Wall clock time and date at job start Tue Mar 31 2020 12:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37976 * 119.95221 * 2 1 4 4 C 1.39332 * 119.90719 * 179.97438 * 3 2 1 5 5 C 1.48382 * 120.09492 * 179.97438 * 4 3 2 6 6 N 1.30781 * 126.42028 * 359.71549 * 5 4 3 7 7 O 1.21289 * 110.09861 * 179.80747 * 6 5 4 8 8 C 1.33672 * 110.02695 * 0.45498 * 7 6 5 9 9 C 1.50695 * 126.43307 * 179.71137 * 8 7 6 10 10 H 1.09002 * 109.47397 * 165.00181 * 9 8 7 11 11 C 1.53004 * 109.47469 * 285.00896 * 9 8 7 12 12 N 1.46505 * 109.46989 * 45.00472 * 9 8 7 13 13 C 1.34775 * 119.99775 * 154.99464 * 12 9 8 14 14 O 1.21689 * 120.00393 * 0.02562 * 13 12 9 15 15 C 1.46377 * 120.00102 * 180.02562 * 13 12 9 16 16 H 1.08001 * 119.99778 * 0.02562 * 15 13 12 17 17 C 1.40047 * 120.00280 * 180.02562 * 15 13 12 18 18 N 1.30676 * 119.99858 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99877 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47376 * 89.99853 * 19 17 15 21 21 H 1.48504 * 109.46860 * 209.99646 * 19 17 15 22 22 H 1.48490 * 109.47258 * 329.99818 * 19 17 15 23 23 N 1.30975 * 107.13057 * 359.72037 * 8 7 6 24 24 C 1.39378 * 119.81313 * 359.97438 * 4 3 2 25 25 C 1.37931 * 119.90329 * 0.02562 * 24 4 3 26 26 C 1.38542 * 119.95502 * 180.02562 * 2 1 3 27 27 F 1.35102 * 119.90919 * 0.27569 * 26 2 1 28 28 H 1.08997 * 109.47089 * 269.99711 * 1 2 3 29 29 H 1.08997 * 109.47709 * 30.00004 * 1 2 3 30 30 H 1.09004 * 109.47100 * 150.00228 * 1 2 3 31 31 H 1.08003 * 120.04662 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47104 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.46813 * 299.99814 * 11 9 8 34 34 H 1.08992 * 109.47161 * 59.99801 * 11 9 8 35 35 H 0.97000 * 120.00388 * 335.00345 * 12 9 8 36 36 H 0.96998 * 119.99613 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.04758 * 180.02562 * 24 4 3 38 38 H 1.07999 * 119.95337 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1955 0.0000 4 6 3.5892 1.1944 0.0005 5 6 4.3342 2.4776 0.0000 6 7 3.8140 3.6775 -0.0063 7 8 4.6932 4.5130 -0.0010 8 6 5.8902 3.9179 -0.0006 9 6 7.2313 4.6052 -0.0009 10 1 8.0074 3.8877 0.2655 11 6 7.5149 5.1695 -1.3945 12 7 7.2204 5.6976 0.9753 13 6 8.3758 6.1226 1.5239 14 8 9.4280 5.5993 1.2081 15 6 8.3649 7.2137 2.4996 16 1 7.4310 7.6779 2.7802 17 6 9.5655 7.6557 3.0693 18 7 10.6954 7.0937 2.7301 19 14 9.5514 9.0476 4.3150 20 1 9.3979 8.4873 5.6817 21 1 10.8282 9.8012 4.2295 22 1 8.4172 9.9608 4.0241 23 7 5.6785 2.6254 0.0000 24 6 4.2812 -0.0155 0.0016 25 6 3.5847 -1.2060 0.0016 26 6 2.1987 -1.2004 -0.0005 27 9 1.5205 -2.3688 -0.0067 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6558 2.1308 -0.0004 32 1 8.4852 5.6662 -1.3948 33 1 7.5230 4.3567 -2.1208 34 1 6.7389 5.8870 -1.6608 35 1 6.3817 6.1150 1.2269 36 1 11.5269 7.3996 3.1250 37 1 5.3611 -0.0207 0.0025 38 1 4.1200 -2.1440 0.0029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274969316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:54 Heat of formation + Delta-G solvation = 2.412070 kcal Electronic energy + Delta-G solvation = -25106.013029 eV Core-core repulsion = 21059.052683 eV Total energy + Delta-G solvation = -4046.960346 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.27529 -45.50674 -39.54572 -37.87453 -35.91276 -34.82848 -33.25014 -32.63996 -32.14191 -30.47428 -29.61866 -27.44854 -26.27473 -24.78884 -24.58691 -23.06622 -21.92338 -20.94719 -19.56219 -18.07142 -18.01899 -17.86282 -17.29157 -16.58715 -16.04989 -15.99997 -15.55937 -14.98081 -14.51981 -14.49553 -13.85756 -13.73842 -13.67660 -13.53313 -13.50488 -13.12643 -12.83338 -12.56024 -12.46004 -12.26575 -12.01142 -11.82199 -11.55672 -11.46416 -11.25022 -11.14472 -11.03610 -10.87946 -10.57721 -10.32309 -10.18268 -9.32702 -8.94990 -8.75312 -7.88757 -7.79831 -6.30116 -4.76122 0.32275 0.83071 1.27850 2.26657 2.83682 3.09856 3.17065 3.20097 3.29753 3.32519 3.80033 3.84922 4.04906 4.30823 4.36160 4.45322 4.62408 4.75639 4.81530 5.05984 5.08887 5.21032 5.33005 5.37123 5.46052 5.54463 5.63551 5.70587 5.76291 5.79500 5.82591 5.94952 5.99249 6.07824 6.23961 6.43682 6.54669 7.34303 7.63777 7.82093 8.13146 8.18289 8.91812 9.28745 10.43987 10.62662 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025451 B = 0.002335 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.907344 B =11989.627910 C =12139.548741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.122 4.122 3 C -0.058 4.058 4 C -0.020 4.020 5 C 0.205 3.795 6 N -0.379 5.379 7 O 0.085 5.915 8 C 0.206 3.794 9 C 0.244 3.756 10 H 0.123 0.877 11 C -0.158 4.158 12 N -0.761 5.761 13 C 0.557 3.443 14 O -0.574 6.574 15 C -0.540 4.540 16 H 0.070 0.930 17 C 0.087 3.913 18 N -0.764 5.764 19 Si 0.910 3.090 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 N -0.475 5.475 24 C -0.052 4.052 25 C -0.151 4.151 26 C 0.111 3.889 27 F -0.135 7.135 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.387 0.613 36 H 0.270 0.730 37 H 0.148 0.852 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.488 -11.974 -6.321 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.123 4.123 3 C -0.078 4.078 4 C -0.022 4.022 5 C -0.065 4.065 6 N -0.086 5.086 7 O 0.025 5.975 8 C -0.015 4.015 9 C 0.135 3.865 10 H 0.141 0.859 11 C -0.217 4.217 12 N -0.419 5.419 13 C 0.363 3.637 14 O -0.456 6.456 15 C -0.577 4.577 16 H 0.089 0.911 17 C -0.133 4.133 18 N -0.393 5.393 19 Si 0.734 3.266 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.188 1.188 23 N -0.208 5.208 24 C -0.072 4.072 25 C -0.170 4.170 26 C 0.091 3.909 27 F -0.113 7.113 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.219 0.781 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.247 -12.669 -6.535 21.614 hybrid contribution -0.407 0.750 0.767 1.147 sum -16.654 -11.919 -5.769 21.277 Atomic orbital electron populations 1.20736 0.89550 1.03588 1.03130 1.19810 0.97369 0.91327 1.03817 1.20936 0.92268 0.97987 0.96596 1.17343 0.91846 0.88081 1.04953 1.23765 0.87402 0.93222 1.02084 1.74845 1.13213 0.99386 1.21114 1.85269 1.13108 1.33882 1.65247 1.29468 0.91468 0.87359 0.93242 1.19180 0.83843 0.91146 0.92295 0.85908 1.22240 1.04127 1.01158 0.94205 1.46393 1.11567 1.37293 1.46622 1.18264 0.80851 0.83635 0.80981 1.90624 1.30135 1.59923 1.64943 1.20837 0.94192 1.18021 1.24641 0.91140 1.25709 0.94922 0.96560 0.96103 1.70004 0.98388 1.35587 1.35284 0.86329 0.78404 0.81033 0.80790 1.19699 1.20379 1.18812 1.72000 1.12837 1.15080 1.20874 1.21112 1.01303 0.89732 0.95011 1.21094 0.91993 0.99819 1.04049 1.17702 0.90029 0.80966 1.02225 1.91494 1.80188 1.46014 1.93637 0.90522 0.90669 0.90954 0.84103 0.89418 0.92247 0.92168 0.78087 0.91901 0.83397 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.83 36.00 0.35 -0.45 16 2 C -0.12 -1.17 5.88 -104.61 -0.62 -1.78 16 3 C -0.06 -0.62 9.34 -39.27 -0.37 -0.99 16 4 C -0.02 -0.25 5.88 -104.89 -0.62 -0.87 16 5 C 0.21 3.11 7.80 -156.10 -1.22 1.89 16 6 N -0.38 -5.90 11.86 30.97 0.37 -5.53 16 7 O 0.08 1.34 11.11 18.03 0.20 1.54 16 8 C 0.21 3.37 7.24 -12.99 -0.09 3.28 16 9 C 0.24 4.35 3.12 -69.08 -0.22 4.14 16 10 H 0.12 2.42 7.58 -51.93 -0.39 2.03 16 11 C -0.16 -2.46 9.47 37.16 0.35 -2.11 16 12 N -0.76 -15.73 5.06 -56.34 -0.29 -16.01 16 13 C 0.56 14.71 7.71 -12.99 -0.10 14.61 16 14 O -0.57 -17.19 14.68 5.20 0.08 -17.11 16 15 C -0.54 -14.44 9.54 -35.63 -0.34 -14.78 16 16 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 17 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 18 N -0.76 -21.88 11.83 55.55 0.66 -21.22 16 19 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 23 N -0.47 -7.74 11.26 -9.88 -0.11 -7.85 16 24 C -0.05 -0.57 9.70 -39.27 -0.38 -0.95 16 25 C -0.15 -1.42 10.01 -39.56 -0.40 -1.81 16 26 C 0.11 1.09 7.24 -39.34 -0.28 0.81 16 27 F -0.13 -1.34 16.46 2.25 0.04 -1.30 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.07 0.48 7.63 -51.93 -0.40 0.08 16 31 H 0.14 1.42 7.87 -52.48 -0.41 1.01 16 32 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.39 7.18 8.42 -40.82 -0.34 6.83 16 36 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 37 H 0.15 1.57 7.87 -52.49 -0.41 1.16 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -31.79 345.61 -6.93 -38.72 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.04 Total: 6.00 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -4.02 Total: 3.22 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.63 Total: -50.62 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.28 Total: -15.57 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.79 -6.93 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274969316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.129 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds