Wall clock time and date at job start Tue Mar 31 2020 12:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29414 * 125.70297 * 2 1 4 4 N 1.26391 * 116.48373 * 179.75565 * 3 2 1 5 5 C 1.29424 * 116.46907 * 0.53260 * 4 3 2 6 6 C 1.50698 * 125.69305 * 179.77156 * 5 4 3 7 7 N 1.46498 * 109.47488 * 89.69377 * 6 5 4 8 8 C 1.39664 * 120.00039 * 179.97438 * 7 6 5 9 9 C 1.38973 * 120.04703 * 359.97438 * 8 7 6 10 10 C 1.38116 * 120.03003 * 180.02562 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 S 1.71215 * 108.60751 * 359.51077 * 5 4 3 26 26 H 1.09005 * 109.46818 * 269.95262 * 1 2 3 27 27 H 1.08997 * 109.47319 * 29.94627 * 1 2 3 28 28 H 1.09000 * 109.47598 * 149.95790 * 1 2 3 29 29 H 1.09006 * 109.47342 * 329.69173 * 6 5 4 30 30 H 1.09008 * 109.46640 * 209.69650 * 6 5 4 31 31 H 0.97000 * 119.99514 * 359.97438 * 7 6 5 32 32 H 1.07996 * 119.98294 * 0.04458 * 9 8 7 33 33 H 1.08007 * 119.92769 * 179.97438 * 10 9 8 34 34 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 35 35 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 36 36 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 37 37 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 38 38 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 39 39 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 40 40 H 1.08006 * 120.06150 * 180.23058 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5098 0.8484 0.0048 5 6 3.8936 -0.3876 -0.0015 6 6 5.3232 -0.8643 -0.0025 7 7 5.7873 -1.0194 1.3783 8 6 7.0899 -1.4544 1.6325 9 6 7.9464 -1.7409 0.5763 10 6 9.2344 -2.1715 0.8282 11 6 9.6764 -2.3137 2.1300 12 6 8.8238 -2.0342 3.1886 13 8 9.2585 -2.1791 4.4680 14 6 10.6027 -2.6287 4.6495 15 6 10.9087 -2.7310 6.1451 16 6 12.3265 -3.2045 6.3366 17 1 12.9474 -3.4114 5.4774 18 6 12.8314 -3.3727 7.6085 19 7 12.0754 -3.1203 8.6547 20 14 14.5886 -3.9604 7.8458 21 1 15.2228 -4.1726 6.5200 22 1 15.3547 -2.9377 8.6025 23 1 14.5854 -5.2374 8.6036 24 6 7.5305 -1.6017 2.9404 25 16 2.5060 -1.3906 -0.0013 26 1 -0.3633 -0.0008 1.0277 27 1 -0.3634 0.8904 -0.5130 28 1 -0.3634 -0.8896 -0.5145 29 1 5.9492 -0.1347 -0.5164 30 1 5.3860 -1.8233 -0.5169 31 1 5.1898 -0.8200 2.1160 32 1 7.6049 -1.6264 -0.4418 33 1 9.8985 -2.3941 0.0060 34 1 10.6854 -2.6465 2.3235 35 1 10.7240 -3.6079 4.1864 36 1 11.2887 -1.9198 4.1857 37 1 10.7873 -1.7520 6.6087 38 1 10.2228 -3.4400 6.6087 39 1 12.4308 -3.2383 9.5496 40 1 6.8668 -1.3802 3.7631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271352347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:42 Heat of formation + Delta-G solvation = 23.293198 kcal Electronic energy + Delta-G solvation = -22167.768276 eV Core-core repulsion = 18687.926579 eV Total energy + Delta-G solvation = -3479.841697 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46000 -41.03212 -39.14299 -36.60342 -35.42681 -34.15235 -32.57617 -31.82843 -30.54887 -29.29615 -27.48440 -26.83257 -25.38202 -23.89740 -23.17733 -21.82610 -20.93541 -20.43450 -19.40599 -18.36910 -17.67130 -17.12716 -16.90751 -16.89888 -16.57474 -16.42973 -15.85326 -15.49602 -15.35099 -14.54890 -14.36611 -14.34333 -14.28811 -14.13070 -14.03763 -13.87870 -13.33475 -13.17993 -13.09587 -12.69592 -12.51050 -12.48075 -11.97997 -11.70777 -11.56033 -11.53526 -11.36067 -11.31576 -10.91442 -10.90680 -10.70064 -10.62263 -9.22881 -8.44310 -8.26261 -6.39867 -0.74084 -0.18667 0.24333 0.56836 0.67508 1.32586 1.41603 1.42706 1.56342 2.16195 2.39366 2.69923 2.84263 2.95773 3.08218 3.44486 3.77087 3.99596 4.08979 4.25242 4.27987 4.30251 4.34676 4.44070 4.46141 4.50459 4.58632 4.68385 4.70005 4.75975 4.95373 5.04642 5.25024 5.33385 5.47809 5.51968 5.61022 5.67242 5.74546 6.07455 6.28510 6.53517 6.65646 6.75356 7.30300 7.41673 8.87161 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.001821 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.859058 B =15368.810428 C =15921.481216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.019 4.019 3 N -0.307 5.307 4 N -0.275 5.275 5 C -0.056 4.056 6 C 0.212 3.788 7 N -0.740 5.740 8 C 0.254 3.746 9 C -0.232 4.232 10 C -0.030 4.030 11 C -0.277 4.277 12 C 0.151 3.849 13 O -0.343 6.343 14 C 0.087 3.913 15 C 0.027 3.973 16 C -0.545 4.545 17 H 0.072 0.928 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.978 3.022 21 H -0.257 1.257 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.249 4.249 25 S 0.255 5.745 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.401 0.599 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.059 0.941 37 H -0.003 1.003 38 H -0.002 1.002 39 H 0.266 0.734 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.749 1.105 -24.583 33.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.297 4.297 3 N -0.146 5.146 4 N -0.114 5.114 5 C -0.335 4.335 6 C 0.085 3.915 7 N -0.371 5.371 8 C 0.151 3.849 9 C -0.254 4.254 10 C -0.048 4.048 11 C -0.298 4.298 12 C 0.105 3.895 13 O -0.257 6.257 14 C 0.012 3.988 15 C -0.011 4.011 16 C -0.583 4.583 17 H 0.090 0.910 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.801 3.199 21 H -0.180 1.180 22 H -0.203 1.203 23 H -0.202 1.202 24 C -0.272 4.272 25 S 0.499 5.501 26 H 0.124 0.876 27 H 0.115 0.885 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.236 0.764 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.141 0.859 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.075 0.925 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.852 1.506 -24.440 33.494 hybrid contribution 0.765 0.235 1.176 1.423 sum -22.087 1.741 -23.264 32.126 Atomic orbital electron populations 1.20684 0.81191 1.06304 1.05823 1.30028 1.06257 0.92111 1.01276 1.71488 0.97060 1.28609 1.17420 1.71443 1.07318 1.18762 1.13861 1.29247 1.04205 0.93051 1.07043 1.19779 0.84502 1.02631 0.84603 1.44453 1.10993 1.74854 1.06816 1.17284 0.84752 0.90966 0.91909 1.20807 0.94551 1.11553 0.98486 1.20997 0.95408 0.93011 0.95419 1.21274 1.01016 1.13857 0.93608 1.19134 0.93514 0.93399 0.83485 1.86056 1.32673 1.81810 1.25188 1.22844 0.78939 0.98170 0.98828 1.18986 0.96276 0.95956 0.89843 1.21439 0.97662 1.45905 0.93251 0.91022 1.26065 1.03128 0.95168 0.95461 1.70137 1.38675 1.49414 0.98878 0.85211 0.78010 0.77871 0.78807 1.18039 1.20305 1.20197 1.19742 0.95337 1.15812 0.96343 1.83603 0.94913 1.08995 1.62633 0.87565 0.88459 0.86849 0.88501 0.86817 0.76403 0.82932 0.82870 0.85923 0.92052 0.92243 0.98476 0.98317 0.92475 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.48 71.23 0.75 0.39 16 2 C -0.02 -0.24 7.53 88.46 0.67 0.42 16 3 N -0.31 -6.52 11.66 -50.85 -0.59 -7.11 16 4 N -0.28 -6.14 11.66 -50.85 -0.59 -6.73 16 5 C -0.06 -0.88 6.90 88.46 0.61 -0.27 16 6 C 0.21 2.82 5.51 85.63 0.47 3.29 16 7 N -0.74 -13.59 5.72 -343.18 -1.96 -15.56 16 8 C 0.25 6.08 6.65 38.20 0.25 6.33 16 9 C -0.23 -4.79 9.31 22.42 0.21 -4.58 16 10 C -0.03 -0.69 10.03 22.24 0.22 -0.47 16 11 C -0.28 -8.62 9.04 22.39 0.20 -8.42 16 12 C 0.15 5.50 6.68 22.49 0.15 5.65 16 13 O -0.34 -15.17 10.13 -92.39 -0.94 -16.10 16 14 C 0.09 3.91 4.68 71.98 0.34 4.24 16 15 C 0.03 1.49 5.34 29.85 0.16 1.65 16 16 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 17 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 20 Si 0.98 43.90 29.54 68.60 2.03 45.92 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 C -0.25 -7.78 9.83 22.49 0.22 -7.56 16 25 S 0.25 2.47 23.04 -56.49 -1.30 1.17 16 26 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.10 1.29 7.95 -2.38 -0.02 1.27 16 30 H 0.11 0.91 7.95 -2.38 -0.02 0.89 16 31 H 0.40 7.44 8.47 -92.71 -0.79 6.65 16 32 H 0.15 2.05 6.73 -2.91 -0.02 2.03 16 33 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.12 3.83 6.29 -2.91 -0.02 3.82 16 35 H 0.06 2.60 7.67 -2.39 -0.02 2.58 16 36 H 0.06 2.54 7.65 -2.39 -0.02 2.52 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.12 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -75.88 358.49 2.16 -73.72 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.29 Total: 11.56 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 4.95 Total: -29.82 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.86 Total: -86.46 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.94 Total: -16.10 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.30 Total: 1.17 kcal Total: -75.88 2.16 -73.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271352347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.015 kcal (2) G-P(sol) polarization free energy of solvation -75.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds