Wall clock time and date at job start Tue Mar 31 2020 12:14:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.33394 * 125.20000 * 2 1
4 4 C 1.38420 * 114.91627 * 180.02562 * 3 2 1
5 5 C 1.33382 * 114.92515 * 0.02562 * 4 3 2
6 6 C 1.50706 * 125.20677 * 179.97438 * 5 4 3
7 7 C 1.53000 * 109.46735 * 90.00103 * 6 5 4
8 8 C 1.50703 * 109.46912 * 180.02562 * 7 6 5
9 9 O 1.21286 * 120.00016 * 0.02562 * 8 7 6
10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6
11 11 C 1.40153 * 120.00168 * 179.97438 * 10 8 7
12 12 C 1.40405 * 125.97385 * 359.71528 * 11 10 8
13 13 C 1.35242 * 107.86630 * 179.82443 * 12 11 10
14 14 N 1.34960 * 107.86285 * 0.43230 * 13 12 11
15 15 C 1.46496 * 125.97879 * 179.68915 * 14 13 12
16 16 C 1.50707 * 109.47203 * 125.01351 * 15 14 13
17 17 H 1.08001 * 119.99844 * 0.02562 * 16 15 14
18 18 C 1.37875 * 119.99871 * 180.02562 * 16 15 14
19 19 N 1.31512 * 120.00292 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00027 * 180.02562 * 18 16 15
21 21 H 1.48507 * 109.47075 * 59.99806 * 20 18 16
22 22 H 1.48497 * 109.47418 * 179.97438 * 20 18 16
23 23 H 1.48496 * 109.47258 * 300.00040 * 20 18 16
24 24 N 1.31222 * 125.97183 * 180.02562 * 11 10 8
25 25 S 1.75875 * 125.20397 * 180.32557 * 2 1 3
26 26 H 1.08997 * 109.47045 * 89.99497 * 1 2 3
27 27 H 1.09001 * 109.47025 * 209.99928 * 1 2 3
28 28 H 1.09003 * 109.46954 * 329.99482 * 1 2 3
29 29 H 1.07998 * 122.53885 * 0.02562 * 3 2 1
30 30 H 1.08005 * 122.53532 * 180.02562 * 4 3 2
31 31 H 1.09001 * 109.46797 * 330.00451 * 6 5 4
32 32 H 1.08992 * 109.47518 * 210.00448 * 6 5 4
33 33 H 1.09002 * 109.47398 * 300.00410 * 7 6 5
34 34 H 1.09001 * 109.47194 * 60.00591 * 7 6 5
35 35 H 0.97005 * 119.99463 * 359.97438 * 10 8 7
36 36 H 1.08001 * 126.06299 * 359.97438 * 12 11 10
37 37 H 1.08007 * 126.06442 * 180.15598 * 13 12 11
38 38 H 1.08997 * 109.47291 * 245.01757 * 15 14 13
39 39 H 1.09004 * 109.46891 * 5.01763 * 15 14 13
40 40 H 0.97004 * 120.00504 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2759 1.0900 0.0000
4 6 3.6379 0.8429 -0.0006
5 6 3.9751 -0.4476 -0.0016
6 6 5.3861 -0.9770 -0.0029
7 6 5.8645 -1.1570 1.4392
8 6 7.2757 -1.6858 1.4379
9 8 7.8431 -1.8973 0.3870
10 7 7.9073 -1.9236 2.6045
11 6 9.2196 -2.4158 2.6034
12 6 9.9892 -2.7098 1.4664
13 6 11.1951 -3.1560 1.8856
14 7 11.1902 -3.1558 3.2352
15 6 12.2969 -3.5727 4.0999
16 6 12.6351 -2.4578 5.0558
17 1 12.0808 -1.5314 5.0228
18 6 13.6521 -2.6204 5.9724
19 7 14.3267 -3.7485 6.0130
20 14 14.0709 -1.2387 7.1577
21 1 12.8829 -0.9249 7.9918
22 1 15.1927 -1.6613 8.0341
23 1 14.4694 -0.0317 6.3901
24 7 9.9417 -2.6880 3.6647
25 16 2.5209 -1.4371 -0.0082
26 1 -0.3633 0.0001 -1.0276
27 1 -0.3633 -0.8900 0.5138
28 1 -0.3633 0.8900 0.5139
29 1 1.8668 2.0895 0.0004
30 1 4.3720 1.6351 -0.0002
31 1 6.0385 -0.2710 -0.5167
32 1 5.4133 -1.9375 -0.5173
33 1 5.8372 -0.1964 1.9537
34 1 5.2121 -1.8630 1.9530
35 1 7.4536 -1.7540 3.4450
36 1 9.6748 -2.5969 0.4393
37 1 12.0147 -3.4627 1.2526
38 1 12.0037 -4.4583 4.6636
39 1 13.1689 -3.8037 3.4880
40 1 15.0420 -3.8631 6.6581
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000290487646.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:08
Heat of formation + Delta-G solvation = 46.565113 kcal
Electronic energy + Delta-G solvation = -22358.008194 eV
Core-core repulsion = 18879.175643 eV
Total energy + Delta-G solvation = -3478.832551 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.110 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-42.20961 -40.65892 -38.94902 -36.27442 -35.26428 -35.07700 -32.87609 -31.85377
-30.95487 -28.85854 -27.81789 -25.33605 -24.56560 -23.52132 -22.57817 -21.67398
-20.86938 -19.68387 -18.69150 -18.32672 -18.09948 -17.49629 -17.01702 -16.77885
-16.18218 -16.04825 -15.72235 -15.29650 -14.75522 -14.67240 -14.49349 -14.19072
-13.98557 -13.82472 -13.69281 -13.64048 -13.33144 -13.09792 -12.93510 -12.72084
-12.51414 -12.42825 -12.28564 -12.06490 -11.93410 -11.61301 -11.54418 -11.39209
-10.88089 -10.72237 -9.75807 -9.37184 -9.32434 -9.12075 -8.33282 -6.47642
0.07365 0.70650 0.95473 1.11297 1.36929 1.39607 1.40566 1.47105
1.50319 1.86172 2.24327 2.30791 2.44769 2.98408 3.50207 3.92416
3.96215 4.03275 4.10214 4.23365 4.28949 4.46015 4.54405 4.68652
4.75857 4.79675 4.80496 4.90185 4.92800 4.93667 5.02316 5.07379
5.14304 5.20421 5.33599 5.41530 5.55894 5.68054 5.79411 5.94356
6.24658 6.30801 6.63998 7.01102 7.14623 7.22262 8.74082
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.028412 B = 0.001950 C = 0.001881
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 985.274782 B =14354.693915 C =14881.223115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 C -0.185 4.185
3 C -0.150 4.150
4 C -0.136 4.136
5 C -0.185 4.185
6 C -0.028 4.028
7 C -0.117 4.117
8 C 0.521 3.479
9 O -0.549 6.549
10 N -0.627 5.627
11 C 0.264 3.736
12 C -0.294 4.294
13 C 0.055 3.945
14 N -0.344 5.344
15 C 0.272 3.728
16 C -0.549 4.549
17 H 0.052 0.948
18 C 0.018 3.982
19 N -0.920 5.920
20 Si 0.972 3.028
21 H -0.273 1.273
22 H -0.273 1.273
23 H -0.270 1.270
24 N -0.347 5.347
25 S 0.078 5.922
26 H 0.082 0.918
27 H 0.072 0.928
28 H 0.089 0.911
29 H 0.155 0.845
30 H 0.151 0.849
31 H 0.088 0.912
32 H 0.073 0.927
33 H 0.125 0.875
34 H 0.118 0.882
35 H 0.425 0.575
36 H 0.168 0.832
37 H 0.200 0.800
38 H 0.021 0.979
39 H 0.058 0.942
40 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.405 8.237 -12.344 30.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.303 4.303
3 C -0.180 4.180
4 C -0.166 4.166
5 C -0.302 4.302
6 C -0.068 4.068
7 C -0.157 4.157
8 C 0.309 3.691
9 O -0.425 6.425
10 N -0.276 5.276
11 C 0.009 3.991
12 C -0.325 4.325
13 C -0.094 4.094
14 N -0.126 5.126
15 C 0.153 3.847
16 C -0.587 4.587
17 H 0.071 0.929
18 C -0.182 4.182
19 N -0.559 5.559
20 Si 0.796 3.204
21 H -0.198 1.198
22 H -0.198 1.198
23 H -0.195 1.195
24 N -0.178 5.178
25 S 0.342 5.658
26 H 0.100 0.900
27 H 0.091 0.909
28 H 0.108 0.892
29 H 0.172 0.828
30 H 0.169 0.831
31 H 0.106 0.894
32 H 0.092 0.908
33 H 0.143 0.857
34 H 0.136 0.864
35 H 0.263 0.737
36 H 0.185 0.815
37 H 0.217 0.783
38 H 0.039 0.961
39 H 0.076 0.924
40 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -26.038 6.381 -11.677 29.241
hybrid contribution 0.771 1.823 0.294 2.001
sum -25.268 8.204 -11.383 28.902
Atomic orbital electron populations
1.20434 0.86320 1.03997 1.03492 1.24862 1.01091 0.95258 1.09045
1.20322 0.92801 1.00096 1.04770 1.20362 0.96925 0.96087 1.03210
1.24379 0.98104 0.96682 1.11017 1.19764 0.89217 1.02304 0.95477
1.21674 0.89371 1.04981 0.99662 1.21484 0.89356 0.76387 0.81850
1.90628 1.68084 1.51698 1.32096 1.42738 1.09864 1.63718 1.11317
1.19525 0.87719 0.99232 0.92592 1.21728 0.94150 1.16562 1.00093
1.23177 1.00432 1.00820 0.84952 1.48836 1.10471 1.47918 1.05395
1.19339 0.80797 0.95350 0.89184 1.21368 1.17984 1.00841 1.18499
0.92933 1.25748 0.95183 0.98681 0.98614 1.69987 1.22568 1.26092
1.37213 0.85395 0.77928 0.78763 0.78317 1.19816 1.19794 1.19468
1.77254 0.93653 1.25193 1.21733 1.84391 0.97122 1.10347 1.73931
0.89982 0.90949 0.89227 0.82758 0.83098 0.89354 0.90801 0.85696
0.86356 0.73718 0.81450 0.78295 0.96085 0.92391 0.91829
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.69 10.38 71.24 0.74 0.05 16
2 C -0.19 -2.49 6.51 24.59 0.16 -2.33 16
3 C -0.15 -1.99 10.05 21.22 0.21 -1.78 16
4 C -0.14 -1.96 10.05 21.21 0.21 -1.74 16
5 C -0.18 -2.93 5.76 24.59 0.14 -2.79 16
6 C -0.03 -0.47 5.00 29.85 0.15 -0.32 16
7 C -0.12 -1.80 5.68 29.85 0.17 -1.63 16
8 C 0.52 13.21 7.80 87.66 0.68 13.89 16
9 O -0.55 -17.69 13.11 -3.05 -0.04 -17.73 16
10 N -0.63 -18.07 5.45 -307.52 -1.68 -19.74 16
11 C 0.26 10.44 8.11 133.33 1.08 11.52 16
12 C -0.29 -11.49 9.61 22.11 0.21 -11.27 16
13 C 0.05 2.18 11.43 83.52 0.96 3.13 16
14 N -0.34 -16.29 3.67 -351.84 -1.29 -17.58 16
15 C 0.27 14.22 6.26 85.64 0.54 14.75 16
16 C -0.55 -31.08 9.24 25.60 0.24 -30.84 16
17 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16
18 C 0.02 1.01 5.46 84.65 0.46 1.47 16
19 N -0.92 -52.23 13.29 21.45 0.28 -51.94 16
20 Si 0.97 43.57 29.54 68.60 2.03 45.59 16
21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16
23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
24 N -0.35 -16.19 12.42 -54.45 -0.68 -16.87 16
25 S 0.08 1.21 23.31 -56.49 -1.32 -0.11 16
26 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16
27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16
28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16
29 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16
30 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16
31 H 0.09 1.56 8.10 -2.39 -0.02 1.55 16
32 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16
33 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16
34 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16
35 H 0.43 9.66 8.82 -92.70 -0.82 8.84 16
36 H 0.17 6.27 5.92 -2.91 -0.02 6.25 16
37 H 0.20 6.27 8.06 -2.91 -0.02 6.25 16
38 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16
39 H 0.06 2.96 8.07 -2.38 -0.02 2.94 16
40 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16
Total: -1.00 -70.56 361.59 3.51 -67.05
By element:
Atomic # 1 Polarization: 18.96 SS G_CDS: 0.25 Total: 19.21 kcal
Atomic # 6 Polarization: -13.84 SS G_CDS: 5.95 Total: -7.89 kcal
Atomic # 7 Polarization: -102.77 SS G_CDS: -3.36 Total: -106.13 kcal
Atomic # 8 Polarization: -17.69 SS G_CDS: -0.04 Total: -17.73 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal
Atomic # 16 Polarization: 1.21 SS G_CDS: -1.32 Total: -0.11 kcal
Total: -70.56 3.51 -67.05 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000290487646.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.615 kcal
(2) G-P(sol) polarization free energy of solvation -70.562 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.053 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.050 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.565 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds