Wall clock time and date at job start Tue Mar 31 2020 12:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32427 * 120.26138 * 2 1 4 4 C 1.33043 * 121.91011 * 179.97438 * 3 2 1 5 5 S 1.76445 * 129.52596 * 179.97438 * 4 3 2 6 6 C 1.75720 * 90.72364 * 179.82121 * 5 4 3 7 7 C 1.30889 * 109.69296 * 0.32820 * 6 5 4 8 8 N 1.35374 * 121.33830 * 0.02562 * 4 3 2 9 9 C 1.36340 * 118.86219 * 0.02562 * 8 4 3 10 10 O 1.22094 * 120.20049 * 180.02562 * 9 8 4 11 11 C 1.37870 * 120.26300 * 179.97438 * 2 1 3 12 12 C 1.50706 * 120.59197 * 0.05187 * 11 2 1 13 13 C 1.53007 * 109.46901 * 94.99660 * 12 11 2 14 14 N 1.46496 * 109.46931 * 180.02562 * 13 12 11 15 15 C 1.36942 * 119.99868 * 270.00255 * 14 13 12 16 16 H 1.07994 * 120.00244 * 140.81951 * 15 14 13 17 17 C 1.38811 * 120.00057 * 320.81403 * 15 14 13 18 18 N 1.31621 * 120.00038 * 156.90050 * 17 15 14 19 19 Si 1.86803 * 119.99764 * 336.90789 * 17 15 14 20 20 H 1.48494 * 109.47301 * 92.07684 * 19 17 15 21 21 H 1.48507 * 109.46950 * 212.07595 * 19 17 15 22 22 H 1.48502 * 109.47203 * 332.06935 * 19 17 15 23 23 C 1.46495 * 120.00406 * 89.99847 * 14 13 12 24 24 C 1.52998 * 117.50519 * 183.93629 * 23 14 13 25 25 C 1.53000 * 60.00144 * 252.51303 * 24 23 14 26 26 H 1.08998 * 109.47156 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.47133 * 119.99925 * 1 2 3 28 28 H 1.08996 * 109.46949 * 240.00295 * 1 2 3 29 29 H 1.08003 * 125.15526 * 180.21400 * 6 5 4 30 30 H 1.08010 * 121.69196 * 179.86895 * 7 6 5 31 31 H 1.08998 * 109.46975 * 214.99438 * 12 11 2 32 32 H 1.08995 * 109.46817 * 335.00031 * 12 11 2 33 33 H 1.08998 * 109.47125 * 299.99687 * 13 12 11 34 34 H 1.09000 * 109.46875 * 60.00090 * 13 12 11 35 35 H 0.97000 * 119.99817 * 179.97438 * 18 17 15 36 36 H 1.09005 * 115.54784 * 329.64489 * 23 14 13 37 37 H 1.09006 * 117.49689 * 0.02562 * 24 23 14 38 38 H 1.08999 * 117.50344 * 145.01830 * 24 23 14 39 39 H 1.09005 * 117.49379 * 252.51223 * 25 24 23 40 40 H 1.08990 * 117.52023 * 107.47979 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1744 1.1438 0.0000 4 6 3.5042 1.1821 0.0005 5 16 4.5876 2.5748 0.0000 6 6 5.9881 1.5136 0.0068 7 6 5.5954 0.2650 0.0018 8 7 4.2413 0.0466 0.0005 9 6 3.5980 -1.1555 -0.0005 10 8 4.2387 -2.1949 0.0000 11 6 2.2018 -1.1908 0.0005 12 6 1.4679 -2.5071 -0.0001 13 6 1.3304 -3.0136 -1.4373 14 7 0.6163 -4.2928 -1.4379 15 6 1.3142 -5.4665 -1.3339 16 1 0.9226 -6.2764 -0.7364 17 6 2.5249 -5.6152 -1.9964 18 7 3.4033 -6.4987 -1.5718 19 14 2.9075 -4.5613 -3.4906 20 1 3.6274 -3.3358 -3.0606 21 1 3.7586 -5.3302 -4.4338 22 1 1.6406 -4.1803 -4.1651 23 6 -0.8441 -4.3165 -1.5497 24 6 -1.5383 -5.6764 -1.4519 25 6 -1.4466 -4.9597 -2.8005 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5138 -0.8899 28 1 -0.3633 -0.5138 0.8900 29 1 7.0170 1.8418 0.0122 30 1 6.3018 -0.5521 0.0026 31 1 2.0257 -3.2344 0.5897 32 1 0.4772 -2.3707 0.4335 33 1 0.7725 -2.2863 -2.0271 34 1 2.3211 -3.1499 -1.8708 35 1 4.2491 -6.6028 -2.0351 36 1 -1.3620 -3.4553 -1.1275 37 1 -0.9083 -6.5536 -1.3038 38 1 -2.5130 -5.7102 -0.9650 39 1 -2.3610 -4.5218 -3.2009 40 1 -0.7563 -5.3649 -3.5402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286097071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:54 Heat of formation + Delta-G solvation = 72.892776 kcal Electronic energy + Delta-G solvation = -24873.868577 eV Core-core repulsion = 21396.177679 eV Total energy + Delta-G solvation = -3477.690898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.50550 -39.47967 -38.92321 -38.61165 -35.75602 -34.39071 -33.10879 -32.53145 -30.54093 -28.86072 -26.89387 -25.87155 -24.41873 -23.60258 -22.95349 -22.18188 -21.40714 -20.16240 -19.63545 -18.50055 -17.93682 -17.78955 -17.30790 -17.05545 -16.60146 -15.74754 -15.51602 -15.17607 -14.99272 -14.88880 -14.80215 -14.53317 -14.26231 -14.06894 -13.99360 -13.53915 -13.18345 -12.85340 -12.81956 -12.72400 -12.63377 -12.57795 -12.11644 -11.86517 -11.58995 -11.44818 -11.32715 -11.29998 -11.14088 -10.92516 -10.64262 -10.26752 -8.79939 -8.52127 -8.27178 -5.61989 -1.00058 -0.52868 0.21552 0.35444 0.75518 1.11776 1.20276 1.22820 1.35456 2.28817 2.35065 2.92945 2.99372 3.11846 3.22607 3.38014 3.76787 3.98084 4.09309 4.19429 4.26915 4.33124 4.39126 4.42244 4.48617 4.61969 4.67412 4.71867 4.75878 4.84323 4.98324 5.02288 5.05247 5.12195 5.23834 5.35200 5.36112 5.45586 5.58497 5.91323 6.17625 6.39430 6.54367 6.97935 7.61923 8.02043 8.92201 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.004594 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.606590 B = 6093.210223 C = 7179.404455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.221 3.779 3 N -0.520 5.520 4 C 0.265 3.735 5 S 0.285 5.715 6 C -0.191 4.191 7 C 0.014 3.986 8 N -0.463 5.463 9 C 0.504 3.496 10 O -0.566 6.566 11 C -0.298 4.298 12 C -0.043 4.043 13 C 0.146 3.854 14 N -0.585 5.585 15 C -0.246 4.246 16 H 0.050 0.950 17 C -0.010 4.010 18 N -0.942 5.942 19 Si 0.930 3.070 20 H -0.298 1.298 21 H -0.307 1.307 22 H -0.251 1.251 23 C 0.104 3.896 24 C -0.186 4.186 25 C -0.214 4.214 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.251 0.749 30 H 0.186 0.814 31 H 0.030 0.970 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.137 0.863 37 H 0.063 0.937 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 25.711 3.565 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 N -0.248 5.248 4 C -0.100 4.100 5 S 0.535 5.465 6 C -0.327 4.327 7 C -0.111 4.111 8 N -0.173 5.173 9 C 0.309 3.691 10 O -0.447 6.447 11 C -0.310 4.310 12 C -0.084 4.084 13 C 0.021 3.979 14 N -0.304 5.304 15 C -0.376 4.376 16 H 0.068 0.932 17 C -0.207 4.207 18 N -0.586 5.586 19 Si 0.761 3.239 20 H -0.227 1.227 21 H -0.235 1.235 22 H -0.175 1.175 23 C -0.002 4.002 24 C -0.224 4.224 25 C -0.255 4.255 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.267 0.733 30 H 0.203 0.797 31 H 0.049 0.951 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.155 0.845 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.651 26.987 3.533 27.267 hybrid contribution 1.871 -2.921 -0.761 3.551 sum 0.220 24.066 2.771 24.226 Atomic orbital electron populations 1.20973 0.84189 1.05796 1.05039 1.21753 0.98953 0.85164 0.85054 1.68136 1.01456 1.28692 1.26533 1.27194 0.94115 0.92116 0.96529 1.84973 0.88643 0.96749 1.76109 1.25794 1.06927 0.92695 1.07258 1.21156 0.83314 1.01595 1.05083 1.45296 1.08443 1.09249 1.54332 1.17668 0.90218 0.81472 0.79782 1.91036 1.68761 1.31675 1.53187 1.21272 0.90585 0.99159 1.19943 1.20449 0.99156 0.90029 0.98760 1.21158 0.95024 0.86599 0.95095 1.43795 1.01559 1.01176 1.83876 1.18547 1.02119 0.93899 1.23021 0.93229 1.25990 0.97111 0.97613 1.00011 1.69983 1.07627 1.39968 1.41017 0.86065 0.78017 0.77699 0.82132 1.22680 1.23502 1.17514 1.21607 0.82447 0.96616 0.99576 1.23037 1.01602 0.96701 1.01050 1.23355 1.02970 1.07263 0.91897 0.88034 0.88330 0.87721 0.73321 0.79716 0.95125 0.87945 0.91397 0.96338 0.93240 0.84517 0.91800 0.86479 0.86636 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 8.93 71.24 0.64 -1.36 16 2 C 0.22 6.37 6.81 42.38 0.29 6.66 16 3 N -0.52 -14.05 10.34 -182.43 -1.89 -15.94 16 4 C 0.26 6.72 8.32 179.40 1.49 8.22 16 5 S 0.29 3.66 23.37 -56.49 -1.32 2.34 16 6 C -0.19 -2.16 11.12 67.89 0.75 -1.40 16 7 C 0.01 0.31 10.46 83.93 0.88 1.19 16 8 N -0.46 -14.47 2.82 -481.03 -1.36 -15.83 16 9 C 0.50 21.22 7.50 84.34 0.63 21.86 16 10 O -0.57 -29.93 16.68 -5.62 -0.09 -30.03 16 11 C -0.30 -11.29 5.18 -19.60 -0.10 -11.39 16 12 C -0.04 -1.80 5.11 29.85 0.15 -1.65 16 13 C 0.15 6.75 4.54 86.38 0.39 7.14 16 14 N -0.58 -28.64 2.38 -678.04 -1.61 -30.25 16 15 C -0.25 -14.74 8.93 84.03 0.75 -13.98 16 16 H 0.05 3.24 6.86 -2.91 -0.02 3.22 16 17 C -0.01 -0.66 5.28 84.86 0.45 -0.21 16 18 N -0.94 -64.17 13.97 21.65 0.30 -63.87 16 19 Si 0.93 52.11 25.31 68.60 1.74 53.84 16 20 H -0.30 -17.24 6.52 99.48 0.65 -16.59 16 21 H -0.31 -17.09 7.11 99.48 0.71 -16.38 16 22 H -0.25 -13.13 7.11 99.48 0.71 -12.42 16 23 C 0.10 3.99 6.57 44.99 0.30 4.29 16 24 C -0.19 -6.89 9.80 30.59 0.30 -6.59 16 25 C -0.21 -7.80 10.35 30.59 0.32 -7.49 16 26 H 0.10 1.54 8.12 -2.39 -0.02 1.52 16 27 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 28 H 0.10 1.75 7.55 -2.39 -0.02 1.74 16 29 H 0.25 0.25 8.06 -2.91 -0.02 0.23 16 30 H 0.19 4.25 8.00 -2.91 -0.02 4.22 16 31 H 0.03 1.57 7.78 -2.39 -0.02 1.55 16 32 H 0.10 3.41 6.56 -2.39 -0.02 3.40 16 33 H 0.07 2.66 8.04 -2.39 -0.02 2.64 16 34 H 0.02 1.02 3.46 -2.39 -0.01 1.01 16 35 H 0.26 16.93 8.31 -92.71 -0.77 16.16 16 36 H 0.14 4.01 8.14 -2.38 -0.02 3.99 16 37 H 0.06 2.89 6.45 -2.38 -0.02 2.87 16 38 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.12 3.25 8.14 -2.38 -0.02 3.23 16 40 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -90.60 344.37 4.02 -86.59 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.01 Total: 7.87 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 7.24 Total: 5.27 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -4.55 Total: -125.88 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.09 Total: -30.03 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 1.74 Total: 53.84 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.32 Total: 2.34 kcal Total: -90.60 4.02 -86.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286097071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.478 kcal (2) G-P(sol) polarization free energy of solvation -90.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds