Wall clock time and date at job start Tue Mar 31 2020 12:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34218 * 125.76801 * 2 1 4 4 N 1.39123 * 107.11508 * 180.02562 * 3 2 1 5 5 C 1.36236 * 139.29784 * 180.37320 * 4 3 2 6 6 C 1.33006 * 116.10938 * 180.11063 * 5 4 3 7 7 C 1.46870 * 125.22797 * 179.77803 * 6 5 4 8 8 O 1.21668 * 119.99480 * 359.72945 * 7 6 5 9 9 N 1.34775 * 120.00285 * 179.72180 * 7 6 5 10 10 C 1.46500 * 120.00126 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.43352 * 323.90800 * 10 9 7 12 12 C 1.54261 * 110.48571 * 86.45371 * 10 9 7 13 13 C 1.53882 * 106.59772 * 142.42173 * 12 10 9 14 14 C 1.54262 * 106.59796 * 359.97438 * 13 12 10 15 15 H 1.08999 * 110.48550 * 95.20060 * 14 13 12 16 16 C 1.50695 * 110.48866 * 217.71436 * 14 13 12 17 17 H 1.08004 * 120.00546 * 118.82279 * 16 14 13 18 18 C 1.37885 * 119.99721 * 298.54531 * 16 14 13 19 19 N 1.31516 * 119.99913 * 179.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48493 * 109.47326 * 90.00142 * 20 18 16 22 22 H 1.48506 * 109.46545 * 209.99892 * 20 18 16 23 23 H 1.48498 * 109.47210 * 329.99603 * 20 18 16 24 24 C 1.54891 * 110.59597 * 201.29593 * 10 9 7 25 25 S 1.75805 * 109.54401 * 359.52059 * 6 5 4 26 26 C 1.35442 * 106.45295 * 359.97438 * 4 3 2 27 27 N 1.32274 * 108.78007 * 359.97438 * 26 4 3 28 28 H 1.09004 * 109.46815 * 90.00321 * 1 2 3 29 29 H 1.09002 * 109.47175 * 210.00024 * 1 2 3 30 30 H 1.09000 * 109.47117 * 330.00399 * 1 2 3 31 31 H 1.08003 * 126.44219 * 359.97438 * 3 2 1 32 32 H 1.07997 * 121.94305 * 359.89906 * 5 4 3 33 33 H 0.97004 * 119.99690 * 359.97438 * 9 7 6 34 34 H 1.08999 * 110.03736 * 23.14063 * 12 10 9 35 35 H 1.08997 * 110.07542 * 261.72522 * 12 10 9 36 36 H 1.08999 * 110.03005 * 240.71542 * 13 12 10 37 37 H 1.08997 * 110.03260 * 119.28524 * 13 12 10 38 38 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.75619 * 85.01105 * 24 10 9 40 40 H 1.08995 * 110.75895 * 321.63508 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2916 1.0890 0.0000 4 7 3.6097 0.6441 -0.0006 5 6 4.8725 1.1555 0.0049 6 6 5.8633 0.2683 -0.0014 7 6 7.2948 0.5969 -0.0020 8 8 7.6518 1.7601 -0.0013 9 7 8.2128 -0.3898 -0.0030 10 6 9.6407 -0.0619 -0.0030 11 1 9.8267 0.8282 -0.6039 12 6 10.1471 0.1447 1.4394 13 6 11.5649 -0.4506 1.4970 14 6 11.8703 -0.9987 0.0877 15 1 12.4184 -0.2608 -0.4981 16 6 12.6520 -2.2837 0.1796 17 1 12.2397 -3.1968 -0.2239 18 6 13.8963 -2.2927 0.7737 19 7 14.5784 -3.4143 0.8543 20 14 14.6125 -0.7122 1.4652 21 1 14.2091 -0.5664 2.8869 22 1 16.0940 -0.7584 1.3733 23 1 14.1040 0.4446 0.6852 24 6 10.4740 -1.2561 -0.5308 25 16 5.1964 -1.3583 -0.0016 26 6 3.5578 -0.7094 -0.0003 27 7 2.2900 -1.0868 0.0009 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9616 2.1174 -0.0004 32 1 5.0580 2.2194 0.0104 33 1 7.9281 -1.3171 -0.0031 34 1 9.4954 -0.3746 2.1420 35 1 10.1788 1.2082 1.6761 36 1 11.6012 -1.2587 2.2275 37 1 12.2848 0.3243 1.7607 38 1 15.4535 -3.4207 1.2726 39 1 10.5247 -1.2406 -1.6194 40 1 10.0629 -2.2010 -0.1756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334533468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:33 Heat of formation + Delta-G solvation = 33.217181 kcal Electronic energy + Delta-G solvation = -23264.138376 eV Core-core repulsion = 19784.727015 eV Total energy + Delta-G solvation = -3479.411360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.85782 -41.15311 -39.03045 -37.66395 -35.46666 -34.13315 -32.49827 -32.03816 -30.28919 -29.42972 -27.97044 -25.98553 -25.24169 -23.34678 -21.99390 -21.64514 -21.27088 -20.59555 -19.72285 -18.74187 -18.00818 -17.45346 -17.31555 -16.98843 -16.73604 -16.27557 -15.86497 -15.60576 -15.31364 -14.81237 -14.60724 -14.28642 -14.14841 -14.02424 -13.97498 -13.44385 -13.16584 -12.80429 -12.69075 -12.53304 -12.50333 -12.26218 -11.90266 -11.72273 -11.69720 -11.55979 -11.37816 -11.35776 -11.27192 -10.94952 -10.70147 -10.23321 -9.87094 -8.85892 -8.26310 -6.28968 -0.71055 -0.38274 0.32400 0.81504 1.18728 1.35692 1.38998 1.48194 1.64538 1.86608 2.03780 2.36601 3.09362 3.16351 3.48977 3.53529 3.78782 3.89269 4.00686 4.06771 4.14819 4.31020 4.57474 4.62199 4.68113 4.79431 4.84967 4.86063 4.87160 4.92222 5.00106 5.00972 5.12681 5.20474 5.42827 5.43691 5.48458 5.65986 5.67031 5.80265 6.28130 6.34470 6.53224 6.77915 6.90256 7.36512 8.90121 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.037894 B = 0.002461 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.721128 B =11373.428589 C =11846.477209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.029 3.971 3 C -0.045 4.045 4 N -0.409 5.409 5 C 0.143 3.857 6 C -0.263 4.263 7 C 0.605 3.395 8 O -0.553 6.553 9 N -0.701 5.701 10 C 0.149 3.851 11 H 0.093 0.907 12 C -0.121 4.121 13 C -0.130 4.130 14 C 0.006 3.994 15 H 0.033 0.967 16 C -0.509 4.509 17 H 0.039 0.961 18 C 0.012 3.988 19 N -0.951 5.951 20 Si 0.938 3.062 21 H -0.267 1.267 22 H -0.299 1.299 23 H -0.244 1.244 24 C -0.102 4.102 25 S 0.235 5.765 26 C 0.115 3.885 27 N -0.487 5.487 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.226 0.774 32 H 0.216 0.784 33 H 0.408 0.592 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.395 11.824 -1.247 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C -0.175 4.175 4 N -0.088 5.088 5 C 0.008 3.992 6 C -0.385 4.385 7 C 0.390 3.610 8 O -0.433 6.433 9 N -0.351 5.351 10 C 0.045 3.955 11 H 0.111 0.889 12 C -0.160 4.160 13 C -0.168 4.168 14 C -0.013 4.013 15 H 0.051 0.949 16 C -0.547 4.547 17 H 0.057 0.943 18 C -0.185 4.185 19 N -0.592 5.592 20 Si 0.764 3.236 21 H -0.193 1.193 22 H -0.226 1.226 23 H -0.168 1.168 24 C -0.140 4.140 25 S 0.486 5.514 26 C -0.251 4.251 27 N -0.212 5.212 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.243 0.757 32 H 0.233 0.767 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.707 10.510 -1.193 28.725 hybrid contribution 0.604 1.611 0.424 1.772 sum -26.103 12.121 -0.769 28.790 Atomic orbital electron populations 1.20273 0.83784 1.04467 1.03944 1.21579 0.98572 0.87118 1.02658 1.23370 0.77448 1.02802 1.13881 1.43858 1.06545 1.07530 1.50861 1.20837 0.79650 1.02400 0.96359 1.23313 0.97537 0.98123 1.19539 1.16615 0.83000 0.85272 0.76127 1.90840 1.81011 1.19717 1.51709 1.45877 1.06296 1.09333 1.73558 1.21888 0.77614 0.99068 0.96958 0.88904 1.22439 0.96017 1.00995 0.96557 1.22505 0.95903 0.98817 0.99595 1.19887 0.93630 0.94822 0.92953 0.94898 1.21304 1.01591 0.94919 1.36868 0.94318 1.25837 0.97420 0.98958 0.96301 1.70051 1.13911 1.28609 1.46601 0.85971 0.76453 0.81260 0.79887 1.19277 1.22596 1.16801 1.22571 0.94651 0.96614 1.00194 1.84783 0.85543 1.00238 1.80849 1.26726 1.01018 0.85137 1.12174 1.70492 0.97192 1.31401 1.22155 0.89584 0.91110 0.87873 0.75734 0.76705 0.75520 0.90962 0.91311 0.92812 0.93616 0.92747 0.90960 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.41 71.24 0.74 0.11 16 2 C 0.03 0.52 7.05 41.32 0.29 0.81 16 3 C -0.05 -0.65 11.92 82.62 0.99 0.33 16 4 N -0.41 -7.69 3.15 -354.88 -1.12 -8.80 16 5 C 0.14 2.49 10.94 82.84 0.91 3.40 16 6 C -0.26 -5.29 6.34 23.36 0.15 -5.14 16 7 C 0.60 14.87 7.78 86.50 0.67 15.54 16 8 O -0.55 -16.59 16.46 -4.25 -0.07 -16.66 16 9 N -0.70 -17.03 5.11 -441.24 -2.26 -19.28 16 10 C 0.15 4.36 3.15 46.07 0.15 4.51 16 11 H 0.09 2.80 7.66 -2.39 -0.02 2.78 16 12 C -0.12 -3.79 6.53 31.32 0.20 -3.58 16 13 C -0.13 -5.05 4.65 31.32 0.15 -4.91 16 14 C 0.01 0.27 2.29 -10.47 -0.02 0.25 16 15 H 0.03 1.43 7.31 -2.39 -0.02 1.42 16 16 C -0.51 -27.60 8.98 25.60 0.23 -27.37 16 17 H 0.04 2.31 8.02 -2.91 -0.02 2.29 16 18 C 0.01 0.66 5.46 84.66 0.46 1.12 16 19 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 20 Si 0.94 43.73 24.67 68.60 1.69 45.42 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 23 H -0.24 -10.50 6.36 99.48 0.63 -9.87 16 24 C -0.10 -3.48 5.89 31.88 0.19 -3.29 16 25 S 0.24 4.58 22.41 -56.49 -1.27 3.32 16 26 C 0.11 2.63 8.92 179.61 1.60 4.23 16 27 N -0.49 -11.95 11.32 -184.70 -2.09 -14.04 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.23 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.22 2.76 7.97 -2.91 -0.02 2.74 16 33 H 0.41 8.45 7.64 -92.71 -0.71 7.74 16 34 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 2.26 7.82 -2.39 -0.02 2.24 16 37 H 0.05 1.76 5.73 -2.39 -0.01 1.75 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.39 7.94 -2.39 -0.02 2.38 16 Total: -1.00 -71.74 343.16 2.19 -69.55 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.29 Total: 12.73 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 6.70 Total: -14.01 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -5.16 Total: -100.35 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.07 Total: -16.66 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.69 Total: 45.42 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.27 Total: 3.32 kcal Total: -71.74 2.19 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334533468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.768 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds