Wall clock time and date at job start Tue Mar 31 2020 12:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50689 * 119.99985 * 2 1 4 4 N 1.46896 * 109.47437 * 124.04942 * 3 2 1 5 5 C 1.46898 * 110.99920 * 294.44097 * 4 3 2 6 6 C 1.50699 * 109.46969 * 288.01841 * 5 4 3 7 7 H 1.08002 * 119.99731 * 354.62494 * 6 5 4 8 8 C 1.37880 * 120.00139 * 174.63044 * 6 5 4 9 9 N 1.31510 * 119.99766 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99893 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47382 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47317 * 119.99619 * 10 8 6 13 13 H 1.48503 * 109.47178 * 239.99497 * 10 8 6 14 14 C 1.46903 * 110.99715 * 58.38951 * 4 3 2 15 15 C 1.50703 * 109.47372 * 66.05178 * 14 4 3 16 16 C 1.37871 * 120.26239 * 115.17287 * 15 14 4 17 17 C 1.39664 * 118.81280 * 180.17459 * 16 15 14 18 18 O 1.22094 * 120.20413 * 179.87986 * 17 16 15 19 19 N 1.36355 * 119.59547 * 359.59529 * 17 16 15 20 20 C 1.37156 * 127.30603 * 180.21672 * 19 17 16 21 21 C 1.50699 * 121.69557 * 0.02602 * 20 19 17 22 22 C 1.30887 * 116.61333 * 180.02562 * 20 19 17 23 23 S 1.75714 * 109.69842 * 0.02562 * 22 20 19 24 24 C 1.35364 * 118.86335 * 0.26232 * 19 17 16 25 25 N 1.32421 * 120.25495 * 295.00150 * 15 14 4 26 26 H 1.08000 * 120.00427 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99899 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99720 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47462 * 4.04620 * 3 2 1 30 30 H 1.09000 * 109.47248 * 244.05063 * 3 2 1 31 31 H 1.08997 * 109.47584 * 48.01892 * 5 4 3 32 32 H 1.09005 * 109.47312 * 168.02016 * 5 4 3 33 33 H 0.97004 * 119.99951 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47494 * 306.04800 * 14 4 3 35 35 H 1.09004 * 109.46893 * 186.05122 * 14 4 3 36 36 H 1.07998 * 120.59518 * 0.02562 * 16 15 14 37 37 H 1.08994 * 109.47453 * 89.99723 * 21 20 19 38 38 H 1.09003 * 109.47637 * 210.00144 * 21 20 19 39 39 H 1.09007 * 109.47345 * 329.99439 * 21 20 19 40 40 H 1.08009 * 125.15082 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9798 1.3414 1.1475 5 6 2.2366 1.3554 2.4145 6 6 1.5833 2.7009 2.5987 7 1 1.7777 3.4965 1.8947 8 6 0.7375 2.9163 3.6661 9 7 0.5006 1.9473 4.5232 10 14 -0.0728 4.5838 3.8940 11 1 0.3539 5.4950 2.8019 12 1 -1.5490 4.4258 3.8590 13 1 0.3328 5.1565 5.2028 14 6 3.9236 0.2166 1.1033 15 6 4.8342 0.3712 -0.0876 16 6 6.1861 0.5724 0.0929 17 6 7.0014 0.7155 -1.0320 18 8 8.2018 0.8968 -0.9015 19 7 6.4496 0.6456 -2.2769 20 6 7.0971 0.7593 -3.4807 21 6 8.5844 0.9879 -3.5613 22 6 6.3575 0.6592 -4.5560 23 16 4.6809 0.3978 -4.0995 24 6 5.1160 0.4433 -2.3901 25 7 4.3424 0.3116 -1.3157 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3574 2.1322 0.0725 30 1 2.6345 1.3948 -0.9241 31 1 1.4713 0.5795 2.3955 32 1 2.9229 1.1687 3.2405 33 1 -0.0948 2.0987 5.2740 34 1 3.3705 -0.7188 1.0187 35 1 4.5186 0.2054 2.0165 36 1 6.6068 0.6208 1.0864 37 1 9.0985 0.0273 -3.5930 38 1 8.8168 1.5542 -4.4632 39 1 8.9141 1.5476 -2.6860 40 1 6.7225 0.7269 -5.5703 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292105732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:17 Heat of formation + Delta-G solvation = 78.009359 kcal Electronic energy + Delta-G solvation = -24288.938376 eV Core-core repulsion = 20811.469350 eV Total energy + Delta-G solvation = -3477.469026 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52740 -38.48961 -37.86922 -36.61680 -32.95402 -32.81469 -31.84056 -30.94933 -28.88426 -27.96235 -26.48641 -25.18381 -24.15188 -22.67334 -21.22371 -20.84956 -19.09544 -18.72853 -18.22586 -16.99832 -16.91883 -16.23401 -15.43780 -15.21855 -14.95335 -14.56220 -14.34766 -14.07191 -13.85024 -13.69879 -13.56438 -13.40036 -13.25303 -13.06784 -12.21450 -12.14883 -11.92619 -11.55489 -11.46969 -11.16315 -10.98311 -10.69842 -10.64284 -10.49103 -10.38332 -10.16054 -10.00978 -9.86487 -9.36823 -9.17864 -8.62553 -8.40620 -7.74229 -7.29068 -6.00504 -4.01095 0.05562 0.39833 1.13137 1.18350 1.77290 2.06024 2.96902 3.32269 3.39917 3.43911 3.46861 3.98239 4.07298 4.44493 4.59616 4.68777 4.85544 5.01564 5.17720 5.21758 5.30896 5.35485 5.41864 5.61854 5.71374 5.75411 5.82874 5.94732 6.05843 6.19043 6.33940 6.36939 6.52193 6.82618 7.20313 7.26173 7.35258 7.47786 7.54231 7.62548 7.82069 8.05881 8.17591 8.51958 9.06808 9.62684 11.10094 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.003460 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.528782 B = 8091.155038 C = 8695.198668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.082 3.918 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.501 4.501 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.093 3.907 15 C 0.237 3.763 16 C -0.302 4.302 17 C 0.529 3.471 18 O -0.531 6.531 19 N -0.458 5.458 20 C 0.100 3.900 21 C -0.106 4.106 22 C -0.252 4.252 23 S 0.202 5.798 24 C 0.297 3.703 25 N -0.492 5.492 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.009 0.991 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.653 -5.855 -19.809 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.187 4.187 3 C -0.045 4.045 4 N -0.245 5.245 5 C 0.065 3.935 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.036 4.036 15 C 0.109 3.891 16 C -0.330 4.330 17 C 0.333 3.667 18 O -0.410 6.410 19 N -0.170 5.170 20 C -0.009 4.009 21 C -0.165 4.165 22 C -0.388 4.388 23 S 0.454 5.546 24 C -0.070 4.070 25 N -0.219 5.219 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.182 0.818 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 9.587 -5.620 -20.219 23.072 hybrid contribution 0.898 0.330 1.177 1.517 sum 10.485 -5.290 -19.041 22.372 Atomic orbital electron populations 1.23689 0.96096 1.00981 1.01813 1.23476 0.96335 0.99856 0.99040 1.21457 0.94628 0.94143 0.94307 1.62508 1.18569 1.37972 1.05470 1.19819 0.92080 0.97660 0.83899 1.21136 1.25764 0.97213 1.09912 0.91919 1.24952 0.96668 0.96900 0.95965 1.69963 1.37299 1.31922 1.14574 0.86488 0.78978 0.84191 0.78051 1.19689 1.21149 1.21077 1.21153 0.94460 0.95654 0.92332 1.21634 0.92359 0.84011 0.91115 1.22591 0.93776 1.17532 0.99146 1.17340 0.89322 0.79306 0.80692 1.90897 1.14493 1.51584 1.84076 1.45197 1.08493 1.54348 1.08946 1.19586 0.97980 1.00246 0.83104 1.20972 0.86139 1.04059 1.05362 1.24866 0.96535 1.14591 1.02847 1.85286 1.04538 1.77138 0.87669 1.26241 0.81863 0.96243 1.02623 1.68191 1.32625 1.24376 0.96749 0.88614 0.89835 0.88612 0.90080 0.89899 0.97341 0.95725 0.93047 0.92391 0.88734 0.81795 0.89737 0.89787 0.87978 0.78527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 14.32 29.02 0.42 -2.90 16 2 C -0.17 -3.04 7.56 -36.03 -0.27 -3.31 16 3 C 0.08 1.61 5.27 -4.98 -0.03 1.58 16 4 N -0.52 -10.99 4.65 -238.97 -1.11 -12.11 16 5 C 0.19 4.78 4.62 -4.98 -0.02 4.76 16 6 C -0.50 -13.87 8.44 -34.44 -0.29 -14.16 16 7 H 0.06 1.75 7.70 -52.49 -0.40 1.34 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 10 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.09 1.62 5.19 -4.97 -0.03 1.60 16 15 C 0.24 3.83 6.22 -82.47 -0.51 3.32 16 16 C -0.30 -4.74 9.67 -39.18 -0.38 -5.12 16 17 C 0.53 8.35 7.50 -15.01 -0.11 8.24 16 18 O -0.53 -9.16 14.79 4.83 0.07 -9.09 16 19 N -0.46 -6.13 2.82 -62.10 -0.18 -6.31 16 20 C 0.10 1.00 6.60 -81.90 -0.54 0.46 16 21 C -0.11 -0.89 9.41 36.01 0.34 -0.55 16 22 C -0.25 -1.82 10.79 29.05 0.31 -1.51 16 23 S 0.20 1.81 23.37 -107.50 -2.51 -0.70 16 24 C 0.30 3.93 8.32 -87.91 -0.73 3.20 16 25 N -0.49 -7.57 7.70 -9.02 -0.07 -7.63 16 26 H 0.10 1.74 7.84 -52.49 -0.41 1.33 16 27 H 0.08 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.10 1.65 6.65 -52.49 -0.35 1.30 16 29 H 0.08 1.74 6.93 -51.93 -0.36 1.38 16 30 H 0.08 1.52 5.60 -51.93 -0.29 1.23 16 31 H 0.01 0.23 6.95 -51.93 -0.36 -0.13 16 32 H 0.02 0.66 7.81 -51.93 -0.41 0.25 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.06 0.99 6.08 -51.93 -0.32 0.67 16 35 H 0.09 1.57 7.63 -51.93 -0.40 1.17 16 36 H 0.16 2.40 7.98 -52.49 -0.42 1.98 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.10 1.15 5.92 -51.92 -0.31 0.84 16 40 H 0.20 0.67 8.06 -52.48 -0.42 0.24 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -32.19 344.61 -9.68 -41.86 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.84 Total: 0.71 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.94 Total: -2.90 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.62 Total: -51.66 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.51 Total: -0.70 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.19 -9.68 -41.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292105732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.874 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds