Wall clock time and date at job start Tue Mar 31 2020 12:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38315 * 120.44729 * 2 1 4 4 C 1.38866 * 118.50942 * 180.27388 * 3 2 1 5 5 C 1.38071 * 119.34154 * 0.02562 * 4 3 2 6 6 N 1.31936 * 120.85880 * 359.97438 * 5 4 3 7 7 C 1.32488 * 121.61368 * 0.02562 * 6 5 4 8 8 S 1.76198 * 119.71057 * 179.97438 * 7 6 5 9 9 C 1.81397 * 103.00208 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.47395 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00043 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99959 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99984 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46656 * 89.99967 * 13 12 10 15 15 H 1.07997 * 120.00267 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99458 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00207 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99468 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47407 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46767 * 120.00137 * 18 16 14 21 21 H 1.48499 * 109.46885 * 239.99600 * 18 16 14 22 22 C 1.46503 * 119.99980 * 359.97438 * 12 10 9 23 23 C 1.52993 * 109.47282 * 90.00493 * 22 12 10 24 24 C 1.47197 * 109.47186 * 180.02562 * 23 22 12 25 25 N 8.47775 * 134.32705 * 166.61884 * 2 1 3 26 26 H 1.08999 * 109.47298 * 269.71935 * 1 2 3 27 27 H 1.09001 * 109.47669 * 29.72540 * 1 2 3 28 28 H 1.09008 * 109.47050 * 149.71844 * 1 2 3 29 29 H 1.08004 * 120.74450 * 0.27971 * 3 2 1 30 30 H 1.08005 * 120.32955 * 179.97438 * 4 3 2 31 31 H 1.07993 * 119.57407 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.46919 * 300.00352 * 9 8 7 33 33 H 1.09006 * 109.47089 * 59.99746 * 9 8 7 34 34 H 1.08994 * 109.47074 * 209.99530 * 13 12 10 35 35 H 1.09001 * 109.47247 * 330.00158 * 13 12 10 36 36 H 0.97003 * 119.99598 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.46816 * 210.00518 * 22 12 10 38 38 H 1.08994 * 109.47125 * 329.99739 * 22 12 10 39 39 H 1.09006 * 109.46541 * 299.99535 * 23 22 12 40 40 H 1.08994 * 109.47656 * 59.99572 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.1924 0.0000 4 6 3.5958 1.1455 -0.0058 5 6 4.2312 -0.0803 -0.0120 6 7 3.5372 -1.2024 -0.0118 7 6 2.2123 -1.1995 -0.0064 8 16 1.3358 -2.7280 -0.0071 9 6 2.6659 -3.9613 -0.0154 10 6 2.0683 -5.3447 -0.0174 11 8 0.8637 -5.4849 -0.0133 12 7 2.8726 -6.4262 -0.0229 13 6 2.2916 -7.7711 -0.0244 14 6 2.0877 -8.2286 -1.4458 15 1 2.3628 -7.5820 -2.2659 16 6 1.5488 -9.4722 -1.6990 17 7 1.2133 -10.2592 -0.7003 18 14 1.2953 -10.0389 -3.4609 19 1 1.7508 -8.9765 -4.3931 20 1 2.0800 -11.2768 -3.7004 21 1 -0.1459 -10.3144 -3.6897 22 6 4.3278 -6.2568 -0.0274 23 6 4.8393 -6.2016 1.4135 24 6 6.3013 -6.0309 1.4089 25 7 7.4309 -5.9000 1.4035 26 1 -0.3634 -0.0050 1.0276 27 1 -0.3634 0.8924 -0.5095 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6875 2.1388 0.0045 30 1 4.1724 2.0587 -0.0064 31 1 5.3104 -0.1212 -0.0161 32 1 3.2784 -3.8291 -0.9073 33 1 3.2851 -3.8339 0.8727 34 1 2.9663 -8.4588 0.4854 35 1 1.3323 -7.7531 0.4927 36 1 0.8345 -11.1343 -0.8786 37 1 4.7898 -7.0975 -0.5450 38 1 4.5841 -5.3296 -0.5398 39 1 4.3772 -5.3609 1.9310 40 1 4.5830 -7.1289 1.9258 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286583139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:07 Heat of formation + Delta-G solvation = 21.630672 kcal Electronic energy + Delta-G solvation = -23278.792599 eV Core-core repulsion = 19798.878810 eV Total energy + Delta-G solvation = -3479.913789 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.18887 -39.29441 -36.85236 -35.30515 -33.87268 -32.95914 -32.12046 -30.89086 -30.06091 -27.53130 -26.83615 -24.06526 -24.00005 -22.91592 -22.28761 -18.93956 -17.98775 -17.55223 -16.74064 -16.69580 -16.46390 -15.91693 -15.40050 -15.15371 -14.75964 -14.68280 -14.56933 -14.10146 -13.79712 -13.37986 -13.31198 -13.03564 -12.94431 -12.69771 -12.55568 -12.44494 -12.31008 -12.03776 -11.96434 -11.71347 -11.30746 -10.99672 -10.88386 -10.67348 -10.28690 -10.22582 -10.21599 -9.72895 -9.70309 -9.54592 -9.22276 -8.49679 -7.94435 -7.51679 -6.11246 -4.15917 0.81745 1.04115 1.37729 2.26337 2.72034 2.81584 3.14642 3.27544 3.35899 3.39531 3.49833 3.61979 4.15026 4.33292 4.40285 4.55632 4.74994 4.78821 4.87282 5.01426 5.05312 5.06461 5.19557 5.24744 5.26033 5.42424 5.43520 5.45466 5.50901 5.80295 5.83481 5.88452 6.01600 6.05343 6.40621 6.83958 7.28959 7.36232 7.58050 7.59815 7.84529 8.11842 8.14315 8.71537 8.90637 9.49816 10.96960 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.003594 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.288199 B = 7788.520743 C = 9388.790959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C -0.063 4.063 4 C -0.183 4.183 5 C 0.107 3.893 6 N -0.490 5.490 7 C 0.102 3.898 8 S 0.016 5.984 9 C -0.143 4.143 10 C 0.524 3.476 11 O -0.518 6.518 12 N -0.589 5.589 13 C 0.245 3.755 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.282 1.282 22 C 0.115 3.885 23 C -0.050 4.050 24 C 0.217 3.783 25 N -0.445 5.445 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.156 0.844 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.264 0.736 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 20.852 3.709 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.127 4.127 3 C -0.090 4.090 4 C -0.207 4.207 5 C -0.053 4.053 6 N -0.203 5.203 7 C -0.146 4.146 8 S 0.258 5.742 9 C -0.294 4.294 10 C 0.308 3.692 11 O -0.394 6.394 12 N -0.321 5.321 13 C 0.127 3.873 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.011 4.011 23 C -0.092 4.092 24 C -0.101 4.101 25 N -0.122 5.122 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.173 0.827 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.643 19.582 3.741 20.267 hybrid contribution 0.704 0.662 -0.963 1.365 sum 4.348 20.245 2.777 20.892 Atomic orbital electron populations 1.20776 0.89731 1.03504 1.03176 1.20446 0.97551 0.92112 1.02575 1.21390 0.94132 0.97642 0.95855 1.22026 0.95195 0.99450 1.04023 1.22696 1.00182 0.87746 0.94672 1.68147 1.06150 1.31340 1.14621 1.23596 0.93190 0.98577 0.99264 1.86245 1.07636 0.90497 1.89842 1.23851 1.01906 0.95683 1.07983 1.19465 0.87186 0.84639 0.77913 1.90734 1.13876 1.85761 1.49019 1.48126 1.04379 1.08296 1.71304 1.19419 0.95123 0.74924 0.97875 1.21447 1.42272 1.00926 0.92216 0.92238 1.24912 0.95091 0.96487 0.97440 1.69926 1.42690 1.09827 1.30710 0.86456 0.78001 0.78488 0.84572 1.19762 1.20976 1.20832 1.21360 0.82432 1.04038 0.93278 1.19878 0.81727 1.06092 1.01455 1.29102 0.95050 0.92787 0.93124 1.81249 1.12857 1.09479 1.08603 0.90338 0.91008 0.90270 0.84616 0.84871 0.82721 0.86674 0.86861 0.94440 0.93356 0.92679 0.88476 0.90470 0.87626 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.59 36.01 0.35 -0.66 16 2 C -0.12 -1.26 5.92 -104.25 -0.62 -1.88 16 3 C -0.06 -0.54 9.85 -39.32 -0.39 -0.93 16 4 C -0.18 -1.51 10.10 -39.41 -0.40 -1.91 16 5 C 0.11 1.06 11.17 -17.57 -0.20 0.87 16 6 N -0.49 -6.18 9.43 -12.11 -0.11 -6.29 16 7 C 0.10 1.31 7.00 -16.93 -0.12 1.20 16 8 S 0.02 0.23 19.28 -107.50 -2.07 -1.84 16 9 C -0.14 -2.04 4.24 36.00 0.15 -1.89 16 10 C 0.52 9.72 7.69 -10.99 -0.08 9.64 16 11 O -0.52 -11.90 15.44 5.56 0.09 -11.81 16 12 N -0.59 -10.73 2.46 -175.06 -0.43 -11.16 16 13 C 0.25 5.73 5.16 -5.19 -0.03 5.70 16 14 C -0.53 -14.04 9.39 -34.44 -0.32 -14.36 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 18 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 23 C -0.05 -0.54 6.03 -29.52 -0.18 -0.71 16 24 C 0.22 2.69 15.44 -20.72 -0.32 2.37 16 25 N -0.44 -6.66 18.54 42.20 0.78 -5.88 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.08 0.80 6.81 -51.92 -0.35 0.44 16 29 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 30 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.55 7.40 -51.92 -0.38 1.17 16 33 H 0.11 1.37 7.18 -51.92 -0.37 1.00 16 34 H 0.04 0.86 8.07 -51.93 -0.42 0.45 16 35 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.08 0.90 6.44 -51.93 -0.33 0.56 16 39 H 0.11 0.95 7.22 -51.93 -0.37 0.58 16 40 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -33.41 364.79 -7.93 -41.33 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.12 Total: -2.03 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.27 Total: 0.59 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.97 Total: -47.89 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.07 Total: -1.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.41 -7.93 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286583139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.965 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds