Wall clock time and date at job start Tue Mar 31 2020 12:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 C 1.50703 * 109.46949 * 179.97438 * 3 2 1 5 5 N 1.30133 * 121.05826 * 89.98036 * 4 3 2 6 6 S 1.69941 * 105.76298 * 180.02562 * 5 4 3 7 7 C 1.72300 * 94.57806 * 0.02562 * 6 5 4 8 8 N 1.38316 * 127.51039 * 180.02562 * 7 6 5 9 9 C 1.46508 * 119.99627 * 0.02562 * 8 7 6 10 10 C 1.50698 * 109.46930 * 180.02562 * 9 8 7 11 11 C 1.38297 * 119.93202 * 89.99834 * 10 9 8 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 N 1.31289 * 121.06577 * 270.27433 * 4 3 2 26 26 H 1.08997 * 109.47521 * 299.99557 * 1 2 3 27 27 H 1.09007 * 109.47198 * 59.99550 * 1 2 3 28 28 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46971 * 240.00581 * 2 1 3 30 30 H 1.08997 * 109.47102 * 120.00420 * 2 1 3 31 31 H 1.09006 * 109.46828 * 60.00493 * 3 2 1 32 32 H 1.08997 * 109.47580 * 300.00127 * 3 2 1 33 33 H 0.96994 * 120.00288 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.46889 * 59.99833 * 9 8 7 35 35 H 1.09004 * 109.46798 * 299.99990 * 9 8 7 36 36 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2188 1.4420 -1.1139 6 16 5.8579 1.4415 -0.6649 7 6 5.5367 1.4413 1.0279 8 7 6.4577 1.4414 2.0599 9 6 7.8921 1.4422 1.7615 10 6 8.6732 1.4415 3.0502 11 6 9.0314 0.2427 3.6394 12 6 9.7468 0.2386 4.8206 13 6 10.1070 1.4403 5.4166 14 8 10.8106 1.4396 6.5775 15 6 11.2275 0.2437 7.0399 16 1 10.9292 -0.6639 6.5363 17 6 12.0393 0.1790 8.1622 18 7 12.4032 1.2845 8.7755 19 14 12.6175 -1.4778 8.8024 20 1 12.0739 -2.5585 7.9410 21 1 14.1015 -1.5264 8.7809 22 1 12.1363 -1.6660 10.1947 23 6 9.7413 2.6425 4.8253 24 6 9.0308 2.6397 3.6410 25 7 4.2240 1.4373 1.1255 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 6.1540 1.4409 2.9810 34 1 8.1426 2.3326 1.1847 35 1 8.1436 0.5526 1.1841 36 1 8.7514 -0.6914 3.1752 37 1 10.0258 -0.6979 5.2804 38 1 12.9708 1.2393 9.5607 39 1 10.0161 3.5785 5.2887 40 1 8.7500 3.5743 3.1784 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292667019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:20 Heat of formation + Delta-G solvation = 37.725629 kcal Electronic energy + Delta-G solvation = -22352.574013 eV Core-core repulsion = 18873.358153 eV Total energy + Delta-G solvation = -3479.215860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.25933 -39.34513 -37.52255 -35.99386 -34.72971 -32.54950 -31.74573 -30.41424 -29.73418 -28.38022 -26.07798 -24.97475 -23.57109 -22.20026 -22.00617 -21.03374 -19.87529 -18.80208 -18.20020 -17.27239 -17.03488 -15.69387 -15.63142 -15.13081 -14.93479 -14.74607 -14.64020 -14.32974 -13.92081 -13.77858 -13.54498 -13.17585 -12.91999 -12.66241 -12.43897 -12.30597 -11.84728 -11.68710 -11.56095 -11.50341 -11.41164 -11.06475 -11.05089 -10.96361 -10.93976 -10.78675 -10.54391 -9.66208 -9.54390 -9.45652 -9.01981 -8.42486 -8.21488 -7.48689 -6.62624 -4.21378 0.72624 0.95986 1.69374 1.91150 2.00972 2.64901 2.88096 3.03757 3.04654 3.09877 3.82544 4.15479 4.38781 4.71397 4.76619 4.81048 4.91750 4.97810 5.04405 5.10449 5.23459 5.38683 5.42609 5.49285 5.51818 5.57058 5.62491 5.67413 5.87236 5.90998 5.99984 6.01715 6.19481 6.41845 6.48253 6.66537 6.82385 6.98779 7.09767 7.14978 7.23809 7.57528 7.75269 7.81736 8.82443 9.48663 10.54471 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.002089 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.684222 B =13402.996661 C =13965.929907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.032 4.032 4 C 0.310 3.690 5 N -0.510 5.510 6 S 0.165 5.835 7 C 0.348 3.652 8 N -0.655 5.655 9 C 0.176 3.824 10 C -0.224 4.224 11 C -0.044 4.044 12 C -0.238 4.238 13 C 0.164 3.836 14 O -0.169 6.169 15 C -0.394 4.394 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.856 5.856 19 Si 0.944 3.056 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.195 4.195 24 C -0.049 4.049 25 N -0.591 5.591 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.418 0.582 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.272 0.728 39 H 0.120 0.880 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 -1.155 -15.112 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.074 4.074 4 C 0.020 3.980 5 N -0.343 5.343 6 S 0.299 5.701 7 C -0.031 4.031 8 N -0.293 5.293 9 C 0.054 3.946 10 C -0.225 4.225 11 C -0.063 4.063 12 C -0.257 4.257 13 C 0.109 3.891 14 O -0.071 6.071 15 C -0.470 4.470 16 H 0.113 0.887 17 C -0.165 4.165 18 N -0.489 5.489 19 Si 0.768 3.232 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.215 4.215 24 C -0.067 4.067 25 N -0.328 5.328 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.257 0.743 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.864 -0.903 -15.986 21.180 hybrid contribution -0.158 -0.846 1.628 1.841 sum -14.021 -1.748 -14.358 20.145 Atomic orbital electron populations 1.21749 0.94980 1.01962 1.02029 1.21457 0.96133 0.95142 1.02806 1.20272 0.84006 0.98922 1.04205 1.23116 0.99264 0.93247 0.82413 1.77515 0.97084 1.34508 1.25211 1.84928 1.13741 1.72959 0.98506 1.25308 0.90218 0.92010 0.95567 1.44706 1.03782 1.74765 1.06012 1.20397 0.75840 1.02113 0.96222 1.18916 1.10157 0.94007 0.99450 1.20635 0.95172 0.96312 0.94198 1.21160 1.07059 0.98597 0.98904 1.19463 0.90291 0.93328 0.86057 1.83976 1.59453 1.33340 1.30311 1.21437 1.30715 0.83000 1.11868 0.88719 1.25358 0.95828 0.99539 0.95748 1.70039 1.32797 1.27150 1.18924 0.85605 0.78802 0.79784 0.79019 1.18977 1.19966 1.19982 1.20214 1.06935 0.96403 0.97931 1.20524 0.95708 0.96467 0.94046 1.67360 1.03048 1.32598 1.29797 0.92400 0.92533 0.92445 0.91646 0.91386 0.88980 0.89311 0.74288 0.90758 0.90819 0.87252 0.85247 0.91769 0.86189 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 3 C -0.03 -0.30 5.75 -27.88 -0.16 -0.46 16 4 C 0.31 3.96 6.82 -159.03 -1.08 2.87 16 5 N -0.51 -6.93 12.15 29.54 0.36 -6.57 16 6 S 0.17 2.02 23.17 -107.50 -2.49 -0.47 16 7 C 0.35 4.45 8.57 -86.35 -0.74 3.71 16 8 N -0.65 -7.65 5.69 -62.74 -0.36 -8.00 16 9 C 0.18 1.97 5.85 -5.19 -0.03 1.94 16 10 C -0.22 -3.18 5.25 -104.58 -0.55 -3.73 16 11 C -0.04 -0.70 9.69 -39.61 -0.38 -1.09 16 12 C -0.24 -4.65 9.17 -39.39 -0.36 -5.01 16 13 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 14 O -0.17 -4.53 9.76 0.05 0.00 -4.53 16 15 C -0.39 -10.39 9.49 30.89 0.29 -10.10 16 16 H 0.10 2.29 5.20 -52.49 -0.27 2.02 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -23.97 13.67 55.48 0.76 -23.21 16 19 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.20 -3.71 9.99 -39.39 -0.39 -4.10 16 24 C -0.05 -0.75 9.69 -39.61 -0.38 -1.13 16 25 N -0.59 -8.09 10.61 -14.58 -0.15 -8.24 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.42 4.95 8.59 -40.82 -0.35 4.60 16 34 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -29.38 359.23 -10.56 -39.93 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.12 Total: 5.67 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.94 Total: -14.47 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.61 Total: -46.03 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.00 Total: -4.53 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.49 Total: -0.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.38 -10.56 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292667019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.659 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds