Wall clock time and date at job start Tue Mar 31 2020 12:14:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.33394 * 125.20000 * 2 1
4 4 C 1.38420 * 114.91627 * 180.02562 * 3 2 1
5 5 C 1.33382 * 114.92515 * 0.02562 * 4 3 2
6 6 C 1.50706 * 125.20677 * 179.97438 * 5 4 3
7 7 C 1.53000 * 109.46735 * 90.00103 * 6 5 4
8 8 C 1.50703 * 109.46912 * 180.02562 * 7 6 5
9 9 O 1.21286 * 120.00016 * 0.02562 * 8 7 6
10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6
11 11 C 1.40153 * 120.00168 * 179.97438 * 10 8 7
12 12 C 1.40405 * 125.97385 * 359.71528 * 11 10 8
13 13 C 1.35242 * 107.86630 * 179.82443 * 12 11 10
14 14 N 1.34960 * 107.86285 * 0.43230 * 13 12 11
15 15 C 1.46496 * 125.97879 * 179.68915 * 14 13 12
16 16 C 1.50707 * 109.47203 * 125.01351 * 15 14 13
17 17 H 1.08001 * 119.99844 * 0.02562 * 16 15 14
18 18 C 1.37875 * 119.99871 * 180.02562 * 16 15 14
19 19 N 1.31512 * 120.00292 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00027 * 180.02562 * 18 16 15
21 21 H 1.48507 * 109.47075 * 59.99806 * 20 18 16
22 22 H 1.48497 * 109.47418 * 179.97438 * 20 18 16
23 23 H 1.48496 * 109.47258 * 300.00040 * 20 18 16
24 24 N 1.31222 * 125.97183 * 180.02562 * 11 10 8
25 25 S 1.75875 * 125.20397 * 180.32557 * 2 1 3
26 26 H 1.08997 * 109.47045 * 89.99497 * 1 2 3
27 27 H 1.09001 * 109.47025 * 209.99928 * 1 2 3
28 28 H 1.09003 * 109.46954 * 329.99482 * 1 2 3
29 29 H 1.07998 * 122.53885 * 0.02562 * 3 2 1
30 30 H 1.08005 * 122.53532 * 180.02562 * 4 3 2
31 31 H 1.09001 * 109.46797 * 330.00451 * 6 5 4
32 32 H 1.08992 * 109.47518 * 210.00448 * 6 5 4
33 33 H 1.09002 * 109.47398 * 300.00410 * 7 6 5
34 34 H 1.09001 * 109.47194 * 60.00591 * 7 6 5
35 35 H 0.97005 * 119.99463 * 359.97438 * 10 8 7
36 36 H 1.08001 * 126.06299 * 359.97438 * 12 11 10
37 37 H 1.08007 * 126.06442 * 180.15598 * 13 12 11
38 38 H 1.08997 * 109.47291 * 245.01757 * 15 14 13
39 39 H 1.09004 * 109.46891 * 5.01763 * 15 14 13
40 40 H 0.97004 * 120.00504 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2759 1.0900 0.0000
4 6 3.6379 0.8429 -0.0006
5 6 3.9751 -0.4476 -0.0016
6 6 5.3861 -0.9770 -0.0029
7 6 5.8645 -1.1570 1.4392
8 6 7.2757 -1.6858 1.4379
9 8 7.8431 -1.8973 0.3870
10 7 7.9073 -1.9236 2.6045
11 6 9.2196 -2.4158 2.6034
12 6 9.9892 -2.7098 1.4664
13 6 11.1951 -3.1560 1.8856
14 7 11.1902 -3.1558 3.2352
15 6 12.2969 -3.5727 4.0999
16 6 12.6351 -2.4578 5.0558
17 1 12.0808 -1.5314 5.0228
18 6 13.6521 -2.6204 5.9724
19 7 14.3267 -3.7485 6.0130
20 14 14.0709 -1.2387 7.1577
21 1 12.8829 -0.9249 7.9918
22 1 15.1927 -1.6613 8.0341
23 1 14.4694 -0.0317 6.3901
24 7 9.9417 -2.6880 3.6647
25 16 2.5209 -1.4371 -0.0082
26 1 -0.3633 0.0001 -1.0276
27 1 -0.3633 -0.8900 0.5138
28 1 -0.3633 0.8900 0.5139
29 1 1.8668 2.0895 0.0004
30 1 4.3720 1.6351 -0.0002
31 1 6.0385 -0.2710 -0.5167
32 1 5.4133 -1.9375 -0.5173
33 1 5.8372 -0.1964 1.9537
34 1 5.2121 -1.8630 1.9530
35 1 7.4536 -1.7540 3.4450
36 1 9.6748 -2.5969 0.4393
37 1 12.0147 -3.4627 1.2526
38 1 12.0037 -4.4583 4.6636
39 1 13.1689 -3.8037 3.4880
40 1 15.0420 -3.8631 6.6581
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000290487646.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:08
Heat of formation + Delta-G solvation = 64.762862 kcal
Electronic energy + Delta-G solvation = -22357.219080 eV
Core-core repulsion = 18879.175643 eV
Total energy + Delta-G solvation = -3478.043437 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.110 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.70235 -39.40668 -38.32563 -34.86603 -34.32036 -33.35358 -31.53368 -30.80810
-29.32973 -27.60764 -26.46640 -24.32676 -23.15328 -22.63503 -21.31898 -20.14128
-19.53833 -19.08400 -17.37132 -16.86140 -16.61151 -16.42433 -15.74749 -15.40781
-15.30886 -14.50806 -14.35417 -14.19981 -13.99008 -13.56355 -13.51569 -13.06512
-12.88341 -12.64289 -12.50573 -12.32293 -12.21338 -11.93146 -11.86951 -11.76063
-11.28972 -11.06597 -10.92745 -10.86800 -10.45353 -10.26268 -10.02163 -9.61268
-9.51466 -8.75532 -8.72714 -8.63744 -8.14144 -7.48077 -6.24988 -4.30248
0.67367 1.30233 1.70723 2.31158 2.42463 2.80251 2.92673 3.24979
3.28308 3.32763 3.71346 3.86093 4.30809 4.41895 4.52282 4.66252
4.79752 4.87160 4.95799 5.10055 5.10614 5.16741 5.29341 5.32973
5.52770 5.55286 5.56852 5.78970 5.82183 5.91678 6.00139 6.24771
6.26819 6.48211 6.60079 6.85160 7.04347 7.40471 7.55850 7.70009
7.88018 8.03616 8.23907 8.62554 8.78971 9.35330 10.83659
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.028412 B = 0.001950 C = 0.001881
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 985.274782 B =14354.693915 C =14881.223115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 C -0.185 4.185
3 C -0.139 4.139
4 C -0.135 4.135
5 C -0.173 4.173
6 C -0.033 4.033
7 C -0.131 4.131
8 C 0.519 3.481
9 O -0.519 6.519
10 N -0.631 5.631
11 C 0.255 3.745
12 C -0.288 4.288
13 C 0.051 3.949
14 N -0.319 5.319
15 C 0.258 3.742
16 C -0.529 4.529
17 H 0.068 0.932
18 C 0.062 3.938
19 N -0.895 5.895
20 Si 0.908 3.092
21 H -0.274 1.274
22 H -0.285 1.285
23 H -0.275 1.275
24 N -0.305 5.305
25 S 0.097 5.903
26 H 0.073 0.927
27 H 0.068 0.932
28 H 0.075 0.925
29 H 0.137 0.863
30 H 0.140 0.860
31 H 0.093 0.907
32 H 0.084 0.916
33 H 0.100 0.900
34 H 0.098 0.902
35 H 0.411 0.589
36 H 0.160 0.840
37 H 0.168 0.832
38 H 0.045 0.955
39 H 0.057 0.943
40 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.917 6.675 -12.228 28.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.302 4.302
3 C -0.169 4.169
4 C -0.165 4.165
5 C -0.290 4.290
6 C -0.073 4.073
7 C -0.171 4.171
8 C 0.305 3.695
9 O -0.393 6.393
10 N -0.279 5.279
11 C 0.002 3.998
12 C -0.319 4.319
13 C -0.099 4.099
14 N -0.100 5.100
15 C 0.141 3.859
16 C -0.568 4.568
17 H 0.086 0.914
18 C -0.141 4.141
19 N -0.533 5.533
20 Si 0.736 3.264
21 H -0.199 1.199
22 H -0.210 1.210
23 H -0.200 1.200
24 N -0.136 5.136
25 S 0.361 5.639
26 H 0.092 0.908
27 H 0.087 0.913
28 H 0.094 0.906
29 H 0.155 0.845
30 H 0.158 0.842
31 H 0.112 0.888
32 H 0.103 0.897
33 H 0.119 0.881
34 H 0.116 0.884
35 H 0.246 0.754
36 H 0.177 0.823
37 H 0.185 0.815
38 H 0.063 0.937
39 H 0.075 0.925
40 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -24.516 4.814 -11.551 27.525
hybrid contribution 0.441 2.296 0.380 2.369
sum -24.075 7.110 -11.171 27.476
Atomic orbital electron populations
1.20331 0.87943 1.03130 1.02693 1.24498 0.99940 0.95855 1.09911
1.20071 0.92948 0.99181 1.04710 1.20121 0.96254 0.96004 1.04116
1.24460 0.98495 0.96415 1.09643 1.19871 0.88841 1.02954 0.95614
1.21651 0.92729 1.03605 0.99164 1.20607 0.88152 0.77743 0.83017
1.90649 1.67022 1.50559 1.31060 1.42526 1.11595 1.63981 1.09785
1.19139 0.86215 1.01125 0.93286 1.21521 0.94147 1.16478 0.99755
1.22571 0.99311 1.02145 0.85879 1.49084 1.10441 1.45891 1.04621
1.19748 0.80057 0.96820 0.89305 1.21214 1.17594 1.00750 1.17226
0.91371 1.24943 0.95541 0.96334 0.97245 1.69906 1.22262 1.24607
1.36548 0.86379 0.77994 0.81638 0.80435 1.19942 1.21032 1.20044
1.77336 0.93155 1.23030 1.20070 1.84340 0.96613 1.09422 1.73525
0.90813 0.91335 0.90580 0.84510 0.84218 0.88836 0.89705 0.88123
0.88381 0.75362 0.82291 0.81487 0.93705 0.92519 0.92261
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.43 10.38 36.01 0.37 -0.05 16
2 C -0.18 -1.42 6.51 -36.00 -0.23 -1.65 16
3 C -0.14 -1.07 10.05 -41.21 -0.41 -1.48 16
4 C -0.13 -1.11 10.05 -41.21 -0.41 -1.52 16
5 C -0.17 -1.50 5.76 -36.00 -0.21 -1.71 16
6 C -0.03 -0.30 5.00 -27.88 -0.14 -0.44 16
7 C -0.13 -1.15 5.68 -27.88 -0.16 -1.31 16
8 C 0.52 6.95 7.80 -10.98 -0.09 6.86 16
9 O -0.52 -8.57 13.11 5.55 0.07 -8.50 16
10 N -0.63 -9.45 5.45 -11.13 -0.06 -9.51 16
11 C 0.26 5.09 8.11 -154.39 -1.25 3.83 16
12 C -0.29 -5.68 9.61 -39.83 -0.38 -6.07 16
13 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16
14 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16
15 C 0.26 6.57 6.26 -5.19 -0.03 6.53 16
16 C -0.53 -14.73 9.24 -34.44 -0.32 -15.05 16
17 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16
18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16
19 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16
20 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16
21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16
22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
24 N -0.30 -7.01 12.42 31.44 0.39 -6.62 16
25 S 0.10 0.81 23.31 -107.50 -2.51 -1.70 16
26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16
27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16
29 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16
30 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16
31 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16
32 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16
33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.41 4.95 8.82 -40.82 -0.36 4.59 16
36 H 0.16 3.03 5.92 -52.49 -0.31 2.72 16
37 H 0.17 2.73 8.06 -52.48 -0.42 2.30 16
38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16
39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16
40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16
LS Contribution 361.59 15.07 5.45 5.45
Total: -1.00 -32.66 361.59 -10.01 -42.67
By element:
Atomic # 1 Polarization: 8.99 SS G_CDS: -5.28 Total: 3.71 kcal
Atomic # 6 Polarization: -6.06 SS G_CDS: -3.56 Total: -9.62 kcal
Atomic # 7 Polarization: -49.16 SS G_CDS: 0.84 Total: -48.32 kcal
Atomic # 8 Polarization: -8.57 SS G_CDS: 0.07 Total: -8.50 kcal
Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal
Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -32.66 -10.01 -42.67 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000290487646.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.431 kcal
(2) G-P(sol) polarization free energy of solvation -32.660 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.771 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds