Wall clock time and date at job start Tue Mar 31 2020 12:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46954 * 221.71925 * 3 2 1 5 5 C 1.37105 * 120.00052 * 268.76631 * 4 3 2 6 6 H 1.07994 * 119.99614 * 135.54210 * 5 4 3 7 7 C 1.38952 * 119.99767 * 315.54236 * 5 4 3 8 8 N 1.31408 * 120.00117 * 345.01091 * 7 5 4 9 9 Si 1.86802 * 119.99704 * 165.00884 * 7 5 4 10 10 H 1.48503 * 109.46877 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46856 * 119.99721 * 9 7 5 12 12 H 1.48493 * 109.46997 * 239.99930 * 9 7 5 13 13 C 1.34773 * 120.00188 * 88.76332 * 4 3 2 14 14 O 1.21290 * 119.99576 * 355.87793 * 13 4 3 15 15 C 1.50692 * 120.00142 * 176.14904 * 13 4 3 16 16 C 1.53000 * 109.47387 * 311.83584 * 15 13 4 17 17 C 1.52995 * 109.47341 * 71.84163 * 15 13 4 18 18 C 1.53004 * 109.47048 * 191.83898 * 15 13 4 19 19 C 1.50701 * 109.47123 * 179.97438 * 18 15 13 20 20 C 1.38265 * 119.99474 * 269.72330 * 19 18 15 21 21 C 1.38223 * 120.02314 * 179.76954 * 20 19 18 22 22 C 1.38236 * 120.01350 * 0.50430 * 21 20 19 23 23 C 1.38323 * 119.98768 * 359.75179 * 22 21 20 24 24 Cl 1.73599 * 120.01290 * 180.02562 * 23 22 21 25 25 C 1.38191 * 119.99000 * 90.00114 * 19 18 15 26 26 H 4.40637 * 5.51495 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.47392 * 101.72477 * 3 2 1 28 28 H 1.09000 * 109.48037 * 341.71999 * 3 2 1 29 29 H 0.96997 * 119.99793 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46627 * 67.96231 * 16 15 13 31 31 H 1.08996 * 109.47487 * 187.96198 * 16 15 13 32 32 H 1.09003 * 109.47444 * 307.96407 * 16 15 13 33 33 H 1.08998 * 109.47289 * 67.76757 * 17 15 13 34 34 H 1.08997 * 109.47544 * 187.77579 * 17 15 13 35 35 H 1.09003 * 109.46854 * 307.77225 * 17 15 13 36 36 H 1.08995 * 109.47222 * 300.00057 * 18 15 13 37 37 H 1.08997 * 109.47373 * 60.00006 * 18 15 13 38 38 H 1.07990 * 119.98703 * 0.02562 * 20 19 18 39 39 H 1.08006 * 119.98832 * 180.25986 * 21 20 19 40 40 H 1.08000 * 120.00439 * 179.76882 * 22 21 20 41 41 H 1.07998 * 120.01269 * 359.95089 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0319 0.9192 5 6 3.3859 2.2981 0.4576 6 1 3.0534 3.1554 1.0240 7 6 4.0690 2.4781 -0.7389 8 7 4.7262 1.4758 -1.2776 9 14 4.0531 4.1452 -1.5817 10 1 3.2478 5.0988 -0.7772 11 1 5.4438 4.6518 -1.7028 12 1 3.4558 4.0102 -2.9344 13 6 3.3348 0.7360 2.2186 14 8 3.0414 -0.3618 2.6429 15 6 3.9184 1.7709 3.1456 16 6 5.1547 2.3972 2.4973 17 6 2.8773 2.8591 3.4152 18 6 4.3158 1.1071 4.4656 19 6 4.8999 2.1419 5.3924 20 6 6.2600 2.3906 5.3814 21 6 6.7957 3.3430 6.2278 22 6 5.9734 4.0400 7.0932 23 6 4.6135 3.7879 7.1084 24 17 3.5801 4.6633 8.1944 25 6 4.0769 2.8380 6.2571 26 1 -1.0501 -0.0001 -0.0003 27 1 3.0093 0.2097 -1.0062 28 1 3.0099 -0.9749 0.3223 29 1 5.2033 1.6016 -2.1127 30 1 4.8515 2.9888 1.6335 31 1 5.6575 3.0401 3.2196 32 1 5.8357 1.6087 2.1768 33 1 2.0574 2.4409 3.9992 34 1 3.3398 3.6749 3.9705 35 1 2.4927 3.2367 2.4677 36 1 3.4351 0.6609 4.9275 37 1 5.0575 0.3318 4.2736 38 1 6.9033 1.8435 4.7083 39 1 7.8577 3.5398 6.2158 40 1 6.3927 4.7815 7.7571 41 1 3.0151 2.6411 6.2683 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281613676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:49 Heat of formation + Delta-G solvation = 26.476572 kcal Electronic energy + Delta-G solvation = -24800.654220 eV Core-core repulsion = 21286.614107 eV Total energy + Delta-G solvation = -3514.040113 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41726 -40.14661 -37.57740 -37.00698 -36.48459 -34.21446 -33.17652 -32.07484 -31.66953 -28.54215 -28.04628 -27.48233 -26.76596 -23.59207 -23.41305 -21.97404 -20.43112 -19.60760 -18.33080 -17.66889 -17.35649 -16.73669 -16.52237 -16.37750 -16.10264 -15.78159 -15.25230 -14.86027 -14.76355 -14.52987 -14.19852 -13.95947 -13.81300 -13.74085 -13.46146 -13.15839 -12.89106 -12.87690 -12.75874 -12.45062 -12.36285 -12.17658 -12.10232 -11.99118 -11.73602 -11.65559 -11.60569 -11.33808 -11.08331 -10.71981 -10.18022 -9.76363 -9.52844 -9.45492 -8.28051 -6.06351 0.24857 0.36391 1.19390 1.42488 1.50504 1.60246 1.79278 2.01459 2.04599 2.36810 2.69444 3.07343 3.14102 3.74445 3.80910 3.90880 4.00974 4.11296 4.20664 4.29478 4.39116 4.48456 4.55948 4.66674 4.77453 4.85141 4.89687 4.92766 5.05198 5.06093 5.08540 5.17986 5.20371 5.28303 5.30089 5.38979 5.45757 5.63960 5.68414 5.81595 5.91758 6.05113 6.42952 6.78331 7.14510 7.54894 8.00717 8.76960 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.004044 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.713059 B = 6921.685153 C = 7561.582069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.218 4.218 3 C 0.214 3.786 4 N -0.442 5.442 5 C -0.338 4.338 6 H 0.106 0.894 7 C 0.011 3.989 8 N -0.891 5.891 9 Si 0.967 3.033 10 H -0.256 1.256 11 H -0.276 1.276 12 H -0.283 1.283 13 C 0.476 3.524 14 O -0.634 6.634 15 C -0.045 4.045 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.050 4.050 19 C -0.060 4.060 20 C -0.115 4.115 21 C -0.100 4.100 22 C -0.117 4.117 23 C -0.041 4.041 24 Cl -0.075 7.075 25 C -0.114 4.114 26 H 0.254 0.746 27 H 0.108 0.892 28 H 0.059 0.941 29 H 0.272 0.728 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.132 0.868 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 7.561 11.723 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.220 4.220 3 C 0.091 3.909 4 N -0.159 5.159 5 C -0.465 4.465 6 H 0.123 0.877 7 C -0.193 4.193 8 N -0.528 5.528 9 Si 0.791 3.209 10 H -0.180 1.180 11 H -0.201 1.201 12 H -0.209 1.209 13 C 0.267 3.733 14 O -0.521 6.521 15 C -0.047 4.047 16 C -0.192 4.192 17 C -0.190 4.190 18 C -0.088 4.088 19 C -0.060 4.060 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.136 4.136 23 C -0.068 4.068 24 Cl -0.047 7.047 25 C -0.133 4.133 26 H 0.270 0.730 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.150 0.850 39 H 0.177 0.823 40 H 0.170 0.830 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.306 7.067 11.827 13.969 hybrid contribution -0.341 0.148 -0.845 0.923 sum 1.965 7.214 10.982 13.286 Atomic orbital electron populations 1.25614 0.96460 1.00137 1.00733 1.24434 0.96012 1.00860 1.00661 1.18170 0.83068 0.91995 0.97621 1.43446 1.55911 1.10512 1.06078 1.19782 1.35553 0.83377 1.07761 0.87695 1.26142 0.93460 1.01314 0.98353 1.69954 1.29334 1.33690 1.19808 0.85254 0.78363 0.78937 0.78333 1.17958 1.20102 1.20931 1.21270 0.79597 0.88149 0.84318 1.90489 1.57750 1.26429 1.77460 1.20230 0.97383 0.94350 0.92783 1.22033 0.94718 1.00552 1.01881 1.21892 0.97474 0.97604 1.02079 1.20327 1.00505 0.95345 0.92603 1.19690 0.94040 0.96740 0.95568 1.21381 0.94292 0.98596 0.99073 1.21387 1.01249 0.94818 0.94362 1.21288 0.90877 1.01036 1.00371 1.20985 0.92204 0.97558 0.96009 1.98357 1.67839 1.75302 1.63161 1.20975 1.00504 0.96121 0.95694 0.72955 0.87466 0.92245 0.91816 0.89352 0.91295 0.95390 0.93359 0.90458 0.91894 0.91693 0.91850 0.84973 0.82304 0.83049 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.96 19.25 74.32 1.43 -6.53 16 2 C -0.22 -9.98 13.67 31.12 0.43 -9.55 16 3 C 0.21 10.67 5.41 84.57 0.46 11.13 16 4 N -0.44 -21.90 2.43 -645.42 -1.57 -23.46 16 5 C -0.34 -15.95 5.50 84.04 0.46 -15.49 16 6 H 0.11 4.73 4.59 -2.91 -0.01 4.72 16 7 C 0.01 0.51 4.82 84.93 0.41 0.92 16 8 N -0.89 -44.87 11.60 21.66 0.25 -44.62 16 9 Si 0.97 37.48 29.58 68.60 2.03 39.51 16 10 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 11 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 12 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 13 C 0.48 23.00 6.43 87.66 0.56 23.57 16 14 O -0.63 -34.03 15.62 -3.06 -0.05 -34.08 16 15 C -0.04 -1.71 0.52 -52.93 -0.03 -1.74 16 16 C -0.13 -5.05 7.51 71.98 0.54 -4.50 16 17 C -0.13 -4.61 7.42 71.98 0.53 -4.08 16 18 C -0.05 -1.71 3.83 29.85 0.11 -1.60 16 19 C -0.06 -1.66 4.03 -19.87 -0.08 -1.74 16 20 C -0.12 -2.75 7.72 22.27 0.17 -2.57 16 21 C -0.10 -1.89 10.05 22.27 0.22 -1.67 16 22 C -0.12 -2.26 9.83 22.29 0.22 -2.04 16 23 C -0.04 -0.94 6.32 22.32 0.14 -0.80 16 24 Cl -0.08 -1.61 28.96 -2.72 -0.08 -1.68 16 25 C -0.11 -2.95 7.87 22.29 0.18 -2.78 16 26 H 0.25 6.57 7.80 -4.41 -0.03 6.54 16 27 H 0.11 5.54 5.82 -2.39 -0.01 5.53 16 28 H 0.06 3.08 7.52 -2.39 -0.02 3.06 16 29 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 30 H 0.09 3.62 4.70 -2.39 -0.01 3.61 16 31 H 0.07 2.15 5.65 -2.39 -0.01 2.14 16 32 H 0.03 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.05 1.62 8.13 -2.39 -0.02 1.61 16 34 H 0.08 2.32 6.73 -2.39 -0.02 2.31 16 35 H 0.06 2.35 5.14 -2.39 -0.01 2.34 16 36 H 0.06 2.35 7.91 -2.39 -0.02 2.33 16 37 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 38 H 0.13 3.04 8.03 -2.92 -0.02 3.01 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 41 H 0.13 3.31 8.02 -2.91 -0.02 3.29 16 Total: -1.00 -59.97 350.37 7.39 -52.58 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 1.05 Total: 31.23 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 5.76 Total: -19.47 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -1.32 Total: -68.08 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.08 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.68 kcal Total: -59.97 7.39 -52.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281613676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.053 kcal (2) G-P(sol) polarization free energy of solvation -59.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds