40 H 0.96998 * 120.00265 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 1 6.4541 3.4989 -0.8699 10 6 6.6941 3.4041 1.2688 11 6 5.4343 5.1437 0.0300 12 6 5.7451 6.0420 -0.9057 13 6 5.2395 7.3118 -0.6860 14 6 4.5257 7.4468 0.4327 15 16 4.4599 5.9068 1.2797 16 7 3.6337 -0.6577 -0.0036 17 7 2.3016 -1.0910 -0.0059 18 6 1.8500 -2.4847 -0.0128 19 6 1.6945 -2.9553 -1.4359 20 1 1.9108 -2.2836 -2.2535 21 6 1.2760 -4.2434 -1.6941 22 7 1.0121 -5.0611 -0.6985 23 14 1.0838 -4.8270 -3.4582 24 1 2.3645 -5.4139 -3.9277 25 1 0.0141 -5.8548 -3.5257 26 1 0.7200 -3.6763 -4.3235 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1210 -0.0006 31 1 5.6584 1.0776 0.0055 32 1 7.5776 4.0424 1.2729 33 1 6.0985 3.6029 2.1599 34 1 7.0010 2.3583 1.2628 35 1 6.3435 5.7966 -1.7707 36 1 5.4131 8.1320 -1.3668 37 1 4.0597 8.3618 0.7673 38 1 2.5849 -3.1072 0.4976 39 1 0.8916 -2.5584 0.5012 40 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271167432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:33 Heat of formation + Delta-G solvation = 53.288581 kcal Electronic energy + Delta-G solvation = -23495.206410 eV Core-core repulsion = 20016.665410 eV Total energy + Delta-G solvation = -3478.540999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33666 -40.89389 -38.61076 -36.34555 -35.42389 -34.86501 -32.93438 -32.60359 -29.51692 -28.60425 -27.88778 -26.06181 -25.09271 -24.19838 -22.37890 -21.28483 -20.67900 -20.21971 -18.81847 -18.32154 -17.78137 -17.41926 -16.97939 -16.67835 -16.27077 -16.19714 -15.64376 -15.30606 -14.73506 -14.57081 -14.31855 -13.96090 -13.82733 -13.65232 -13.60231 -13.53073 -13.20008 -13.16898 -13.09179 -12.83778 -12.70066 -12.59436 -12.43990 -12.25617 -12.09145 -11.55790 -11.49001 -11.34717 -10.83682 -10.74108 -9.59605 -9.56085 -9.26226 -9.14679 -8.33659 -6.51496 0.10821 0.80378 0.89526 1.20485 1.33045 1.37514 1.39176 1.41902 1.50777 1.90341 2.19434 2.29538 2.41835 2.96045 3.42334 3.61058 3.89557 4.02093 4.14333 4.24462 4.31489 4.45930 4.66136 4.73414 4.74269 4.77093 4.81477 4.85388 4.86221 4.97586 5.00215 5.12246 5.19445 5.24936 5.25174 5.42429 5.52737 5.64557 5.80071 5.93430 6.24799 6.26173 6.61059 6.96999 7.10589 7.19627 8.72348 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025938 B = 0.002610 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.256205 B =10723.896885 C =10865.488821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.299 4.299 4 C 0.273 3.727 5 N -0.621 5.621 6 C 0.517 3.483 7 O -0.533 6.533 8 C -0.024 4.024 9 H 0.148 0.852 10 C -0.144 4.144 11 C -0.175 4.175 12 C -0.136 4.136 13 C -0.144 4.144 14 C -0.222 4.222 15 S 0.091 5.909 16 N -0.357 5.357 17 N -0.343 5.343 18 C 0.276 3.724 19 C -0.554 4.554 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.270 1.270 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.425 0.575 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.181 0.819 38 H 0.025 0.975 39 H 0.051 0.949 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.332 22.771 2.239 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.330 4.330 4 C 0.019 3.981 5 N -0.271 5.271 6 C 0.304 3.696 7 O -0.407 6.407 8 C -0.047 4.047 9 H 0.166 0.834 10 C -0.201 4.201 11 C -0.292 4.292 12 C -0.167 4.167 13 C -0.174 4.174 14 C -0.358 4.358 15 S 0.356 5.644 16 N -0.187 5.187 17 N -0.125 5.125 18 C 0.157 3.843 19 C -0.592 4.592 20 H 0.067 0.933 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.194 1.194 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.182 0.818 31 H 0.263 0.737 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.198 0.802 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.495 21.322 3.663 23.626 hybrid contribution 0.318 0.173 -1.950 1.983 sum 9.813 21.494 1.714 23.690 Atomic orbital electron populations 1.20496 0.85489 1.04320 1.04074 1.21733 0.96629 0.86511 0.99484 1.21416 0.90084 0.99797 1.21674 1.19339 0.88843 0.89207 1.00693 1.42590 1.06914 1.05004 1.72594 1.21349 0.92303 0.81052 0.74901 1.90663 1.28214 1.73981 1.47873 1.19837 0.93032 0.87026 1.04811 0.83428 1.21925 1.00049 1.04201 0.93970 1.24010 1.06172 0.98355 1.00712 1.20422 1.03272 0.92776 1.00197 1.20418 0.99976 0.98507 0.98527 1.25990 1.07412 1.01471 1.00912 1.84538 1.51846 1.02538 1.25521 1.77171 0.99997 1.09972 1.31579 1.48789 1.01788 1.07487 1.54460 1.19237 0.94879 0.72411 0.97774 1.21434 1.47589 0.98402 0.91745 0.93274 1.25730 0.93916 0.95880 1.02264 1.69995 1.45021 1.07445 1.33131 0.85360 0.78304 0.78198 0.78664 1.19930 1.19498 1.19442 0.88911 0.91404 0.88088 0.81789 0.73675 0.88475 0.93047 0.89708 0.82231 0.82108 0.80189 0.95711 0.93114 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.92 9.89 71.24 0.70 -2.22 16 2 C 0.09 3.71 6.92 41.38 0.29 4.00 16 3 C -0.30 -12.36 9.52 22.11 0.21 -12.15 16 4 C 0.27 11.06 8.11 133.33 1.08 12.15 16 5 N -0.62 -18.24 5.34 -307.50 -1.64 -19.88 16 6 C 0.52 14.02 7.09 87.66 0.62 14.64 16 7 O -0.53 -18.29 12.38 -3.05 -0.04 -18.32 16 8 C -0.02 -0.42 3.10 -12.28 -0.04 -0.46 16 9 H 0.15 1.68 8.09 -2.39 -0.02 1.66 16 10 C -0.14 -1.90 9.01 71.98 0.65 -1.25 16 11 C -0.17 -3.45 4.60 24.59 0.11 -3.34 16 12 C -0.14 -2.29 10.01 21.22 0.21 -2.08 16 13 C -0.14 -2.29 10.18 21.21 0.22 -2.07 16 14 C -0.22 -3.84 11.23 66.72 0.75 -3.09 16 15 S 0.09 1.97 22.17 -56.49 -1.25 0.71 16 16 N -0.36 -16.74 12.59 -54.44 -0.69 -17.42 16 17 N -0.34 -16.73 3.59 -338.45 -1.22 -17.94 16 18 C 0.28 14.68 5.81 85.63 0.50 15.17 16 19 C -0.55 -31.16 9.39 25.60 0.24 -30.92 16 20 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 21 C 0.02 1.27 5.46 84.66 0.46 1.73 16 22 N -0.92 -51.90 13.29 21.45 0.28 -51.62 16 23 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 29 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.16 6.60 5.92 -2.91 -0.02 6.58 16 31 H 0.42 9.59 8.24 -92.71 -0.76 8.82 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.84 8.00 -2.38 -0.02 0.82 16 34 H 0.08 0.90 7.56 -2.39 -0.02 0.88 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 2.68 7.65 -2.39 -0.02 2.66 16 40 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -71.97 356.58 3.79 -68.18 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.30 Total: 21.07 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 6.01 Total: -9.89 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.26 Total: -106.86 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.04 Total: -18.32 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.25 Total: 0.71 kcal Total: -71.97 3.79 -68.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271167432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.472 kcal (2) G-P(sol) polarization free energy of solvation -71.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds