Wall clock time and date at job start Tue Mar 31 2020 12:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34218 * 125.76801 * 2 1 4 4 N 1.39123 * 107.11508 * 180.02562 * 3 2 1 5 5 C 1.36236 * 139.29784 * 180.37320 * 4 3 2 6 6 C 1.33006 * 116.10938 * 180.11063 * 5 4 3 7 7 C 1.46870 * 125.22797 * 179.77803 * 6 5 4 8 8 O 1.21668 * 119.99480 * 359.72945 * 7 6 5 9 9 N 1.34775 * 120.00285 * 179.72180 * 7 6 5 10 10 C 1.46500 * 120.00126 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.43352 * 323.90800 * 10 9 7 12 12 C 1.54261 * 110.48571 * 86.45371 * 10 9 7 13 13 C 1.53882 * 106.59772 * 142.42173 * 12 10 9 14 14 C 1.54262 * 106.59796 * 359.97438 * 13 12 10 15 15 H 1.08999 * 110.48550 * 95.20060 * 14 13 12 16 16 C 1.50695 * 110.48866 * 217.71436 * 14 13 12 17 17 H 1.08004 * 120.00546 * 118.82279 * 16 14 13 18 18 C 1.37885 * 119.99721 * 298.54531 * 16 14 13 19 19 N 1.31516 * 119.99913 * 179.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48493 * 109.47326 * 90.00142 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99892 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99603 * 20 18 16 24 24 C 1.54891 * 110.59597 * 201.29593 * 10 9 7 25 25 S 1.75805 * 109.54401 * 359.52059 * 6 5 4 26 26 C 1.35442 * 106.45295 * 359.97438 * 4 3 2 27 27 N 1.32274 * 108.78007 * 359.97438 * 26 4 3 28 28 H 1.09004 * 109.46815 * 90.00321 * 1 2 3 29 29 H 1.09002 * 109.47175 * 210.00024 * 1 2 3 30 30 H 1.09000 * 109.47117 * 330.00399 * 1 2 3 31 31 H 1.08003 * 126.44219 * 359.97438 * 3 2 1 32 32 H 1.07997 * 121.94305 * 359.89906 * 5 4 3 33 33 H 0.97004 * 119.99690 * 359.97438 * 9 7 6 34 34 H 1.08999 * 110.03736 * 23.14063 * 12 10 9 35 35 H 1.08997 * 110.07542 * 261.72522 * 12 10 9 36 36 H 1.08999 * 110.03005 * 240.71542 * 13 12 10 37 37 H 1.08997 * 110.03260 * 119.28524 * 13 12 10 38 38 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.75619 * 85.01105 * 24 10 9 40 40 H 1.08995 * 110.75895 * 321.63508 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2916 1.0890 0.0000 4 7 3.6097 0.6441 -0.0006 5 6 4.8725 1.1555 0.0049 6 6 5.8633 0.2683 -0.0014 7 6 7.2948 0.5969 -0.0020 8 8 7.6518 1.7601 -0.0013 9 7 8.2128 -0.3898 -0.0030 10 6 9.6407 -0.0619 -0.0030 11 1 9.8267 0.8282 -0.6039 12 6 10.1471 0.1447 1.4394 13 6 11.5649 -0.4506 1.4970 14 6 11.8703 -0.9987 0.0877 15 1 12.4184 -0.2608 -0.4981 16 6 12.6520 -2.2837 0.1796 17 1 12.2397 -3.1968 -0.2239 18 6 13.8963 -2.2927 0.7737 19 7 14.5784 -3.4143 0.8543 20 14 14.6125 -0.7122 1.4652 21 1 14.2091 -0.5664 2.8869 22 1 16.0940 -0.7584 1.3733 23 1 14.1040 0.4446 0.6852 24 6 10.4740 -1.2561 -0.5308 25 16 5.1964 -1.3583 -0.0016 26 6 3.5578 -0.7094 -0.0003 27 7 2.2900 -1.0868 0.0009 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9616 2.1174 -0.0004 32 1 5.0580 2.2194 0.0104 33 1 7.9281 -1.3171 -0.0031 34 1 9.4954 -0.3746 2.1420 35 1 10.1788 1.2082 1.6761 36 1 11.6012 -1.2587 2.2275 37 1 12.2848 0.3243 1.7607 38 1 15.4535 -3.4207 1.2726 39 1 10.5247 -1.2406 -1.6194 40 1 10.0629 -2.2010 -0.1756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334533468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:33 Heat of formation + Delta-G solvation = 53.614509 kcal Electronic energy + Delta-G solvation = -23263.253881 eV Core-core repulsion = 19784.727015 eV Total energy + Delta-G solvation = -3478.526866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.10755 -40.03846 -37.69356 -36.77951 -34.06326 -32.29034 -31.74716 -31.24359 -28.67719 -28.14619 -27.10927 -24.95800 -23.66727 -22.34420 -21.26678 -20.39969 -20.00735 -19.18248 -18.87738 -17.11583 -16.85012 -16.64545 -16.31950 -15.92226 -15.29850 -14.97630 -14.75332 -14.48701 -13.99764 -13.83103 -13.66614 -13.31725 -12.94078 -12.73588 -12.61890 -12.41601 -11.92378 -11.78235 -11.73241 -11.20271 -10.99188 -10.91396 -10.58600 -10.56136 -10.36365 -10.20438 -10.01063 -9.83123 -9.56721 -9.20918 -9.03822 -8.95406 -8.58386 -8.10749 -6.10805 -4.10362 0.09702 0.39853 1.10360 1.60083 1.96268 2.38337 2.84524 3.04573 3.27510 3.37051 3.38002 3.92907 4.15876 4.39350 4.45751 4.61311 4.80239 4.91203 5.12166 5.23126 5.24842 5.28332 5.35913 5.44256 5.47561 5.60643 5.93040 5.99602 6.06744 6.17643 6.32407 6.33346 6.36941 6.45282 6.58019 6.78820 6.85793 7.03995 7.26502 7.32939 7.46013 7.72897 7.94035 8.47537 8.92155 9.51768 11.02186 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.037894 B = 0.002461 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.721128 B =11373.428589 C =11846.477209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.049 3.951 3 C -0.055 4.055 4 N -0.406 5.406 5 C 0.127 3.873 6 C -0.249 4.249 7 C 0.597 3.403 8 O -0.525 6.525 9 N -0.705 5.705 10 C 0.135 3.865 11 H 0.093 0.907 12 C -0.129 4.129 13 C -0.132 4.132 14 C 0.015 3.985 15 H 0.035 0.965 16 C -0.511 4.511 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.264 1.264 24 C -0.110 4.110 25 S 0.225 5.775 26 C 0.143 3.857 27 N -0.454 5.454 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.187 0.813 32 H 0.196 0.804 33 H 0.399 0.601 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.062 0.938 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.171 9.107 -1.449 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 C -0.185 4.185 4 N -0.084 5.084 5 C -0.008 4.008 6 C -0.371 4.371 7 C 0.380 3.620 8 O -0.403 6.403 9 N -0.354 5.354 10 C 0.032 3.968 11 H 0.111 0.889 12 C -0.168 4.168 13 C -0.171 4.171 14 C -0.004 4.004 15 H 0.053 0.947 16 C -0.549 4.549 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.189 1.189 24 C -0.148 4.148 25 S 0.475 5.525 26 C -0.223 4.223 27 N -0.178 5.178 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.204 0.796 32 H 0.212 0.788 33 H 0.233 0.767 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.432 7.803 -1.388 25.686 hybrid contribution 0.048 2.529 0.540 2.586 sum -24.384 10.332 -0.848 26.496 Atomic orbital electron populations 1.20149 0.86123 1.03471 1.03031 1.20888 0.96972 0.87493 1.02688 1.22646 0.78520 1.01275 1.16098 1.43652 1.05826 1.07930 1.50984 1.20559 0.80084 1.01676 0.98488 1.23645 0.98593 0.97403 1.17501 1.16525 0.82345 0.85917 0.77171 1.90853 1.80356 1.18722 1.50396 1.46065 1.07282 1.08589 1.73499 1.22240 0.76481 1.00282 0.97837 0.88934 1.22514 0.98137 1.00553 0.95585 1.22659 0.93501 0.99317 1.01582 1.19896 0.91982 0.97319 0.91189 0.94734 1.20973 1.01372 0.94042 1.38537 0.90751 1.24999 0.96733 0.95844 0.95516 1.69901 1.13265 1.26139 1.44575 0.86925 0.77650 0.84635 0.79941 1.20346 1.22127 1.18905 1.22716 0.96661 0.95635 0.99754 1.84907 0.86046 1.00752 1.80754 1.26503 1.00703 0.84129 1.10923 1.70530 0.96395 1.29531 1.21355 0.90538 0.90419 0.90556 0.79603 0.78763 0.76670 0.92101 0.92334 0.91081 0.93659 0.92655 0.91904 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.41 36.01 0.38 -0.03 16 2 C 0.05 0.48 7.05 -83.08 -0.59 -0.10 16 3 C -0.05 -0.47 11.92 -15.65 -0.19 -0.66 16 4 N -0.41 -4.27 3.15 -63.52 -0.20 -4.47 16 5 C 0.13 1.26 10.94 -17.41 -0.19 1.07 16 6 C -0.25 -2.74 6.34 -37.91 -0.24 -2.98 16 7 C 0.60 7.97 7.78 -12.77 -0.10 7.87 16 8 O -0.53 -8.49 16.46 5.22 0.09 -8.40 16 9 N -0.71 -9.27 5.11 -53.45 -0.27 -9.54 16 10 C 0.13 2.12 3.15 -66.27 -0.21 1.91 16 11 H 0.09 1.51 7.66 -51.93 -0.40 1.11 16 12 C -0.13 -2.17 6.53 -25.61 -0.17 -2.34 16 13 C -0.13 -2.68 4.65 -25.61 -0.12 -2.79 16 14 C 0.02 0.34 2.29 -90.13 -0.21 0.13 16 15 H 0.03 0.78 7.31 -51.93 -0.38 0.40 16 16 C -0.51 -13.60 8.98 -34.44 -0.31 -13.91 16 17 H 0.07 2.13 8.02 -52.48 -0.42 1.71 16 18 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 19 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 20 Si 0.88 21.23 24.67 -169.99 -4.19 17.03 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.26 -6.10 6.36 56.52 0.36 -5.74 16 24 C -0.11 -1.93 5.89 -24.75 -0.15 -2.07 16 25 S 0.22 2.30 22.41 -107.50 -2.41 -0.10 16 26 C 0.14 1.72 8.92 -88.51 -0.79 0.93 16 27 N -0.45 -5.76 11.32 -9.73 -0.11 -5.87 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.19 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.20 1.57 7.97 -52.49 -0.42 1.15 16 33 H 0.40 4.47 7.64 -40.82 -0.31 4.15 16 34 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.52 7.82 -51.93 -0.41 1.11 16 37 H 0.04 0.93 5.73 -51.93 -0.30 0.63 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -32.54 343.16 -9.30 -41.84 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.18 Total: 1.55 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.97 Total: -11.11 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.19 Total: -45.98 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.19 Total: 17.03 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.41 Total: -0.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.54 -9.30 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334533468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.458 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds