Wall clock time and date at job start Tue Mar 31 2020 12:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32427 * 120.26138 * 2 1 4 4 C 1.33043 * 121.91011 * 179.97438 * 3 2 1 5 5 S 1.76445 * 129.52596 * 179.97438 * 4 3 2 6 6 C 1.75720 * 90.72364 * 179.82121 * 5 4 3 7 7 C 1.30889 * 109.69296 * 0.32820 * 6 5 4 8 8 N 1.35374 * 121.33830 * 0.02562 * 4 3 2 9 9 C 1.36340 * 118.86219 * 0.02562 * 8 4 3 10 10 O 1.22094 * 120.20049 * 180.02562 * 9 8 4 11 11 C 1.37870 * 120.26300 * 179.97438 * 2 1 3 12 12 C 1.50706 * 120.59197 * 0.05187 * 11 2 1 13 13 C 1.53007 * 109.46901 * 94.99660 * 12 11 2 14 14 N 1.46496 * 109.46931 * 180.02562 * 13 12 11 15 15 C 1.36942 * 119.99868 * 270.00255 * 14 13 12 16 16 H 1.07994 * 120.00244 * 140.81951 * 15 14 13 17 17 C 1.38811 * 120.00057 * 320.81403 * 15 14 13 18 18 N 1.31621 * 120.00038 * 156.90050 * 17 15 14 19 19 Si 1.86803 * 119.99764 * 336.90789 * 17 15 14 20 20 H 1.48494 * 109.47301 * 92.07684 * 19 17 15 21 21 H 1.48507 * 109.46950 * 212.07595 * 19 17 15 22 22 H 1.48502 * 109.47203 * 332.06935 * 19 17 15 23 23 C 1.46495 * 120.00406 * 89.99847 * 14 13 12 24 24 C 1.52998 * 117.50519 * 183.93629 * 23 14 13 25 25 C 1.53000 * 60.00144 * 252.51303 * 24 23 14 26 26 H 1.08998 * 109.47156 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.47133 * 119.99925 * 1 2 3 28 28 H 1.08996 * 109.46949 * 240.00295 * 1 2 3 29 29 H 1.08003 * 125.15526 * 180.21400 * 6 5 4 30 30 H 1.08010 * 121.69196 * 179.86895 * 7 6 5 31 31 H 1.08998 * 109.46975 * 214.99438 * 12 11 2 32 32 H 1.08995 * 109.46817 * 335.00031 * 12 11 2 33 33 H 1.08998 * 109.47125 * 299.99687 * 13 12 11 34 34 H 1.09000 * 109.46875 * 60.00090 * 13 12 11 35 35 H 0.97000 * 119.99817 * 179.97438 * 18 17 15 36 36 H 1.09005 * 115.54784 * 329.64489 * 23 14 13 37 37 H 1.09006 * 117.49689 * 0.02562 * 24 23 14 38 38 H 1.08999 * 117.50344 * 145.01830 * 24 23 14 39 39 H 1.09005 * 117.49379 * 252.51223 * 25 24 23 40 40 H 1.08990 * 117.52023 * 107.47979 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1744 1.1438 0.0000 4 6 3.5042 1.1821 0.0005 5 16 4.5876 2.5748 0.0000 6 6 5.9881 1.5136 0.0068 7 6 5.5954 0.2650 0.0018 8 7 4.2413 0.0466 0.0005 9 6 3.5980 -1.1555 -0.0005 10 8 4.2387 -2.1949 0.0000 11 6 2.2018 -1.1908 0.0005 12 6 1.4679 -2.5071 -0.0001 13 6 1.3304 -3.0136 -1.4373 14 7 0.6163 -4.2928 -1.4379 15 6 1.3142 -5.4665 -1.3339 16 1 0.9226 -6.2764 -0.7364 17 6 2.5249 -5.6152 -1.9964 18 7 3.4033 -6.4987 -1.5718 19 14 2.9075 -4.5613 -3.4906 20 1 3.6274 -3.3358 -3.0606 21 1 3.7586 -5.3302 -4.4338 22 1 1.6406 -4.1803 -4.1651 23 6 -0.8441 -4.3165 -1.5497 24 6 -1.5383 -5.6764 -1.4519 25 6 -1.4466 -4.9597 -2.8005 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5138 -0.8899 28 1 -0.3633 -0.5138 0.8900 29 1 7.0170 1.8418 0.0122 30 1 6.3018 -0.5521 0.0026 31 1 2.0257 -3.2344 0.5897 32 1 0.4772 -2.3707 0.4335 33 1 0.7725 -2.2863 -2.0271 34 1 2.3211 -3.1499 -1.8708 35 1 4.2491 -6.6028 -2.0351 36 1 -1.3620 -3.4553 -1.1275 37 1 -0.9083 -6.5536 -1.3038 38 1 -2.5130 -5.7102 -0.9650 39 1 -2.3610 -4.5218 -3.2009 40 1 -0.7563 -5.3649 -3.5402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286097071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:55 Heat of formation + Delta-G solvation = 96.801134 kcal Electronic energy + Delta-G solvation = -24872.831833 eV Core-core repulsion = 21396.177679 eV Total energy + Delta-G solvation = -3476.654153 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.32729 -38.13543 -37.56636 -37.10306 -34.18519 -32.69991 -31.71435 -30.98277 -29.27055 -27.50137 -25.45738 -24.12429 -23.10282 -22.28470 -21.47625 -20.92417 -19.57612 -19.04887 -18.52451 -16.82172 -16.72757 -16.25322 -15.48288 -15.31786 -15.29031 -14.80444 -14.09718 -13.80644 -13.68192 -13.45888 -13.33297 -13.13106 -12.77723 -12.46942 -12.29827 -12.12953 -11.85399 -11.77145 -11.64972 -11.27409 -10.83778 -10.66164 -10.36999 -10.27923 -10.11627 -10.04280 -9.94287 -9.59466 -9.42173 -9.38095 -9.18113 -8.42625 -7.58079 -6.64882 -5.97936 -3.38469 0.10965 0.44610 1.21986 1.27311 1.88164 2.21510 3.37934 3.48460 3.54442 3.55290 4.04851 4.22575 4.56686 4.73235 4.78358 4.88115 4.92125 5.03569 5.30256 5.34980 5.39497 5.58545 5.63524 5.78173 5.81410 5.94275 5.98847 6.02366 6.09335 6.26336 6.31500 6.37193 6.42461 6.45421 6.54169 6.90187 6.95878 7.05413 7.15336 7.55983 7.84834 8.09119 8.44044 9.01822 9.73963 10.13062 11.16737 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.004594 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.606590 B = 6093.210223 C = 7179.404455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.179 3.821 3 N -0.505 5.505 4 C 0.286 3.714 5 S 0.184 5.816 6 C -0.241 4.241 7 C 0.072 3.928 8 N -0.463 5.463 9 C 0.520 3.480 10 O -0.491 6.491 11 C -0.238 4.238 12 C -0.068 4.068 13 C 0.147 3.853 14 N -0.569 5.569 15 C -0.273 4.273 16 H 0.083 0.917 17 C 0.049 3.951 18 N -0.889 5.889 19 Si 0.869 3.131 20 H -0.284 1.284 21 H -0.301 1.301 22 H -0.268 1.268 23 C 0.119 3.881 24 C -0.188 4.188 25 C -0.225 4.225 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.199 0.801 30 H 0.191 0.809 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.264 0.736 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 20.018 3.794 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.053 3.947 3 N -0.232 5.232 4 C -0.081 4.081 5 S 0.432 5.568 6 C -0.378 4.378 7 C -0.055 4.055 8 N -0.176 5.176 9 C 0.321 3.679 10 O -0.365 6.365 11 C -0.249 4.249 12 C -0.108 4.108 13 C 0.021 3.979 14 N -0.287 5.287 15 C -0.401 4.401 16 H 0.100 0.900 17 C -0.153 4.153 18 N -0.528 5.528 19 Si 0.699 3.301 20 H -0.212 1.212 21 H -0.229 1.229 22 H -0.192 1.192 23 C 0.011 3.989 24 C -0.226 4.226 25 C -0.265 4.265 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.216 0.784 30 H 0.208 0.792 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.091 21.176 3.771 21.509 hybrid contribution 1.242 -1.617 -0.964 2.255 sum 1.333 19.559 2.807 19.804 Atomic orbital electron populations 1.20749 0.87199 1.03865 1.03919 1.21208 0.97173 0.86248 0.90041 1.67936 1.01094 1.29470 1.24737 1.25944 0.93379 0.90549 0.98253 1.85066 0.91201 1.00512 1.79975 1.25029 1.04620 0.94475 1.13696 1.20902 0.84690 0.99720 1.00203 1.45357 1.06765 1.09702 1.55749 1.17395 0.89439 0.81159 0.79891 1.91094 1.67455 1.29252 1.48739 1.21577 0.90885 0.98922 1.13547 1.20902 0.98304 0.90186 1.01449 1.21220 0.96961 0.86715 0.93019 1.43688 0.99708 1.02150 1.83113 1.18674 1.02568 0.93273 1.25611 0.89980 1.25442 0.96572 0.95953 0.97323 1.69860 1.06921 1.36787 1.39238 0.87057 0.78071 0.79890 0.85054 1.21181 1.22892 1.19226 1.21168 0.84831 0.94514 0.98396 1.23052 1.00557 0.98587 1.00414 1.23373 1.02256 1.07995 0.92926 0.90311 0.89332 0.89397 0.78402 0.79229 0.89524 0.91004 0.94441 0.92160 0.92649 0.89056 0.87913 0.90510 0.90864 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 8.93 36.01 0.32 -0.84 16 2 C 0.18 2.74 6.81 -82.47 -0.56 2.18 16 3 N -0.51 -7.48 10.34 -9.01 -0.09 -7.57 16 4 C 0.29 3.96 8.32 -87.91 -0.73 3.23 16 5 S 0.18 1.65 23.37 -107.50 -2.51 -0.87 16 6 C -0.24 -1.90 11.12 29.04 0.32 -1.58 16 7 C 0.07 0.84 10.46 -16.86 -0.18 0.66 16 8 N -0.46 -7.20 2.82 -66.36 -0.19 -7.39 16 9 C 0.52 10.27 7.50 -15.01 -0.11 10.15 16 10 O -0.49 -11.69 16.68 4.83 0.08 -11.61 16 11 C -0.24 -4.38 5.18 -104.22 -0.54 -4.92 16 12 C -0.07 -1.35 5.11 -27.88 -0.14 -1.49 16 13 C 0.15 3.31 4.54 -4.04 -0.02 3.30 16 14 N -0.57 -13.67 2.38 -165.66 -0.39 -14.06 16 15 C -0.27 -7.71 8.93 -15.06 -0.13 -7.84 16 16 H 0.08 2.48 6.86 -52.49 -0.36 2.12 16 17 C 0.05 1.47 5.28 -17.43 -0.09 1.38 16 18 N -0.89 -28.00 13.97 55.49 0.78 -27.23 16 19 Si 0.87 23.50 25.31 -169.99 -4.30 19.19 16 20 H -0.28 -7.79 6.52 56.52 0.37 -7.42 16 21 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 22 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.12 2.40 6.57 -67.93 -0.45 1.96 16 24 C -0.19 -3.60 9.80 -26.73 -0.26 -3.86 16 25 C -0.22 -4.34 10.35 -26.73 -0.28 -4.61 16 26 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 27 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 28 H 0.09 0.91 7.55 -51.93 -0.39 0.52 16 29 H 0.20 0.77 8.06 -52.48 -0.42 0.35 16 30 H 0.19 2.04 8.00 -52.48 -0.42 1.62 16 31 H 0.09 2.04 7.78 -51.93 -0.40 1.64 16 32 H 0.07 1.22 6.56 -51.93 -0.34 0.88 16 33 H 0.04 0.76 8.04 -51.93 -0.42 0.34 16 34 H 0.06 1.58 3.46 -51.93 -0.18 1.40 16 35 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.10 2.24 6.45 -51.93 -0.33 1.91 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -35.61 344.37 -9.27 -44.87 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.97 Total: 1.76 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.85 Total: -2.29 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.10 Total: -56.25 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.30 Total: 19.19 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.51 Total: -0.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.61 -9.27 -44.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286097071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.676 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds