Wall clock time and date at job start Tue Mar 31 2020 12:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.63938 * 2 1 4 4 O 1.21283 * 119.99736 * 119.57683 * 3 2 1 5 5 N 1.34771 * 120.00116 * 299.57186 * 3 2 1 6 6 C 1.39266 * 120.00374 * 174.43384 * 5 3 2 7 7 C 1.39473 * 119.83684 * 335.09432 * 6 5 3 8 8 C 1.36364 * 120.18181 * 179.97438 * 7 6 5 9 9 C 1.40901 * 119.84935 * 359.97438 * 8 7 6 10 10 C 1.41145 * 120.15845 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00119 * 34.93385 * 10 9 8 12 12 C 1.39904 * 119.99962 * 214.92699 * 10 9 8 13 13 N 1.30874 * 119.99875 * 355.19417 * 12 10 9 14 14 Si 1.86795 * 119.99923 * 175.19623 * 12 10 9 15 15 H 1.48492 * 109.47283 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47073 * 119.99962 * 14 12 10 17 17 H 1.48506 * 109.46924 * 239.99953 * 14 12 10 18 18 C 1.40842 * 119.68067 * 0.02562 * 9 8 7 19 19 C 1.36477 * 119.81735 * 359.72381 * 18 9 8 20 20 Cl 1.73601 * 119.92652 * 180.29157 * 19 18 9 21 21 C 1.53022 * 109.64431 * 239.57208 * 2 1 3 22 22 C 1.50058 * 110.15164 * 289.54646 * 21 2 1 23 23 C 1.29451 * 124.07463 * 342.86477 * 22 21 2 24 24 C 1.50070 * 124.07405 * 0.49555 * 23 22 21 25 25 C 1.53035 * 110.14055 * 342.83032 * 24 23 22 26 26 H 1.09004 * 109.46879 * 60.00218 * 1 2 3 27 27 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47480 * 300.00657 * 1 2 3 29 29 H 0.97005 * 119.99607 * 354.43328 * 5 3 2 30 30 H 1.08003 * 119.90900 * 0.02562 * 7 6 5 31 31 H 1.07997 * 120.07835 * 179.97438 * 8 7 6 32 32 H 0.97000 * 119.99535 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.09028 * 180.02562 * 18 9 8 34 34 H 1.09002 * 109.35406 * 49.75583 * 21 2 1 35 35 H 1.08998 * 109.35692 * 169.47029 * 21 2 1 36 36 H 1.08001 * 117.96404 * 162.88966 * 22 21 2 37 37 H 1.07996 * 117.95903 * 180.46968 * 23 22 21 38 38 H 1.08993 * 109.35650 * 103.05134 * 24 23 22 39 39 H 1.09001 * 109.35231 * 222.63499 * 24 23 22 40 40 H 1.09003 * 109.65853 * 289.78142 * 25 24 23 41 41 H 1.08997 * 109.63532 * 169.14034 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.7286 1.8162 0.9135 5 7 1.7205 2.2476 -1.0151 6 6 2.0898 3.5893 -0.9599 7 6 2.2976 4.2015 0.2759 8 6 2.6598 5.5147 0.3381 9 6 2.8247 6.2538 -0.8501 10 6 3.1990 7.6135 -0.7933 11 1 3.8728 7.9564 -0.0220 12 6 2.6971 8.5171 -1.7361 13 7 1.9568 8.0866 -2.7257 14 14 3.0839 10.3382 -1.5825 15 1 3.9331 10.5646 -0.3856 16 1 3.8070 10.7948 -2.7966 17 1 1.8185 11.1029 -1.4430 18 6 2.6133 5.6294 -2.0947 19 6 2.2561 4.3131 -2.1417 20 17 2.0021 3.5387 -3.6745 21 6 2.0444 -0.7299 -1.2427 22 6 1.7743 -2.2014 -1.1268 23 6 1.4896 -2.8012 -0.0155 24 6 1.3793 -2.1070 1.3104 25 6 2.0499 -0.7330 1.2432 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.2358 1.9092 -1.7842 30 1 2.1721 3.6338 1.1861 31 1 2.8199 5.9872 1.2960 32 1 1.6092 8.7131 -3.3796 33 1 2.7382 6.1896 -3.0097 34 1 1.5401 -0.3384 -2.1262 35 1 3.1181 -0.5680 -1.3381 36 1 1.8208 -2.7972 -2.0264 37 1 1.3204 -3.8674 -0.0445 38 1 0.3272 -1.9837 1.5672 39 1 1.8676 -2.7103 2.0757 40 1 3.1306 -0.8556 1.1710 41 1 1.8018 -0.1603 2.1368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334645698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:56 Heat of formation + Delta-G solvation = -34.296373 kcal Electronic energy + Delta-G solvation = -24255.071716 eV Core-core repulsion = 20738.396291 eV Total energy + Delta-G solvation = -3516.675425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.92156 -39.95369 -38.64911 -37.26534 -36.18425 -34.87157 -33.27012 -31.78928 -31.31215 -30.67568 -28.10123 -27.10114 -24.68072 -24.01853 -23.28130 -22.35694 -20.73693 -19.43974 -18.76076 -18.09958 -17.86070 -17.15118 -16.74349 -16.13686 -15.89950 -15.67211 -15.32261 -15.12618 -14.78730 -14.51473 -14.32244 -14.26133 -13.86410 -13.70139 -13.52089 -13.16414 -13.11010 -12.85380 -12.80300 -12.72361 -12.55513 -12.21454 -12.06235 -11.89084 -11.85045 -11.61876 -11.57830 -11.26230 -11.18889 -10.84803 -10.38967 -9.84547 -9.42675 -8.79193 -8.55586 -6.38243 0.57321 0.92919 1.35866 1.41189 1.42139 1.45645 1.55860 1.75784 2.22142 2.23776 2.72073 3.47205 3.53447 3.60870 3.81736 4.08086 4.20330 4.34022 4.36906 4.41395 4.56203 4.65784 4.67273 4.71444 4.86588 4.90554 4.91458 4.98349 5.05120 5.07092 5.16541 5.22041 5.28346 5.29458 5.39139 5.44823 5.68772 5.81247 5.82802 6.02037 6.08997 6.21619 6.51042 6.59572 6.84938 6.89730 7.25404 8.37286 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027211 B = 0.003236 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.759544 B = 8651.507732 C = 9392.750661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C 0.509 3.491 4 O -0.565 6.565 5 N -0.642 5.642 6 C 0.030 3.970 7 C -0.095 4.095 8 C -0.208 4.208 9 C 0.076 3.924 10 C -0.489 4.489 11 H 0.078 0.922 12 C 0.030 3.970 13 N -0.834 5.834 14 Si 0.989 3.011 15 H -0.259 1.259 16 H -0.265 1.265 17 H -0.267 1.267 18 C -0.150 4.150 19 C -0.034 4.034 20 Cl -0.087 7.087 21 C -0.081 4.081 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.089 4.089 25 C -0.095 4.095 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.411 0.589 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.287 0.713 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 -17.236 0.803 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C 0.298 3.702 4 O -0.444 6.444 5 N -0.286 5.286 6 C -0.065 4.065 7 C -0.115 4.115 8 C -0.228 4.228 9 C 0.073 3.927 10 C -0.520 4.520 11 H 0.097 0.903 12 C -0.183 4.183 13 N -0.461 5.461 14 Si 0.811 3.189 15 H -0.183 1.183 16 H -0.190 1.190 17 H -0.192 1.192 18 C -0.170 4.170 19 C -0.063 4.063 20 Cl -0.058 7.058 21 C -0.119 4.119 22 C -0.175 4.175 23 C -0.170 4.170 24 C -0.126 4.126 25 C -0.133 4.133 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.249 0.751 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.265 -16.997 1.106 17.558 hybrid contribution 0.062 0.971 -0.588 1.137 sum -4.203 -16.026 0.518 16.576 Atomic orbital electron populations 1.21926 0.90704 1.04410 1.02561 1.20847 0.98467 0.88672 0.99108 1.21358 0.79188 0.88386 0.81237 1.90616 1.38766 1.77698 1.37338 1.43051 1.56130 1.06630 1.22745 1.17079 1.12663 0.84767 0.91964 1.20636 1.00486 0.94384 0.95968 1.21080 1.09112 0.94848 0.97760 1.17902 0.90539 0.93663 0.90559 1.19742 1.26595 0.92921 1.12711 0.90337 1.26749 0.92684 1.05996 0.92878 1.69809 1.26710 1.38510 1.11118 0.85033 0.78968 0.75572 0.79373 1.18304 1.19013 1.19225 1.21113 1.04972 0.91196 0.99747 1.20419 1.07779 0.94145 0.83959 1.98244 1.95590 1.81336 1.30648 1.20517 1.00990 0.94322 0.96034 1.21985 1.01831 0.94548 0.99167 1.22238 1.00372 1.00471 0.93941 1.20552 1.01822 0.93845 0.96354 1.21433 0.99914 0.96212 0.95699 0.91748 0.88667 0.92554 0.75149 0.85477 0.87349 0.90215 0.85326 0.89554 0.91727 0.85968 0.85775 0.89235 0.89592 0.92749 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 7.74 71.98 0.56 -2.11 16 2 C -0.07 -1.60 0.63 -52.79 -0.03 -1.63 16 3 C 0.51 17.21 6.26 87.66 0.55 17.76 16 4 O -0.57 -23.59 13.03 -3.04 -0.04 -23.63 16 5 N -0.64 -22.51 4.95 -303.03 -1.50 -24.01 16 6 C 0.03 1.34 6.44 38.58 0.25 1.58 16 7 C -0.09 -4.48 8.64 22.13 0.19 -4.29 16 8 C -0.21 -10.46 9.74 22.48 0.22 -10.24 16 9 C 0.08 4.10 5.55 -21.28 -0.12 3.98 16 10 C -0.49 -26.04 9.02 23.39 0.21 -25.82 16 11 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 12 C 0.03 1.49 5.42 85.24 0.46 1.95 16 13 N -0.83 -42.77 10.59 21.82 0.23 -42.54 16 14 Si 0.99 38.05 29.56 68.60 2.03 40.07 16 15 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 16 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 17 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 18 C -0.15 -7.76 8.38 22.50 0.19 -7.58 16 19 C -0.03 -1.58 6.30 22.18 0.14 -1.44 16 20 Cl -0.09 -3.23 27.75 -2.72 -0.08 -3.31 16 21 C -0.08 -1.64 4.68 29.65 0.14 -1.50 16 22 C -0.16 -2.46 9.41 27.03 0.25 -2.21 16 23 C -0.15 -2.14 9.16 27.03 0.25 -1.89 16 24 C -0.09 -1.36 5.48 29.66 0.16 -1.20 16 25 C -0.09 -2.15 4.34 30.74 0.13 -2.01 16 26 H 0.06 1.19 7.74 -2.39 -0.02 1.17 16 27 H 0.09 1.41 5.72 -2.39 -0.01 1.40 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.41 12.21 6.90 -92.70 -0.64 11.57 16 30 H 0.13 5.93 5.76 -2.91 -0.02 5.91 16 31 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 32 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 33 H 0.13 7.02 6.13 -2.91 -0.02 7.00 16 34 H 0.09 1.56 7.76 -2.39 -0.02 1.54 16 35 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.12 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.09 1.16 6.93 -2.39 -0.02 1.15 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 41 H 0.06 1.56 7.89 -2.39 -0.02 1.54 16 Total: -1.00 -61.25 342.05 4.62 -56.63 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.42 Total: 33.44 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.55 Total: -36.65 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.27 Total: -66.56 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.04 Total: -23.63 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.07 kcal Atomic # 17 Polarization: -3.23 SS G_CDS: -0.08 Total: -3.31 kcal Total: -61.25 4.62 -56.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334645698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.339 kcal (2) G-P(sol) polarization free energy of solvation -61.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds