Wall clock time and date at job start Tue Mar 31 2020 12:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29413 * 125.69662 * 2 1 4 4 N 1.26398 * 116.47444 * 179.68034 * 3 2 1 5 5 C 1.29414 * 116.47310 * 0.53161 * 4 3 2 6 6 C 1.50704 * 125.69370 * 179.77304 * 5 4 3 7 7 H 1.09002 * 109.46621 * 164.69356 * 6 5 4 8 8 C 1.53005 * 109.46805 * 284.68845 * 6 5 4 9 9 N 1.46896 * 109.47451 * 44.69021 * 6 5 4 10 10 C 1.46905 * 111.00155 * 154.99865 * 9 6 5 11 11 C 1.50698 * 109.47044 * 180.02562 * 10 9 6 12 12 C 1.38297 * 119.93202 * 90.00061 * 11 10 9 13 13 C 1.38101 * 120.07230 * 180.02562 * 12 11 10 14 14 C 1.38886 * 119.92536 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47448 * 89.99502 * 20 18 16 22 22 H 1.48501 * 109.47175 * 209.99712 * 20 18 16 23 23 H 1.48506 * 109.47415 * 329.99678 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 S 1.71216 * 108.60915 * 359.50669 * 5 4 3 27 27 H 1.08995 * 109.47112 * 270.04570 * 1 2 3 28 28 H 1.09003 * 109.47242 * 30.04208 * 1 2 3 29 29 H 1.08999 * 109.47043 * 150.03943 * 1 2 3 30 30 H 1.08997 * 109.47390 * 300.00142 * 8 6 5 31 31 H 1.08995 * 109.46882 * 60.00503 * 8 6 5 32 32 H 1.09001 * 109.46864 * 180.02562 * 8 6 5 33 33 H 1.00902 * 110.99547 * 31.04453 * 9 6 5 34 34 H 1.09003 * 109.46647 * 59.99968 * 10 9 6 35 35 H 1.09004 * 109.46926 * 300.00194 * 10 9 6 36 36 H 1.07999 * 119.96698 * 0.02562 * 12 11 10 37 37 H 1.07992 * 120.03608 * 179.97438 * 13 12 11 38 38 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 40 40 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8484 0.0063 5 6 3.8936 -0.3875 0.0013 6 6 5.3232 -0.8642 0.0023 7 1 5.3537 -1.9207 0.2686 8 6 5.9258 -0.6719 -1.3909 9 7 6.0971 -0.0897 0.9816 10 6 7.2637 -0.8496 1.4504 11 6 8.0308 -0.0251 2.4518 12 6 7.7233 -0.1119 3.7973 13 6 8.4241 0.6427 4.7175 14 6 9.4390 1.4890 4.2902 15 8 10.1301 2.2317 5.1923 16 6 9.8611 2.0173 6.4960 17 1 9.0678 1.3417 6.7798 18 6 10.6032 2.6643 7.4725 19 7 11.5700 3.4869 7.1269 20 14 10.2311 2.3667 9.2786 21 1 11.0432 1.2244 9.7697 22 1 10.5659 3.5842 10.0601 23 1 8.7884 2.0548 9.4421 24 6 9.7420 1.5780 2.9379 25 6 9.0413 0.8164 2.0233 26 16 2.5060 -1.3905 0.0010 27 1 -0.3633 0.0008 1.0276 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3633 -0.8903 -0.5132 30 1 5.3516 -1.2466 -2.1176 31 1 5.8953 0.3846 -1.6573 32 1 6.9597 -1.0171 -1.3904 33 1 5.5169 0.1964 1.7560 34 1 7.9080 -1.0852 0.6033 35 1 6.9298 -1.7742 1.9212 36 1 6.9342 -0.7706 4.1289 37 1 8.1832 0.5747 5.7680 38 1 12.0888 3.9397 7.8099 39 1 10.5277 2.2385 2.6022 40 1 9.2794 0.8818 0.9720 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273560831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:41 Heat of formation + Delta-G solvation = 61.105845 kcal Electronic energy + Delta-G solvation = -22801.753404 eV Core-core repulsion = 19323.551387 eV Total energy + Delta-G solvation = -3478.202017 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.58584 -39.09347 -37.58367 -36.20740 -33.40242 -32.36377 -31.52093 -30.14337 -28.83176 -28.50962 -25.89766 -25.50423 -24.24382 -22.52926 -21.94003 -20.46996 -19.63407 -19.47597 -17.97332 -17.11702 -16.39631 -16.17956 -15.39501 -14.90403 -14.76405 -14.51939 -14.27421 -14.03633 -13.62079 -13.58758 -13.54287 -13.39399 -13.05565 -12.70240 -12.63609 -12.53570 -12.26706 -12.05066 -11.70662 -11.43733 -11.25490 -10.83572 -10.69725 -10.64299 -10.58270 -10.44093 -10.41163 -10.03324 -9.88734 -9.32678 -8.83231 -8.49533 -8.14944 -7.17550 -6.44249 -4.02969 0.10491 0.54207 1.01384 2.24538 2.26809 2.33770 3.13096 3.13771 3.18702 3.59480 3.97263 4.06113 4.14726 4.51015 4.67053 4.68199 4.92483 4.94299 5.10989 5.12865 5.16917 5.29094 5.30265 5.39497 5.40930 5.50031 5.60320 5.72094 5.80571 5.90825 6.06470 6.23298 6.44155 6.72008 6.87026 6.94798 7.06312 7.25306 7.29275 7.41809 7.46066 7.84716 8.00837 8.32071 9.01306 9.71878 10.73786 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002356 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.263257 B =11882.831418 C =12712.419919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.019 4.019 3 N -0.261 5.261 4 N -0.231 5.231 5 C -0.017 4.017 6 C 0.168 3.832 7 H 0.064 0.936 8 C -0.135 4.135 9 N -0.665 5.665 10 C 0.117 3.883 11 C -0.186 4.186 12 C -0.065 4.065 13 C -0.235 4.235 14 C 0.157 3.843 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.194 4.194 25 C -0.049 4.049 26 S 0.155 5.845 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.348 0.652 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.270 0.730 39 H 0.117 0.883 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.816 -13.632 -14.869 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.298 4.298 3 N -0.099 5.099 4 N -0.067 5.067 5 C -0.297 4.297 6 C 0.054 3.946 7 H 0.082 0.918 8 C -0.194 4.194 9 N -0.298 5.298 10 C -0.010 4.010 11 C -0.188 4.188 12 C -0.084 4.084 13 C -0.254 4.254 14 C 0.103 3.897 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.214 4.214 25 C -0.068 4.068 26 S 0.398 5.602 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.167 0.833 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.082 -12.594 -15.238 26.791 hybrid contribution -0.677 -0.677 1.612 1.875 sum -18.760 -13.270 -13.626 26.715 Atomic orbital electron populations 1.20389 0.83934 1.04677 1.04440 1.29294 1.04333 0.91767 1.04404 1.71549 0.97091 1.26682 1.14582 1.71455 1.05748 1.16685 1.12817 1.29417 1.02673 0.92579 1.05034 1.20087 0.82605 0.95346 0.96547 0.91808 1.21814 1.00970 1.03657 0.92994 1.60699 1.09698 1.41025 1.18413 1.20742 0.90956 0.92932 0.96406 1.19022 1.01787 1.04960 0.93004 1.20570 0.97689 0.97616 0.92490 1.21104 1.00978 1.03099 1.00242 1.19416 0.90524 0.89454 0.90292 1.83980 1.55723 1.52503 1.15826 1.21322 1.18530 1.28489 0.78459 0.89110 1.25293 0.95318 0.95882 1.00051 1.70037 1.19164 1.26148 1.34338 0.85713 0.78973 0.78204 0.80538 1.19888 1.20239 1.19231 1.20229 1.04810 1.05610 0.90713 1.20461 0.94212 0.94227 0.97853 1.83669 0.98215 1.12292 1.65994 0.89029 0.88738 0.89736 0.92622 0.90802 0.90992 0.83274 0.90631 0.95246 0.88054 0.85667 0.92011 0.86514 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.48 36.01 0.38 0.00 16 2 C -0.02 -0.18 7.53 -13.30 -0.10 -0.28 16 3 N -0.26 -3.45 11.66 32.58 0.38 -3.07 16 4 N -0.23 -3.25 11.64 32.58 0.38 -2.87 16 5 C -0.02 -0.19 6.03 -13.29 -0.08 -0.27 16 6 C 0.17 1.71 3.13 -68.86 -0.22 1.50 16 7 H 0.06 0.53 7.80 -51.93 -0.41 0.13 16 8 C -0.14 -1.26 9.40 37.16 0.35 -0.91 16 9 N -0.66 -8.55 6.28 -109.21 -0.69 -9.23 16 10 C 0.12 1.51 5.61 -4.97 -0.03 1.48 16 11 C -0.19 -3.14 5.40 -104.58 -0.56 -3.70 16 12 C -0.06 -1.18 9.69 -39.61 -0.38 -1.56 16 13 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 14 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 15 O -0.18 -5.12 9.76 0.05 0.00 -5.12 16 16 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 20 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 25 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 26 S 0.15 1.22 23.04 -107.50 -2.48 -1.25 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.61 7.45 -51.93 -0.39 0.23 16 33 H 0.35 4.88 8.34 -39.29 -0.33 4.55 16 34 H 0.08 0.88 7.38 -51.93 -0.38 0.50 16 35 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 36 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -33.11 357.67 -8.13 -41.24 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.00 Total: 5.29 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -1.85 Total: -21.28 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.83 Total: -39.92 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.48 Total: -1.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.11 -8.13 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273560831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.345 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds