Wall clock time and date at job start Tue Mar 31 2020 12:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37976 * 119.95441 * 2 1 4 4 C 1.39339 * 119.90411 * 180.02562 * 3 2 1 5 5 C 1.48376 * 120.09380 * 180.02562 * 4 3 2 6 6 N 1.30785 * 126.41633 * 359.66764 * 5 4 3 7 7 O 1.21288 * 110.09585 * 179.80604 * 6 5 4 8 8 C 1.33673 * 110.02590 * 0.46417 * 7 6 5 9 9 C 1.50703 * 126.43510 * 179.74836 * 8 7 6 10 10 H 1.08996 * 109.47639 * 194.95766 * 9 8 7 11 11 C 1.53004 * 109.46977 * 74.95530 * 9 8 7 12 12 N 1.46501 * 109.47107 * 314.95960 * 9 8 7 13 13 C 1.34773 * 120.00012 * 205.00101 * 12 9 8 14 14 O 1.21693 * 120.00016 * 359.97438 * 13 12 9 15 15 C 1.46374 * 120.00268 * 180.02562 * 13 12 9 16 16 H 1.08004 * 119.99386 * 353.93190 * 15 13 12 17 17 C 1.40046 * 120.00288 * 173.93823 * 15 13 12 18 18 N 1.30672 * 120.00270 * 6.14664 * 17 15 13 19 19 Si 1.86797 * 120.00145 * 186.14720 * 17 15 13 20 20 H 1.48503 * 109.47391 * 94.98040 * 19 17 15 21 21 H 1.48500 * 109.47239 * 214.98292 * 19 17 15 22 22 H 1.48503 * 109.47181 * 334.98260 * 19 17 15 23 23 N 1.30975 * 107.13309 * 359.71344 * 8 7 6 24 24 C 1.39379 * 119.81312 * 0.02562 * 4 3 2 25 25 C 1.37942 * 119.90269 * 359.97438 * 24 4 3 26 26 C 1.38546 * 119.95125 * 180.02562 * 2 1 3 27 27 F 1.35102 * 119.90523 * 0.26139 * 26 2 1 28 28 H 1.09003 * 109.46984 * 269.98359 * 1 2 3 29 29 H 1.08997 * 109.46728 * 29.98354 * 1 2 3 30 30 H 1.09005 * 109.47293 * 149.98070 * 1 2 3 31 31 H 1.07995 * 120.04675 * 0.04333 * 3 2 1 32 32 H 1.09002 * 109.47227 * 300.00141 * 11 9 8 33 33 H 1.09005 * 109.46999 * 60.00135 * 11 9 8 34 34 H 1.08998 * 109.46973 * 180.02562 * 11 9 8 35 35 H 0.96996 * 119.99783 * 24.99771 * 12 9 8 36 36 H 0.96994 * 120.00620 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.04798 * 180.02562 * 24 4 3 38 38 H 1.08001 * 119.94601 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1955 0.0000 4 6 3.5893 1.1942 -0.0005 5 6 4.3344 2.4773 0.0000 6 7 3.8142 3.6773 -0.0051 7 8 4.6935 4.5127 0.0010 8 6 5.8904 3.9176 0.0006 9 6 7.2316 4.6047 0.0016 10 1 8.0078 3.8872 -0.2642 11 6 7.5145 5.1691 1.3953 12 7 7.2214 5.6970 -0.9746 13 6 8.3771 6.1219 -1.5226 14 8 9.4292 5.5986 -1.2061 15 6 8.3670 7.2137 -2.4975 16 1 7.4279 7.6128 -2.8515 17 6 9.5750 7.7405 -2.9715 18 7 10.7076 7.1810 -2.6374 19 14 9.5671 9.2431 -4.0811 20 1 9.7649 10.4653 -3.2610 21 1 10.6652 9.1306 -5.0745 22 1 8.2650 9.3282 -4.7901 23 7 5.6786 2.6251 0.0000 24 6 4.2812 -0.0157 -0.0016 25 6 3.5845 -1.2063 -0.0016 26 6 2.1987 -1.2004 -0.0005 27 9 1.5203 -2.3687 -0.0064 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6560 2.1307 0.0007 32 1 6.7383 5.8868 1.6612 33 1 7.5221 4.3564 2.1217 34 1 8.4844 5.6665 1.3959 35 1 6.3829 6.1144 -1.2266 36 1 11.5443 7.5461 -2.9653 37 1 5.3612 -0.0211 -0.0016 38 1 4.1200 -2.1442 -0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274969319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:55 Heat of formation + Delta-G solvation = -18.879977 kcal Electronic energy + Delta-G solvation = -25103.356695 eV Core-core repulsion = 21055.473056 eV Total energy + Delta-G solvation = -4047.883639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.05607 -46.75279 -40.37114 -39.73581 -37.18979 -36.45308 -34.60323 -34.02330 -33.52459 -31.66848 -31.02300 -28.23214 -28.14260 -25.92377 -25.86179 -24.14747 -22.91174 -22.34380 -21.16712 -19.70643 -19.29331 -18.73665 -18.57564 -17.64600 -17.43375 -17.02692 -16.81874 -16.45438 -16.21555 -15.33233 -15.24854 -15.17571 -14.55816 -14.46989 -14.44526 -14.33556 -14.01574 -13.79585 -13.70359 -13.54706 -13.36787 -12.97997 -12.86163 -12.77483 -12.65144 -12.59277 -12.52870 -12.33582 -12.04483 -11.99515 -11.42078 -10.91798 -10.10177 -9.91348 -9.72475 -9.63648 -8.30642 -6.85358 -0.63543 0.04374 0.05529 1.14744 1.43317 1.44223 1.49827 1.59902 2.10543 2.28701 2.44221 2.46768 2.61759 3.05546 3.06557 3.50329 3.58044 3.64126 3.71004 3.99417 4.09080 4.13613 4.17914 4.26419 4.53303 4.58760 4.66816 4.70108 4.71009 4.76793 4.84278 4.98883 5.10491 5.15141 5.19890 5.20970 5.34653 5.66307 5.83725 5.97373 6.21774 6.87152 6.87884 7.40722 8.43276 8.64740 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026455 B = 0.002322 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.134859 B =12056.245315 C =12220.759449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.120 4.120 3 C -0.058 4.058 4 C -0.046 4.046 5 C 0.209 3.791 6 N -0.385 5.385 7 O 0.084 5.916 8 C 0.206 3.794 9 C 0.249 3.751 10 H 0.101 0.899 11 C -0.149 4.149 12 N -0.750 5.750 13 C 0.548 3.452 14 O -0.619 6.619 15 C -0.569 4.569 16 H 0.088 0.912 17 C 0.033 3.967 18 N -0.816 5.816 19 Si 0.995 3.005 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.251 1.251 23 N -0.483 5.483 24 C -0.056 4.056 25 C -0.144 4.144 26 C 0.109 3.891 27 F -0.133 7.133 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.399 0.601 36 H 0.276 0.724 37 H 0.147 0.853 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.608 -12.059 6.155 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.121 4.121 3 C -0.078 4.078 4 C -0.048 4.048 5 C -0.061 4.061 6 N -0.092 5.092 7 O 0.026 5.974 8 C -0.016 4.016 9 C 0.141 3.859 10 H 0.119 0.881 11 C -0.208 4.208 12 N -0.407 5.407 13 C 0.353 3.647 14 O -0.505 6.505 15 C -0.605 4.605 16 H 0.106 0.894 17 C -0.183 4.183 18 N -0.445 5.445 19 Si 0.814 3.186 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.174 1.174 23 N -0.217 5.217 24 C -0.076 4.076 25 C -0.162 4.162 26 C 0.089 3.911 27 F -0.112 7.112 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.165 0.835 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.429 -12.755 6.368 23.300 hybrid contribution 0.140 0.672 -0.555 0.883 sum -18.289 -12.083 5.814 22.678 Atomic orbital electron populations 1.20827 0.87704 1.04449 1.04077 1.20058 0.98708 0.90705 1.02601 1.20994 0.91578 0.98736 0.96501 1.17519 0.92603 0.87436 1.07236 1.24212 0.86982 0.94038 1.00832 1.74831 1.12933 0.99571 1.21904 1.85262 1.12775 1.33972 1.65401 1.28973 0.91120 0.87444 0.94043 1.19073 0.84277 0.89895 0.92699 0.88114 1.22141 1.03219 1.02167 0.93267 1.45966 1.10604 1.37611 1.46492 1.18479 0.81417 0.83434 0.81322 1.90585 1.32208 1.60851 1.66870 1.21370 0.94687 1.18715 1.25742 0.89389 1.26883 0.94171 1.00538 0.96726 1.70152 0.99199 1.37617 1.37529 0.85041 0.79266 0.76753 0.77494 1.18695 1.19934 1.17417 1.71997 1.13758 1.14929 1.21003 1.21153 1.01377 0.89799 0.95247 1.21298 0.91991 1.00182 1.02755 1.17846 0.90299 0.81130 1.01861 1.91503 1.80158 1.45940 1.93565 0.89368 0.89599 0.90422 0.83667 0.90424 0.89711 0.91910 0.76713 0.91411 0.83500 0.81452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.83 71.24 0.70 -0.64 16 2 C -0.12 -2.05 5.88 -19.85 -0.12 -2.16 16 3 C -0.06 -1.17 9.34 22.47 0.21 -0.96 16 4 C -0.05 -1.11 5.88 -20.04 -0.12 -1.23 16 5 C 0.21 6.21 7.80 137.27 1.07 7.28 16 6 N -0.38 -11.68 11.86 -59.10 -0.70 -12.39 16 7 O 0.08 2.61 11.11 74.58 0.83 3.44 16 8 C 0.21 6.69 7.24 88.36 0.64 7.33 16 9 C 0.25 9.01 3.12 44.25 0.14 9.15 16 10 H 0.10 4.15 7.58 -2.39 -0.02 4.13 16 11 C -0.15 -4.63 9.47 71.98 0.68 -3.95 16 12 N -0.75 -31.45 5.06 -450.39 -2.28 -33.73 16 13 C 0.55 29.71 7.71 86.36 0.67 30.38 16 14 O -0.62 -38.60 14.71 -4.33 -0.06 -38.66 16 15 C -0.57 -30.65 9.53 24.83 0.24 -30.41 16 16 H 0.09 4.27 7.86 -2.91 -0.02 4.25 16 17 C 0.03 1.75 5.49 85.30 0.47 2.22 16 18 N -0.82 -47.82 11.85 21.83 0.26 -47.56 16 19 Si 0.99 39.44 29.56 68.60 2.03 41.47 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 23 N -0.48 -15.65 11.26 -302.46 -3.40 -19.06 16 24 C -0.06 -1.16 9.70 22.47 0.22 -0.94 16 25 C -0.14 -2.42 10.01 22.28 0.22 -2.20 16 26 C 0.11 1.91 7.24 22.43 0.16 2.08 16 27 F -0.13 -2.33 16.46 44.97 0.74 -1.59 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.08 0.85 7.63 -2.38 -0.02 0.83 16 31 H 0.15 2.74 7.87 -2.91 -0.02 2.71 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.40 14.76 8.42 -92.71 -0.78 13.98 16 36 H 0.28 14.65 8.29 -92.71 -0.77 13.89 16 37 H 0.15 3.03 7.87 -2.91 -0.02 3.01 16 38 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -69.84 345.66 2.93 -66.91 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.35 Total: 25.24 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 5.18 Total: 15.94 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -6.13 Total: -112.73 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: 0.77 Total: -35.23 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.74 Total: -1.59 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -69.84 2.93 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274969319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.027 kcal (2) G-P(sol) polarization free energy of solvation -69.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds