Wall clock time and date at job start Tue Mar 31 2020 12:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99791 * 2 1 4 4 N 1.46504 * 109.47076 * 125.00556 * 3 2 1 5 5 C 1.46506 * 119.99934 * 261.23398 * 4 3 2 6 6 C 1.50701 * 109.46875 * 269.99677 * 5 4 3 7 7 H 1.08005 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00070 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99791 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99895 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47060 * 90.00097 * 10 8 6 12 12 H 1.48501 * 109.47001 * 209.99736 * 10 8 6 13 13 H 1.48495 * 109.47265 * 329.99551 * 10 8 6 14 14 C 1.34770 * 120.00091 * 81.22605 * 4 3 2 15 15 O 1.21700 * 120.00282 * 183.69087 * 14 4 3 16 16 C 1.46430 * 120.00193 * 3.69473 * 14 4 3 17 17 C 1.50706 * 119.99778 * 37.64696 * 16 14 4 18 18 C 1.34804 * 120.00285 * 217.65163 * 16 14 4 19 19 C 1.47205 * 120.00331 * 171.35764 * 18 16 14 20 20 C 1.39865 * 120.16267 * 323.66181 * 19 18 16 21 21 C 1.37876 * 119.85205 * 179.74539 * 20 19 18 22 22 C 1.38404 * 120.18719 * 0.52789 * 21 20 19 23 23 C 1.38492 * 120.33066 * 359.74707 * 22 21 20 24 24 Cl 1.73599 * 119.92992 * 179.97438 * 23 22 21 25 25 C 1.38037 * 120.14536 * 359.97190 * 23 22 21 26 26 H 1.07999 * 119.99898 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00127 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00127 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47693 * 5.00786 * 3 2 1 30 30 H 1.09003 * 109.47684 * 245.00220 * 3 2 1 31 31 H 1.09000 * 109.47170 * 29.99144 * 5 4 3 32 32 H 1.08996 * 109.47258 * 149.99919 * 5 4 3 33 33 H 0.96998 * 119.99951 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.46955 * 262.86349 * 17 16 14 35 35 H 1.09005 * 109.47101 * 22.86276 * 17 16 14 36 36 H 1.08996 * 109.46596 * 142.86266 * 17 16 14 37 37 H 1.08005 * 120.00173 * 351.07987 * 18 16 14 38 38 H 1.08004 * 120.06833 * 359.97438 * 20 19 18 39 39 H 1.07996 * 119.90722 * 180.25161 * 21 20 19 40 40 H 1.07995 * 119.83588 * 179.72027 * 22 21 20 41 41 H 1.07992 * 120.09761 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6286 2.0352 2.3636 6 6 3.0864 3.4684 2.2785 7 1 3.5986 3.8201 1.3951 8 6 2.8524 4.3304 3.3288 9 7 2.2301 3.9017 4.4051 10 14 3.4206 6.1068 3.2235 11 1 2.3430 6.9366 2.6273 12 1 3.7346 6.6076 4.5858 13 1 4.6358 6.1883 2.3740 14 6 4.1856 0.7094 1.0387 15 8 4.9301 0.6741 2.0007 16 6 4.5847 0.0757 -0.2196 17 6 4.2354 0.7247 -1.5341 18 6 5.2645 -1.0883 -0.2021 19 6 5.5000 -1.8220 -1.4564 20 6 4.5212 -1.8386 -2.4553 21 6 4.7507 -2.5235 -3.6297 22 6 5.9417 -3.2030 -3.8177 23 6 6.9139 -3.1965 -2.8314 24 17 8.4037 -4.0528 -3.0780 25 6 6.7009 -2.5104 -1.6527 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0897 30 1 2.6213 1.4028 -0.9314 31 1 1.5465 2.0064 2.4913 32 1 3.1079 1.5506 3.2142 33 1 2.0651 4.5082 5.1439 34 1 3.3283 0.2712 -1.9335 35 1 4.0711 1.7913 -1.3804 36 1 5.0542 0.5810 -2.2390 37 1 5.6402 -1.4803 0.7315 38 1 3.5892 -1.3130 -2.3084 39 1 3.9971 -2.5336 -4.4033 40 1 6.1136 -3.7414 -4.7380 41 1 7.4597 -2.5055 -0.8843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293768593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:40 Heat of formation + Delta-G solvation = 16.923541 kcal Electronic energy + Delta-G solvation = -23783.399581 eV Core-core repulsion = 20268.945217 eV Total energy + Delta-G solvation = -3514.454363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21833 -40.16419 -37.56348 -37.32260 -36.07355 -35.00474 -33.68155 -32.22950 -31.34502 -29.44526 -28.58091 -26.83269 -25.64243 -23.77790 -23.48199 -21.72857 -20.92601 -19.46468 -18.64421 -17.74584 -17.57348 -17.40625 -16.71536 -16.44610 -16.22147 -16.06601 -15.47365 -15.06177 -14.88839 -14.58251 -14.38938 -14.23190 -14.16062 -13.66862 -13.50529 -13.36124 -13.26904 -12.96841 -12.66530 -12.60308 -12.36262 -12.27115 -12.24794 -12.19295 -12.17362 -11.83513 -11.65090 -10.83725 -10.65906 -10.58593 -10.22373 -9.78168 -9.50873 -9.22670 -8.23609 -6.39104 -0.33060 0.23910 0.85865 1.15366 1.33094 1.36352 1.39409 1.49879 2.10390 2.33290 2.50835 2.71583 3.05936 3.50006 3.85396 3.88746 3.98804 4.07575 4.09147 4.20958 4.28429 4.40035 4.42400 4.53636 4.66929 4.78498 4.83572 4.90962 4.96453 5.03020 5.06687 5.15916 5.19760 5.23240 5.33536 5.48197 5.53604 5.56563 5.72794 5.77318 5.82320 5.96301 6.03823 6.67063 6.74061 7.24481 7.40627 8.83650 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.002929 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.593466 B = 9556.501317 C =10391.152419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.182 4.182 3 C 0.101 3.899 4 N -0.586 5.586 5 C 0.262 3.738 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.532 3.468 15 O -0.603 6.603 16 C -0.144 4.144 17 C -0.119 4.119 18 C -0.059 4.059 19 C -0.053 4.053 20 C -0.101 4.101 21 C -0.099 4.099 22 C -0.106 4.106 23 C -0.046 4.046 24 Cl -0.075 7.075 25 C -0.108 4.108 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.022 0.978 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.154 0.846 39 H 0.169 0.831 40 H 0.154 0.846 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -14.457 -22.430 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.201 4.201 3 C -0.020 4.020 4 N -0.314 5.314 5 C 0.141 3.859 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.197 1.197 14 C 0.323 3.677 15 O -0.487 6.487 16 C -0.147 4.147 17 C -0.174 4.174 18 C -0.079 4.079 19 C -0.053 4.053 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.073 4.073 24 Cl -0.046 7.046 25 C -0.127 4.127 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.149 0.851 31 H 0.040 0.960 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.172 0.828 39 H 0.186 0.814 40 H 0.171 0.829 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.072 -14.459 -21.777 26.222 hybrid contribution 0.601 0.836 1.249 1.618 sum 2.673 -13.623 -20.528 24.782 Atomic orbital electron populations 1.24051 0.95434 1.02872 0.98237 1.23296 0.96722 0.98077 1.01993 1.21647 0.93030 0.96417 0.90880 1.48069 1.16237 1.50460 1.16665 1.18756 0.94520 0.90680 0.81973 1.21701 1.38026 0.95701 1.02785 0.92590 1.25886 0.94981 1.03792 0.94511 1.70060 1.42447 1.37527 1.06781 0.85388 0.78926 0.78790 0.77550 1.18588 1.20738 1.19668 1.18936 0.81510 0.78515 0.88779 1.90756 1.53775 1.62507 1.41628 1.21739 1.01748 0.96867 0.94337 1.21353 1.03770 1.00249 0.92032 1.21946 0.94898 0.93941 0.97072 1.18776 0.94671 0.98153 0.93735 1.21977 0.99316 0.98239 0.92373 1.21435 0.97023 0.95453 0.97769 1.21496 0.92668 0.99516 0.98734 1.20927 0.89627 0.99896 0.96831 1.98374 1.33531 1.75959 1.96773 1.21277 0.97523 0.96892 0.96981 0.86495 0.88316 0.87057 0.90527 0.85139 0.96001 0.98698 0.92376 0.86988 0.91365 0.89232 0.86832 0.82849 0.81369 0.82861 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 14.32 67.78 0.97 -2.79 16 2 C -0.18 -4.66 9.36 25.65 0.24 -4.42 16 3 C 0.10 3.14 5.39 85.63 0.46 3.60 16 4 N -0.59 -25.47 2.47 -835.51 -2.06 -27.53 16 5 C 0.26 14.49 5.15 85.63 0.44 14.93 16 6 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 7 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.42 5.46 84.66 0.46 0.89 16 9 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 10 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 C 0.53 23.29 7.17 86.38 0.62 23.91 16 15 O -0.60 -33.11 16.30 -4.35 -0.07 -33.18 16 16 C -0.14 -4.37 5.24 -18.52 -0.10 -4.47 16 17 C -0.12 -2.49 6.14 71.24 0.44 -2.05 16 18 C -0.06 -1.62 9.36 23.84 0.22 -1.40 16 19 C -0.05 -1.10 5.17 -20.15 -0.10 -1.20 16 20 C -0.10 -1.51 7.94 22.58 0.18 -1.33 16 21 C -0.10 -1.09 10.03 22.22 0.22 -0.86 16 22 C -0.11 -1.37 9.82 22.37 0.22 -1.15 16 23 C -0.05 -0.81 6.31 22.28 0.14 -0.67 16 24 Cl -0.08 -1.30 28.95 -2.72 -0.08 -1.38 16 25 C -0.11 -2.20 9.57 22.60 0.22 -1.98 16 26 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.10 2.21 7.84 -2.91 -0.02 2.19 16 28 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 29 H 0.08 2.51 7.66 -2.39 -0.02 2.49 16 30 H 0.13 3.16 2.96 -2.39 -0.01 3.16 16 31 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 32 H -0.01 -0.33 7.37 -2.39 -0.02 -0.35 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.11 1.61 5.10 -2.39 -0.01 1.59 16 35 H 0.07 1.60 6.82 -2.38 -0.02 1.59 16 36 H 0.09 1.60 7.01 -2.39 -0.02 1.58 16 37 H 0.11 3.55 7.88 -2.91 -0.02 3.53 16 38 H 0.15 1.81 5.38 -2.91 -0.02 1.80 16 39 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -76.57 360.19 6.01 -70.56 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.04 Total: 11.36 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 4.87 Total: -10.42 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.78 Total: -84.05 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.07 Total: -33.18 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -76.57 6.01 -70.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293768593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.483 kcal (2) G-P(sol) polarization free energy of solvation -76.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds