Wall clock time and date at job start Tue Mar 31 2020 12:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 119.99768 * 2 1 4 4 N 1.46502 * 109.47135 * 125.00172 * 3 2 1 5 5 C 1.46498 * 120.00144 * 270.00056 * 4 3 2 6 6 C 1.50699 * 109.46988 * 269.99880 * 5 4 3 7 7 H 1.07998 * 120.00151 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00047 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00204 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00107 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47286 * 90.00187 * 10 8 6 12 12 H 1.48504 * 109.46889 * 210.00603 * 10 8 6 13 13 H 1.48508 * 109.46957 * 330.00105 * 10 8 6 14 14 C 1.34778 * 119.99920 * 90.00112 * 4 3 2 15 15 O 1.21703 * 119.99739 * 180.02562 * 14 4 3 16 16 C 1.46385 * 120.00177 * 359.97438 * 14 4 3 17 17 C 1.34847 * 120.00094 * 185.55556 * 16 14 4 18 18 C 1.50702 * 119.99977 * 5.69532 * 17 16 14 19 19 C 1.47144 * 120.00065 * 185.96649 * 17 16 14 20 20 C 1.39871 * 120.18022 * 104.73173 * 19 17 16 21 21 C 1.37838 * 119.84064 * 180.02562 * 20 19 17 22 22 C 1.38461 * 120.20518 * 0.02562 * 21 20 19 23 23 C 1.38318 * 120.36628 * 359.97438 * 22 21 20 24 24 C 1.38075 * 120.15685 * 359.72321 * 23 22 21 25 25 Cl 1.73600 * 120.10620 * 180.30055 * 24 23 22 26 26 H 1.07999 * 120.00050 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99729 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00268 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47457 * 4.99903 * 3 2 1 30 30 H 1.09003 * 109.47156 * 245.00074 * 3 2 1 31 31 H 1.08998 * 109.46883 * 29.99710 * 5 4 3 32 32 H 1.09000 * 109.47332 * 149.99976 * 5 4 3 33 33 H 0.96999 * 120.00478 * 179.97438 * 9 8 6 34 34 H 1.07999 * 119.99944 * 5.56617 * 16 14 4 35 35 H 1.09004 * 109.47044 * 54.79206 * 18 17 16 36 36 H 1.09005 * 109.47260 * 174.78641 * 18 17 16 37 37 H 1.08998 * 109.47280 * 294.78784 * 18 17 16 38 38 H 1.08006 * 120.07934 * 359.97366 * 20 19 17 39 39 H 1.08001 * 119.89517 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.81219 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.91920 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8442 3.3436 2.4804 7 1 3.3032 3.8371 1.6365 8 6 2.5184 4.0667 3.6082 9 7 1.9591 3.4660 4.6357 10 14 2.8715 5.8998 3.6768 11 1 1.6985 6.6496 3.1599 12 1 3.1353 6.3008 5.0821 13 1 4.0616 6.2062 2.8429 14 6 4.2497 0.8663 0.9823 15 8 5.0223 0.8882 1.9224 16 6 4.6841 0.3332 -0.3100 17 6 5.9012 -0.2347 -0.4303 18 6 6.7623 -0.4370 0.7898 19 6 6.3910 -0.6515 -1.7537 20 6 7.3638 0.1060 -2.4141 21 6 7.8172 -0.2906 -3.6539 22 6 7.3123 -1.4354 -4.2468 23 6 6.3501 -2.1910 -3.6014 24 6 5.8897 -1.8110 -2.3564 25 17 4.6877 -2.7645 -1.5441 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6212 1.4027 -0.9314 31 1 1.4888 1.6966 2.5459 32 1 3.0990 1.3604 3.2259 33 1 1.7302 3.9746 5.4293 34 1 4.0299 0.3950 -1.1670 35 1 6.2055 -1.0015 1.5379 36 1 7.6608 -0.9886 0.5131 37 1 7.0432 0.5325 1.2011 38 1 7.7581 1.0001 -1.9540 39 1 8.5681 0.2940 -4.1647 40 1 7.6719 -1.7401 -5.2186 41 1 5.9616 -3.0829 -4.0703 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292591869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:54 Heat of formation + Delta-G solvation = 4.588845 kcal Electronic energy + Delta-G solvation = -23911.943055 eV Core-core repulsion = 20396.953820 eV Total energy + Delta-G solvation = -3514.989236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.99678 -40.13979 -37.42127 -37.37596 -35.88803 -35.05970 -33.67818 -31.76858 -31.11491 -30.04309 -28.40966 -26.88610 -25.37954 -24.02650 -23.50587 -21.51263 -20.81713 -19.35188 -18.65656 -18.21587 -17.73301 -17.07952 -16.51085 -16.37517 -16.11291 -15.95601 -15.48338 -15.03152 -14.76017 -14.73441 -14.46638 -14.24229 -14.02504 -13.75423 -13.51727 -13.32410 -13.06809 -12.93614 -12.63784 -12.60071 -12.47700 -12.43822 -12.38277 -12.25210 -12.20242 -11.76342 -11.68072 -10.64333 -10.47768 -10.34458 -10.29161 -9.87743 -9.63053 -9.37547 -8.21533 -6.36864 -0.01151 0.24940 0.38906 1.17322 1.31039 1.36376 1.39173 1.49854 2.30273 2.44593 2.51112 2.65470 3.07444 3.42657 3.81618 3.93475 3.96415 4.10774 4.13525 4.24687 4.37106 4.41658 4.43906 4.50640 4.67252 4.76877 4.78500 4.90091 4.96169 5.02932 5.07576 5.21185 5.23369 5.27954 5.38206 5.43279 5.52584 5.55372 5.68871 5.76243 5.84918 5.95178 6.06948 6.70194 6.78941 7.28252 7.48312 8.85380 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.003644 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.798920 B = 7682.530942 C = 8589.565409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.182 4.182 3 C 0.135 3.865 4 N -0.595 5.595 5 C 0.267 3.733 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.968 3.032 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.272 1.272 14 C 0.528 3.472 15 O -0.584 6.584 16 C -0.199 4.199 17 C 0.004 3.996 18 C -0.100 4.100 19 C -0.065 4.065 20 C -0.099 4.099 21 C -0.108 4.108 22 C -0.098 4.098 23 C -0.113 4.113 24 C -0.038 4.038 25 Cl -0.075 7.075 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.019 0.981 32 H -0.002 1.002 33 H 0.267 0.733 34 H 0.144 0.856 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.020 -11.291 -22.275 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.201 4.201 3 C 0.013 3.987 4 N -0.325 5.325 5 C 0.146 3.854 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.197 1.197 14 C 0.320 3.680 15 O -0.467 6.467 16 C -0.220 4.220 17 C 0.002 3.998 18 C -0.156 4.156 19 C -0.066 4.066 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.131 4.131 24 C -0.064 4.064 25 Cl -0.046 7.046 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.037 0.963 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.155 0.845 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.196 -11.314 -21.523 25.660 hybrid contribution -0.401 0.784 1.023 1.349 sum 7.795 -10.531 -20.500 24.329 Atomic orbital electron populations 1.24032 0.95331 1.02919 0.98303 1.23292 0.96834 0.98097 1.01897 1.20798 0.92566 0.96214 0.89131 1.48086 1.11507 1.59814 1.13047 1.18672 0.93706 0.92767 0.80289 1.21691 1.40615 0.94325 1.01415 0.92914 1.25859 0.94618 1.03802 0.94778 1.70059 1.42834 1.38121 1.05790 0.85407 0.78872 0.79002 0.77469 1.18806 1.20564 1.19724 1.18819 0.81732 0.78354 0.89082 1.90734 1.53334 1.58837 1.43772 1.22766 0.98016 1.04793 0.96393 1.21025 0.93317 0.91636 0.93815 1.20812 0.98324 1.02352 0.94102 1.18789 0.99023 0.95397 0.93406 1.21458 0.95038 0.99427 0.95802 1.21545 0.99884 0.97024 0.94168 1.21643 0.94950 0.93953 1.00993 1.21295 0.97949 1.01596 0.92277 1.21291 0.95612 0.94093 0.95426 1.98389 1.55436 1.71168 1.79623 0.88010 0.86609 0.87633 0.90307 0.88233 0.96306 0.98434 0.92412 0.83888 0.92270 0.90819 0.91187 0.84458 0.82187 0.81631 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 14.32 67.79 0.97 -3.47 16 2 C -0.18 -5.53 9.85 25.65 0.25 -5.28 16 3 C 0.14 4.70 5.59 85.63 0.48 5.17 16 4 N -0.60 -27.12 2.44 -835.57 -2.04 -29.15 16 5 C 0.27 15.03 5.16 85.63 0.44 15.47 16 6 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.49 5.46 84.65 0.46 0.95 16 9 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 10 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 14 C 0.53 23.67 7.54 86.36 0.65 24.32 16 15 O -0.58 -30.78 12.82 -4.36 -0.06 -30.83 16 16 C -0.20 -6.71 8.65 23.61 0.20 -6.51 16 17 C 0.00 0.13 4.61 -18.30 -0.08 0.04 16 18 C -0.10 -3.21 8.34 71.24 0.59 -2.62 16 19 C -0.07 -1.52 5.20 -20.13 -0.10 -1.63 16 20 C -0.10 -1.83 9.80 22.57 0.22 -1.61 16 21 C -0.11 -1.34 10.03 22.23 0.22 -1.12 16 22 C -0.10 -1.07 10.04 22.34 0.22 -0.84 16 23 C -0.11 -1.68 9.82 22.25 0.22 -1.46 16 24 C -0.04 -0.79 6.36 22.65 0.14 -0.65 16 25 Cl -0.08 -1.76 27.83 -2.72 -0.08 -1.84 16 26 H 0.10 2.62 7.84 -2.91 -0.02 2.60 16 27 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.11 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.08 2.82 7.72 -2.39 -0.02 2.80 16 30 H 0.10 2.90 6.03 -2.39 -0.01 2.89 16 31 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 32 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.14 4.14 6.15 -2.91 -0.02 4.13 16 35 H 0.06 2.17 7.43 -2.39 -0.02 2.16 16 36 H 0.07 1.91 7.99 -2.38 -0.02 1.89 16 37 H 0.07 2.56 7.12 -2.39 -0.02 2.54 16 38 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 40 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -74.63 367.63 6.30 -68.33 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.02 Total: 13.88 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 5.14 Total: -11.10 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.75 Total: -86.11 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.06 Total: -30.83 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -74.63 6.30 -68.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292591869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.918 kcal (2) G-P(sol) polarization free energy of solvation -74.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds