Wall clock time and date at job start Tue Mar 31 2020 12:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.38861 * 123.64857 * 21.76485 * 3 2 1 5 5 C 1.33297 * 115.05550 * 179.97438 * 4 3 2 6 6 S 1.70515 * 111.42480 * 359.97438 * 5 4 3 7 7 C 1.38146 * 123.64099 * 201.72019 * 3 2 1 8 8 C 1.46729 * 125.50001 * 0.02562 * 7 3 2 9 9 O 1.21674 * 119.99782 * 0.02562 * 8 7 3 10 10 N 1.34778 * 119.99842 * 180.02562 * 8 7 3 11 11 C 1.46495 * 119.99512 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46993 * 179.97438 * 11 10 8 13 13 C 1.53042 * 109.45834 * 295.02777 * 12 11 10 14 14 C 1.53188 * 109.31263 * 178.60052 * 13 12 11 15 15 N 1.46934 * 108.76686 * 54.65155 * 14 13 12 16 16 C 1.36935 * 120.62781 * 126.40266 * 15 14 13 17 17 H 1.07993 * 120.00620 * 331.83112 * 16 15 14 18 18 C 1.38814 * 119.99786 * 151.82983 * 16 15 14 19 19 N 1.31623 * 119.99674 * 343.07383 * 18 16 15 20 20 Si 1.86796 * 120.00197 * 163.07475 * 18 16 15 21 21 H 1.48504 * 109.46985 * 89.99727 * 20 18 16 22 22 H 1.48493 * 109.47259 * 209.99872 * 20 18 16 23 23 H 1.48501 * 109.47164 * 330.00354 * 20 18 16 24 24 C 1.46922 * 118.73979 * 306.38950 * 15 14 13 25 25 C 1.53034 * 109.46234 * 174.97154 * 12 11 10 26 26 H 1.07999 * 122.46838 * 359.97438 * 4 3 2 27 27 H 1.07992 * 124.28373 * 180.26548 * 5 4 3 28 28 H 0.96993 * 120.00145 * 359.97438 * 10 8 7 29 29 H 1.09002 * 109.47117 * 299.99374 * 11 10 8 30 30 H 1.09001 * 109.47638 * 60.00144 * 11 10 8 31 31 H 1.08996 * 109.45892 * 54.99763 * 12 11 10 32 32 H 1.09002 * 109.49379 * 298.56382 * 13 12 11 33 33 H 1.08997 * 109.49826 * 58.66080 * 13 12 11 34 34 H 1.09006 * 109.59864 * 294.86599 * 14 13 12 35 35 H 1.09003 * 109.70387 * 174.50122 * 14 13 12 36 36 H 0.97000 * 119.99582 * 180.02562 * 19 18 16 37 37 H 1.09008 * 109.58443 * 293.82023 * 24 15 14 38 38 H 1.08996 * 109.70641 * 173.46470 * 24 15 14 39 39 H 1.09001 * 109.49674 * 301.33522 * 25 12 11 40 40 H 1.09004 * 109.50240 * 61.43038 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3379 -1.0726 -0.4286 5 6 4.6558 -0.8868 -0.3553 6 16 5.0338 0.6579 0.2600 7 6 3.3328 1.0694 0.4256 8 6 2.8098 2.3428 0.9335 9 8 1.6084 2.5214 1.0060 10 7 3.6601 3.3145 1.3198 11 6 3.1379 4.5855 1.8275 12 6 4.3038 5.5061 2.1936 13 6 5.0888 4.8964 3.3574 14 6 6.2755 5.8032 3.6983 15 7 5.7750 7.1608 3.9538 16 6 6.0876 7.8121 5.1171 17 1 6.2884 7.2470 6.0152 18 6 6.1463 9.1987 5.1419 19 7 6.2353 9.8739 4.0155 20 14 6.0992 10.1066 6.7738 21 1 7.4835 10.2866 7.2803 22 1 5.4653 11.4357 6.5826 23 1 5.3114 9.3190 7.7558 24 6 4.9330 7.8063 2.9375 25 6 3.7615 6.8768 2.6049 26 1 2.9010 -1.9900 -0.7944 27 1 5.3910 -1.6199 -0.6526 28 1 4.6178 3.1719 1.2624 29 1 2.5272 5.0601 1.0594 30 1 2.5294 4.4008 2.7128 31 1 4.9615 5.6195 1.3319 32 1 4.4381 4.8060 4.2272 33 1 5.4549 3.9102 3.0721 34 1 6.9732 5.8226 2.8609 35 1 6.7819 5.4271 4.5872 36 1 6.2768 10.8428 4.0329 37 1 5.5211 7.9890 2.0381 38 1 4.5513 8.7517 3.3228 39 1 3.1829 7.3003 1.7839 40 1 3.1235 6.7676 3.4819 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330926570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:39 Heat of formation + Delta-G solvation = 42.148672 kcal Electronic energy + Delta-G solvation = -23428.401867 eV Core-core repulsion = 19949.377805 eV Total energy + Delta-G solvation = -3479.024062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.19299 -38.63697 -37.72739 -36.12701 -35.08717 -33.00256 -31.12709 -30.46076 -29.74193 -27.44119 -25.91849 -24.00454 -22.40470 -21.78691 -21.47282 -21.04325 -19.42564 -18.82054 -17.55349 -16.79465 -16.15768 -15.65310 -15.60329 -15.03783 -14.83225 -14.45318 -14.02558 -13.91382 -13.68667 -13.59374 -13.50199 -13.19707 -13.04513 -12.78549 -12.46809 -12.40532 -12.33953 -11.94250 -11.59057 -11.38415 -11.02442 -10.72976 -10.56405 -10.40169 -10.27295 -10.24033 -9.93810 -9.61585 -9.51867 -9.49560 -9.16837 -9.12518 -8.48955 -6.69342 -5.81357 -3.23666 -0.26470 0.77616 1.22051 1.45394 2.58248 2.68315 2.86810 3.31787 3.35979 3.43512 3.45883 3.68551 4.36511 4.48017 4.60740 4.63389 5.01633 5.15146 5.20926 5.31129 5.38320 5.46603 5.51945 5.55901 5.78926 5.85199 5.97462 6.05163 6.24898 6.27558 6.39020 6.55773 6.63640 6.71059 6.76653 6.93336 7.21636 7.33921 7.34622 7.63221 7.77600 7.89438 8.43142 9.19351 9.82828 10.39207 11.27253 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027112 B = 0.002537 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.522536 B =11033.366043 C =11623.948940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.270 3.730 3 C 0.031 3.969 4 C -0.114 4.114 5 C -0.235 4.235 6 S 0.272 5.728 7 C -0.222 4.222 8 C 0.578 3.422 9 O -0.518 6.518 10 N -0.714 5.714 11 C 0.123 3.877 12 C -0.091 4.091 13 C -0.128 4.128 14 C 0.146 3.854 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.172 3.828 25 C -0.133 4.133 26 H 0.156 0.844 27 H 0.181 0.819 28 H 0.399 0.601 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.018 0.982 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 -20.980 -10.466 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.047 4.047 3 C 0.011 3.989 4 C -0.145 4.145 5 C -0.372 4.372 6 S 0.540 5.460 7 C -0.347 4.347 8 C 0.362 3.638 9 O -0.395 6.395 10 N -0.365 5.365 11 C 0.000 4.000 12 C -0.110 4.110 13 C -0.168 4.168 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.173 4.173 26 H 0.173 0.827 27 H 0.198 0.802 28 H 0.234 0.766 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.682 -19.883 -10.114 22.318 hybrid contribution -0.333 -0.423 0.391 0.665 sum -1.015 -20.306 -9.723 22.536 Atomic orbital electron populations 1.81184 1.11654 1.07073 1.06883 1.24620 0.91552 0.93950 0.94611 1.15303 0.86197 0.94043 1.03325 1.19804 0.92249 0.99552 1.02937 1.25155 1.00412 1.03465 1.08204 1.83282 1.00756 1.06696 1.55256 1.25211 0.98579 0.99473 1.11443 1.16916 0.86467 0.82039 0.78339 1.90898 1.14339 1.80058 1.54183 1.45957 1.09545 1.15966 1.65078 1.21706 0.97227 0.81866 0.99160 1.21337 0.95384 0.95593 0.98675 1.22098 0.99406 0.97589 0.97690 1.20886 0.92615 0.86506 0.98095 1.44045 1.55691 1.12556 1.19212 1.19162 1.42773 0.89077 0.87232 0.91773 1.25041 1.00619 0.97274 0.96689 1.70025 1.53389 1.06449 1.24882 0.86321 0.77769 0.79213 0.83626 1.21401 1.21546 1.20485 1.20757 0.88440 0.95021 0.91172 1.22183 1.00478 0.94587 1.00028 0.82665 0.80205 0.76630 0.91243 0.91075 0.91126 0.92021 0.93541 0.96566 0.92819 0.93622 0.96415 0.89382 0.92975 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.96 18.54 41.83 0.78 -5.19 16 2 C 0.27 3.46 13.90 -22.47 -0.31 3.15 16 3 C 0.03 0.29 5.74 -107.77 -0.62 -0.33 16 4 C -0.11 -0.67 9.99 -41.08 -0.41 -1.08 16 5 C -0.23 -0.98 10.87 29.01 0.32 -0.66 16 6 S 0.27 1.45 22.14 -107.50 -2.38 -0.93 16 7 C -0.22 -2.13 6.50 -36.19 -0.24 -2.36 16 8 C 0.58 7.40 7.78 -12.83 -0.10 7.30 16 9 O -0.52 -8.77 15.36 5.21 0.08 -8.69 16 10 N -0.71 -8.13 5.27 -61.60 -0.32 -8.45 16 11 C 0.12 1.64 5.06 -4.04 -0.02 1.62 16 12 C -0.09 -1.34 2.19 -90.58 -0.20 -1.54 16 13 C -0.13 -1.97 5.25 -26.61 -0.14 -2.11 16 14 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 15 N -0.59 -14.21 2.99 -172.32 -0.52 -14.72 16 16 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 17 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 20 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 25 C -0.13 -2.36 5.36 -26.62 -0.14 -2.50 16 26 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 27 H 0.18 0.22 8.06 -52.49 -0.42 -0.20 16 28 H 0.40 3.59 6.77 -40.82 -0.28 3.32 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.57 7.15 -51.93 -0.37 0.19 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -33.19 350.71 -8.78 -41.96 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -5.15 Total: -1.75 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.14 Total: 1.24 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.56 Total: -53.45 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.38 Total: -0.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.19 -8.78 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330926570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.110 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds