Wall clock time and date at job start Tue Mar 31 2020 12:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46844 * 239.99755 * 3 2 1 5 5 H 1.48498 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46981 * 119.99765 * 3 2 1 7 7 C 1.37874 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45864 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31046 * 178.62817 * 10 9 7 12 12 N 1.46925 * 108.77662 * 54.63235 * 11 10 9 13 13 C 1.34777 * 120.62933 * 126.37171 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27723 * 13 12 11 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 12 17 17 C 1.34334 * 125.80469 * 125.00059 * 16 15 13 18 18 N 1.38928 * 107.12082 * 179.97438 * 17 16 15 19 19 C 1.37487 * 139.53403 * 180.02562 * 18 17 16 20 20 C 1.30910 * 116.31942 * 179.97438 * 19 18 17 21 21 S 1.75779 * 109.81952 * 359.97438 * 20 19 18 22 22 C 1.35143 * 106.53043 * 359.97438 * 18 17 16 23 23 N 1.32359 * 108.82274 * 359.75839 * 22 18 17 24 24 C 1.46931 * 118.73924 * 306.64212 * 12 11 10 25 25 C 1.52760 * 109.00543 * 53.31068 * 24 12 11 26 26 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.45607 * 299.96933 * 9 7 2 28 28 H 1.08994 * 109.49700 * 58.67777 * 10 9 7 29 29 H 1.08997 * 109.52427 * 298.59270 * 10 9 7 30 30 H 1.09005 * 109.58240 * 294.84926 * 11 10 9 31 31 H 1.08995 * 109.70318 * 174.49170 * 11 10 9 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 34 34 H 1.08002 * 126.43877 * 359.97438 * 17 16 15 35 35 H 1.07999 * 121.83717 * 359.96862 * 19 18 17 36 36 H 1.07999 * 125.09129 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.58191 * 173.14261 * 24 12 11 38 38 H 1.09000 * 109.58404 * 293.56973 * 24 12 11 39 39 H 1.09004 * 109.56227 * 185.55021 * 25 24 12 40 40 H 1.09000 * 109.38786 * 65.51167 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4767 -4.9866 0.0351 12 7 0.5224 -5.0087 -1.0818 13 6 0.5122 -6.0344 -1.9560 14 8 1.2960 -6.9506 -1.8251 15 6 -0.4686 -6.0395 -3.1002 16 6 -0.2695 -7.2837 -3.9269 17 6 -1.2178 -8.1853 -4.2310 18 7 -0.6143 -9.1683 -5.0053 19 6 -0.9385 -10.3403 -5.6468 20 6 0.0342 -10.9416 -6.2839 21 16 1.5199 -10.0179 -6.1119 22 6 0.6829 -8.8127 -5.1356 23 7 0.8809 -7.6750 -4.4887 24 6 -0.4165 -3.8884 -1.2311 25 6 0.3701 -2.5790 -1.2484 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5567 0.8907 28 1 2.8881 -3.5915 0.8782 29 1 2.8562 -3.6195 -0.9015 30 1 0.9370 -5.0712 0.9785 31 1 2.1735 -5.8189 -0.0631 32 1 -1.4852 -6.0231 -2.7074 33 1 -0.3053 -5.1597 -3.7226 34 1 -2.2546 -8.1521 -3.9301 35 1 -1.9405 -10.7428 -5.6261 36 1 -0.0616 -11.8666 -6.8330 37 1 -0.9666 -3.9949 -2.1660 38 1 -1.1135 -3.8817 -0.3932 39 1 -0.3224 -1.7373 -1.2596 40 1 0.9978 -2.5457 -2.1389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334231107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:02 Heat of formation + Delta-G solvation = 63.262321 kcal Electronic energy + Delta-G solvation = -23836.394348 eV Core-core repulsion = 20358.285843 eV Total energy + Delta-G solvation = -3478.108505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.74216 -39.53688 -37.08141 -36.40593 -33.45582 -32.08322 -30.94737 -30.76544 -29.98217 -27.55594 -25.92104 -24.22612 -23.01119 -22.29651 -21.03022 -20.92451 -19.53263 -18.52668 -18.11216 -16.92871 -16.22124 -16.15127 -15.85180 -15.43642 -15.09977 -14.67566 -14.50792 -14.39177 -13.64799 -13.28864 -13.14763 -12.92889 -12.76292 -12.57918 -12.38451 -11.97450 -11.63781 -11.52281 -11.50012 -11.24519 -10.90223 -10.64135 -10.62913 -10.33844 -10.12307 -10.05229 -9.60209 -9.32909 -9.12617 -8.94242 -8.80585 -8.34865 -7.90958 -7.85459 -6.00944 -4.06596 0.69776 0.72233 1.41365 2.04025 2.36759 2.78367 3.12389 3.31948 3.36179 3.39859 3.64095 4.21354 4.38074 4.43160 4.71398 4.84303 5.02821 5.10251 5.19216 5.28567 5.48638 5.59506 5.67718 5.87701 5.89029 6.01955 6.12981 6.22726 6.32799 6.39220 6.52494 6.67631 6.72330 6.97191 7.09608 7.21601 7.32187 7.69379 7.71084 7.95669 8.02113 8.07464 8.43446 8.71275 8.96555 9.58273 11.04546 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.030467 B = 0.002478 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.812683 B =11298.668527 C =11361.007515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.604 5.604 13 C 0.515 3.485 14 O -0.539 6.539 15 C -0.058 4.058 16 C 0.074 3.926 17 C -0.052 4.052 18 N -0.411 5.411 19 C 0.054 3.946 20 C -0.230 4.230 21 S 0.181 5.819 22 C 0.134 3.866 23 N -0.423 5.423 24 C 0.103 3.897 25 C -0.126 4.126 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.195 0.805 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 -20.124 -11.939 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.008 4.008 12 N -0.337 5.337 13 C 0.302 3.698 14 O -0.416 6.416 15 C -0.099 4.099 16 C -0.058 4.058 17 C -0.183 4.183 18 N -0.092 5.092 19 C -0.076 4.076 20 C -0.368 4.368 21 S 0.431 5.569 22 C -0.232 4.232 23 N -0.145 5.145 24 C -0.019 4.019 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.201 0.799 35 H 0.197 0.803 36 H 0.212 0.788 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.608 -20.247 -12.261 24.114 hybrid contribution -1.832 0.767 0.430 2.032 sum -6.439 -19.479 -11.832 23.683 Atomic orbital electron populations 1.69825 1.05821 1.26510 1.51050 1.24951 0.94876 0.99004 0.95123 0.86681 0.79640 0.83196 0.78629 1.20337 1.21338 1.20330 1.21185 0.92937 0.90614 1.50160 0.92776 1.18626 0.92654 0.91704 0.93957 1.22002 0.98914 0.94276 1.00957 1.21645 0.91759 0.99621 0.87779 1.48217 1.36439 1.20965 1.28084 1.20174 0.84657 0.82176 0.82820 1.90682 1.40690 1.36174 1.74103 1.20035 1.00436 0.94731 0.94720 1.20075 0.88461 0.97236 1.00023 1.22446 1.00507 0.90994 1.04375 1.43860 1.10149 1.17571 1.37573 1.20350 1.02122 0.87030 0.98098 1.25066 0.95942 1.06812 1.08940 1.84797 1.07011 1.12887 1.52238 1.26233 0.86799 1.01318 1.08844 1.70551 1.25785 1.07490 1.10672 1.21950 0.91726 0.87641 1.00553 1.21950 1.00140 0.94679 0.99658 0.92969 0.95500 0.92272 0.92931 0.92424 0.90461 0.87394 0.87073 0.79885 0.80305 0.78840 0.91499 0.91961 0.87752 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 11.30 55.43 0.63 -23.80 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 10 C -0.12 -2.61 5.30 -26.61 -0.14 -2.75 16 11 C 0.11 2.17 6.44 -3.71 -0.02 2.15 16 12 N -0.60 -11.07 2.98 -173.03 -0.52 -11.58 16 13 C 0.51 9.42 7.69 -10.98 -0.08 9.34 16 14 O -0.54 -11.81 14.99 5.55 0.08 -11.73 16 15 C -0.06 -0.82 4.61 -29.03 -0.13 -0.95 16 16 C 0.07 1.12 5.83 -83.08 -0.48 0.64 16 17 C -0.05 -0.62 11.91 -15.71 -0.19 -0.81 16 18 N -0.41 -4.90 3.19 -63.77 -0.20 -5.10 16 19 C 0.05 0.41 11.26 -16.71 -0.19 0.22 16 20 C -0.23 -1.49 11.11 29.04 0.32 -1.17 16 21 S 0.18 1.82 23.37 -107.50 -2.51 -0.69 16 22 C 0.13 1.96 8.92 -88.71 -0.79 1.17 16 23 N -0.42 -7.52 10.70 -9.77 -0.10 -7.62 16 24 C 0.10 1.80 6.32 -3.93 -0.02 1.78 16 25 C -0.13 -2.76 5.14 -26.83 -0.14 -2.90 16 26 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 32 H 0.11 1.12 7.92 -51.93 -0.41 0.71 16 33 H 0.11 1.48 7.68 -51.93 -0.40 1.08 16 34 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.18 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.19 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.07 0.95 5.93 -51.93 -0.31 0.65 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -34.43 341.48 -10.10 -44.52 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.14 Total: -0.37 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.45 Total: -4.76 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.20 Total: -48.11 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.51 Total: -0.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.43 -10.10 -44.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334231107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.783 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds