Wall clock time and date at job start Tue Mar 31 2020 12:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46954 * 221.71925 * 3 2 1 5 5 C 1.37105 * 120.00052 * 268.76631 * 4 3 2 6 6 H 1.07994 * 119.99614 * 135.54210 * 5 4 3 7 7 C 1.38952 * 119.99767 * 315.54236 * 5 4 3 8 8 N 1.31408 * 120.00117 * 345.01091 * 7 5 4 9 9 Si 1.86802 * 119.99704 * 165.00884 * 7 5 4 10 10 H 1.48503 * 109.46877 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46856 * 119.99721 * 9 7 5 12 12 H 1.48493 * 109.46997 * 239.99930 * 9 7 5 13 13 C 1.34773 * 120.00188 * 88.76332 * 4 3 2 14 14 O 1.21290 * 119.99576 * 355.87793 * 13 4 3 15 15 C 1.50692 * 120.00142 * 176.14904 * 13 4 3 16 16 C 1.53000 * 109.47387 * 311.83584 * 15 13 4 17 17 C 1.52995 * 109.47341 * 71.84163 * 15 13 4 18 18 C 1.53004 * 109.47048 * 191.83898 * 15 13 4 19 19 C 1.50701 * 109.47123 * 179.97438 * 18 15 13 20 20 C 1.38265 * 119.99474 * 269.72330 * 19 18 15 21 21 C 1.38223 * 120.02314 * 179.76954 * 20 19 18 22 22 C 1.38236 * 120.01350 * 0.50430 * 21 20 19 23 23 C 1.38323 * 119.98768 * 359.75179 * 22 21 20 24 24 Cl 1.73599 * 120.01290 * 180.02562 * 23 22 21 25 25 C 1.38191 * 119.99000 * 90.00114 * 19 18 15 26 26 H 4.40637 * 5.51495 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.47392 * 101.72477 * 3 2 1 28 28 H 1.09000 * 109.48037 * 341.71999 * 3 2 1 29 29 H 0.96997 * 119.99793 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46627 * 67.96231 * 16 15 13 31 31 H 1.08996 * 109.47487 * 187.96198 * 16 15 13 32 32 H 1.09003 * 109.47444 * 307.96407 * 16 15 13 33 33 H 1.08998 * 109.47289 * 67.76757 * 17 15 13 34 34 H 1.08997 * 109.47544 * 187.77579 * 17 15 13 35 35 H 1.09003 * 109.46854 * 307.77225 * 17 15 13 36 36 H 1.08995 * 109.47222 * 300.00057 * 18 15 13 37 37 H 1.08997 * 109.47373 * 60.00006 * 18 15 13 38 38 H 1.07990 * 119.98703 * 0.02562 * 20 19 18 39 39 H 1.08006 * 119.98832 * 180.25986 * 21 20 19 40 40 H 1.08000 * 120.00439 * 179.76882 * 22 21 20 41 41 H 1.07998 * 120.01269 * 359.95089 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0319 0.9192 5 6 3.3859 2.2981 0.4576 6 1 3.0534 3.1554 1.0240 7 6 4.0690 2.4781 -0.7389 8 7 4.7262 1.4758 -1.2776 9 14 4.0531 4.1452 -1.5817 10 1 3.2478 5.0988 -0.7772 11 1 5.4438 4.6518 -1.7028 12 1 3.4558 4.0102 -2.9344 13 6 3.3348 0.7360 2.2186 14 8 3.0414 -0.3618 2.6429 15 6 3.9184 1.7709 3.1456 16 6 5.1547 2.3972 2.4973 17 6 2.8773 2.8591 3.4152 18 6 4.3158 1.1071 4.4656 19 6 4.8999 2.1419 5.3924 20 6 6.2600 2.3906 5.3814 21 6 6.7957 3.3430 6.2278 22 6 5.9734 4.0400 7.0932 23 6 4.6135 3.7879 7.1084 24 17 3.5801 4.6633 8.1944 25 6 4.0769 2.8380 6.2571 26 1 -1.0501 -0.0001 -0.0003 27 1 3.0093 0.2097 -1.0062 28 1 3.0099 -0.9749 0.3223 29 1 5.2033 1.6016 -2.1127 30 1 4.8515 2.9888 1.6335 31 1 5.6575 3.0401 3.2196 32 1 5.8357 1.6087 2.1768 33 1 2.0574 2.4409 3.9992 34 1 3.3398 3.6749 3.9705 35 1 2.4927 3.2367 2.4677 36 1 3.4351 0.6609 4.9275 37 1 5.0575 0.3318 4.2736 38 1 6.9033 1.8435 4.7083 39 1 7.8577 3.5398 6.2158 40 1 6.3927 4.7815 7.7571 41 1 3.0151 2.6411 6.2683 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281613676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:50 Heat of formation + Delta-G solvation = 37.770283 kcal Electronic energy + Delta-G solvation = -24800.164488 eV Core-core repulsion = 21286.614107 eV Total energy + Delta-G solvation = -3513.550381 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97854 -38.80972 -36.55628 -35.35734 -34.89627 -32.51395 -31.52037 -30.83417 -30.61951 -26.92969 -26.61775 -25.98924 -24.96782 -22.52827 -22.16199 -20.59374 -18.71197 -17.97705 -16.69608 -16.63818 -15.75315 -15.47394 -15.22035 -14.88537 -14.53149 -14.10294 -13.78220 -13.75325 -13.27330 -13.21745 -12.97116 -12.64022 -12.17040 -12.08840 -11.81065 -11.66361 -11.53045 -11.43403 -11.36637 -11.18825 -11.04096 -10.90505 -10.73719 -10.62132 -10.41998 -10.16960 -10.03669 -9.66303 -9.35363 -8.95003 -8.78380 -8.52994 -8.35583 -7.59644 -6.47970 -4.21414 1.22670 1.33563 2.13447 3.04727 3.16748 3.18851 3.47307 3.68486 3.70813 3.84316 4.07184 4.70282 4.84932 4.85609 4.97130 5.17871 5.33638 5.35707 5.42449 5.49962 5.54989 5.74335 5.82190 5.96575 6.13669 6.20943 6.26864 6.31274 6.36829 6.39785 6.56252 6.60572 6.60714 6.73586 6.76010 6.81990 6.91037 6.95556 6.99579 7.39449 7.41852 7.85834 8.25638 8.44765 8.96989 9.37497 9.82472 10.55677 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.004044 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.713059 B = 6921.685153 C = 7561.582069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.151 4.151 3 C 0.211 3.789 4 N -0.435 5.435 5 C -0.333 4.333 6 H 0.098 0.902 7 C 0.046 3.954 8 N -0.860 5.860 9 Si 0.908 3.092 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.492 3.508 14 O -0.600 6.600 15 C -0.049 4.049 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.060 4.060 19 C -0.047 4.047 20 C -0.107 4.107 21 C -0.109 4.109 22 C -0.124 4.124 23 C -0.034 4.034 24 Cl -0.082 7.082 25 C -0.107 4.107 26 H 0.206 0.794 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.271 0.729 30 H 0.105 0.895 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 5.134 10.508 11.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.152 4.152 3 C 0.088 3.912 4 N -0.153 5.153 5 C -0.461 4.461 6 H 0.115 0.885 7 C -0.161 4.161 8 N -0.496 5.496 9 Si 0.734 3.266 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.281 3.719 14 O -0.485 6.485 15 C -0.052 4.052 16 C -0.205 4.205 17 C -0.201 4.201 18 C -0.098 4.098 19 C -0.047 4.047 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.142 4.142 23 C -0.060 4.060 24 Cl -0.053 7.053 25 C -0.125 4.125 26 H 0.223 0.777 27 H 0.140 0.860 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.325 4.628 10.611 11.807 hybrid contribution -0.297 0.955 -0.507 1.121 sum 2.028 5.583 10.104 11.720 Atomic orbital electron populations 1.24588 0.95633 1.03518 1.04111 1.24406 0.95528 0.97718 0.97546 1.18449 0.81504 0.92814 0.98407 1.43208 1.56084 1.10248 1.05761 1.19530 1.35637 0.83437 1.07468 0.88503 1.25461 0.94003 0.98498 0.98094 1.69851 1.28491 1.31855 1.19426 0.86160 0.78327 0.82404 0.79705 1.19007 1.20444 1.20420 1.20435 0.79937 0.87543 0.83944 1.90532 1.56285 1.24805 1.76883 1.20230 0.97177 0.95030 0.92760 1.22195 0.95172 1.01245 1.01926 1.21991 0.97804 0.97666 1.02629 1.20528 1.01254 0.94889 0.93129 1.19961 0.93194 0.96522 0.95040 1.21252 0.94940 0.97964 0.98396 1.21068 0.99718 0.96208 0.95693 1.20941 0.91497 1.01176 1.00613 1.20879 0.91433 0.97668 0.96049 1.98353 1.67852 1.75595 1.63504 1.21001 1.00605 0.95618 0.95297 0.77672 0.86044 0.90254 0.91872 0.87696 0.94065 0.93344 0.93512 0.92581 0.90497 0.90433 0.90547 0.85246 0.85380 0.85503 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.12 19.25 29.55 0.57 -4.55 16 2 C -0.15 -3.39 13.67 -37.13 -0.51 -3.89 16 3 C 0.21 4.98 5.41 -6.83 -0.04 4.95 16 4 N -0.44 -10.38 2.43 -117.94 -0.29 -10.67 16 5 C -0.33 -7.75 5.50 -14.93 -0.08 -7.84 16 6 H 0.10 2.19 4.59 -52.49 -0.24 1.95 16 7 C 0.05 1.07 4.82 -17.47 -0.08 0.99 16 8 N -0.86 -21.06 11.60 55.50 0.64 -20.41 16 9 Si 0.91 18.41 29.58 -169.99 -5.03 13.38 16 10 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 11 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 C 0.49 11.44 6.43 -10.99 -0.07 11.37 16 14 O -0.60 -15.35 15.62 5.55 0.09 -15.26 16 15 C -0.05 -0.93 0.52 -155.66 -0.08 -1.01 16 16 C -0.15 -2.77 7.51 37.16 0.28 -2.49 16 17 C -0.14 -2.52 7.42 37.15 0.28 -2.25 16 18 C -0.06 -1.02 3.83 -27.88 -0.11 -1.12 16 19 C -0.05 -0.67 4.03 -104.63 -0.42 -1.09 16 20 C -0.11 -1.38 7.72 -39.58 -0.31 -1.69 16 21 C -0.11 -1.22 10.05 -39.59 -0.40 -1.61 16 22 C -0.12 -1.41 9.83 -39.55 -0.39 -1.80 16 23 C -0.03 -0.43 6.32 -39.50 -0.25 -0.68 16 24 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16 25 C -0.11 -1.45 7.87 -39.55 -0.31 -1.76 16 26 H 0.21 3.10 7.80 -54.08 -0.42 2.68 16 27 H 0.12 2.96 5.82 -51.93 -0.30 2.66 16 28 H 0.08 1.90 7.52 -51.93 -0.39 1.51 16 29 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 30 H 0.10 2.15 4.70 -51.93 -0.24 1.91 16 31 H 0.04 0.67 5.65 -51.93 -0.29 0.37 16 32 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.06 0.89 6.73 -51.93 -0.35 0.54 16 35 H 0.08 1.45 5.14 -51.93 -0.27 1.19 16 36 H 0.08 1.35 7.91 -51.93 -0.41 0.94 16 37 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 38 H 0.13 1.58 8.03 -52.49 -0.42 1.16 16 39 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.13 1.74 8.02 -52.49 -0.42 1.32 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -26.95 350.37 -7.73 -34.68 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.01 Total: 9.95 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.92 Total: -14.48 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.36 Total: -31.08 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.09 Total: -15.26 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.95 -7.73 -34.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281613676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.452 kcal (2) G-P(sol) polarization free energy of solvation -26.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds