Wall clock time and date at job start Tue Mar 31 2020 12:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48501 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47292 * 300.00734 * 3 2 1 6 6 H 1.48508 * 109.46731 * 60.00515 * 3 2 1 7 7 C 1.37877 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47478 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.46217 * 184.99803 * 10 9 7 12 12 C 1.53193 * 109.31341 * 178.61081 * 11 10 9 13 13 N 1.46928 * 108.77589 * 54.63635 * 12 11 10 14 14 C 1.34778 * 120.63082 * 126.36166 * 13 12 11 15 15 O 1.21667 * 120.00014 * 353.66480 * 14 13 12 16 16 C 1.46869 * 119.99775 * 173.65794 * 14 13 12 17 17 C 1.33007 * 125.22792 * 148.83594 * 16 14 13 18 18 N 1.36238 * 116.11207 * 179.78106 * 17 16 14 19 19 C 1.39123 * 139.29354 * 180.11414 * 18 17 16 20 20 C 1.34229 * 107.10586 * 180.37246 * 19 18 17 21 21 N 1.33946 * 108.46722 * 359.97438 * 20 19 18 22 22 C 1.32280 * 109.18436 * 0.02562 * 21 20 19 23 23 S 1.75808 * 125.22722 * 329.13782 * 16 14 13 24 24 C 1.46920 * 118.73811 * 306.64523 * 13 12 11 25 25 C 1.52768 * 109.01164 * 53.30412 * 24 13 12 26 26 H 0.97000 * 119.99965 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47418 * 59.99526 * 9 7 2 28 28 H 1.09009 * 109.46918 * 300.00195 * 9 7 2 29 29 H 1.09001 * 109.45003 * 304.96300 * 10 9 7 30 30 H 1.09000 * 109.49673 * 58.65908 * 11 10 9 31 31 H 1.08999 * 109.49651 * 298.56642 * 11 10 9 32 32 H 1.08993 * 109.59043 * 294.84598 * 12 11 10 33 33 H 1.09001 * 109.70101 * 174.49119 * 12 11 10 34 34 H 1.08003 * 121.94483 * 359.97438 * 17 16 14 35 35 H 1.07992 * 126.44840 * 0.37788 * 19 18 17 36 36 H 1.08000 * 125.76182 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.59183 * 173.14039 * 24 13 12 38 38 H 1.09001 * 109.58611 * 293.56858 * 24 13 12 39 39 H 1.08993 * 109.56461 * 185.55428 * 25 24 13 40 40 H 1.08997 * 109.35732 * 65.50307 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8905 2.3963 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4839 -4.9837 -0.1262 12 6 2.4843 -6.1434 -0.1608 13 7 3.3504 -6.0562 1.0228 14 6 3.4915 -7.1111 1.8497 15 8 2.8125 -8.1073 1.6861 16 6 4.4650 -7.0580 2.9481 17 6 4.3357 -7.6767 4.1184 18 7 5.3562 -7.5035 5.0042 19 6 5.7157 -7.8974 6.2892 20 6 6.9020 -7.3301 6.5586 21 7 7.2794 -6.6097 5.4944 22 6 6.3550 -6.7076 4.5532 23 16 5.9767 -6.1609 2.9209 24 6 4.0549 -4.7951 1.2913 25 6 3.0412 -3.6523 1.3064 26 1 -0.4850 0.8400 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6246 -2.5571 0.8897 29 1 2.9287 -3.5552 -0.8428 30 1 0.8987 -4.9804 -1.0459 31 1 0.8182 -5.1028 0.7286 32 1 3.0912 -6.0756 -1.0636 33 1 1.9476 -7.0920 -0.1518 34 1 3.4735 -8.2838 4.3517 35 1 5.1474 -8.5390 6.9461 36 1 7.4582 -7.4367 7.4783 37 1 4.5523 -4.8533 2.2594 38 1 4.7926 -4.6151 0.5093 39 1 3.5646 -2.7015 1.4065 40 1 2.3609 -3.7839 2.1478 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:39 Heat of formation + Delta-G solvation = 59.665945 kcal Electronic energy + Delta-G solvation = -23974.908532 eV Core-core repulsion = 20496.644076 eV Total energy + Delta-G solvation = -3478.264456 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.96436 -40.31015 -37.70938 -36.55410 -34.19634 -32.34651 -31.46966 -30.79511 -29.61457 -28.17535 -25.47504 -24.34379 -23.30245 -22.87663 -21.83145 -21.19882 -19.81989 -18.95248 -18.69156 -17.19682 -16.48138 -16.38049 -16.18132 -16.06062 -15.28337 -14.76627 -14.58848 -14.43049 -14.05962 -13.82224 -13.66299 -13.25866 -13.12332 -12.97538 -12.46031 -12.10137 -11.90249 -11.64846 -11.27726 -11.06805 -10.99340 -10.78284 -10.71044 -10.54549 -10.50630 -10.26914 -10.12893 -9.72245 -9.38716 -9.28029 -9.02429 -8.58796 -8.39923 -7.93782 -6.04314 -4.06622 0.19784 0.51894 1.16148 1.70995 2.03628 2.55433 2.72499 2.94786 3.27827 3.36257 3.38832 4.00107 4.31446 4.33924 4.41907 4.76465 4.90141 4.95926 5.09575 5.25128 5.28436 5.34111 5.37878 5.54732 5.61314 5.63910 5.84986 5.89937 6.12136 6.20768 6.26800 6.37533 6.40583 6.50300 6.84199 6.89234 7.01979 7.22116 7.34539 7.61498 7.74626 7.85247 7.94813 8.36632 9.00076 9.57822 11.06891 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.003304 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.459968 B = 8471.318659 C = 9642.791064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.114 3.886 13 N -0.593 5.593 14 C 0.597 3.403 15 O -0.530 6.530 16 C -0.247 4.247 17 C 0.123 3.877 18 N -0.406 5.406 19 C -0.055 4.055 20 C 0.022 3.978 21 N -0.458 5.458 22 C 0.126 3.874 23 S 0.241 5.759 24 C 0.086 3.914 25 C -0.115 4.115 26 H 0.260 0.740 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.192 0.808 35 H 0.187 0.813 36 H 0.189 0.811 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.407 -16.342 8.452 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.168 4.168 12 C -0.008 4.008 13 N -0.324 5.324 14 C 0.382 3.618 15 O -0.409 6.409 16 C -0.369 4.369 17 C -0.011 4.011 18 N -0.085 5.085 19 C -0.186 4.186 20 C -0.126 4.126 21 N -0.181 5.181 22 C -0.238 4.238 23 S 0.494 5.506 24 C -0.038 4.038 25 C -0.153 4.153 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.209 0.791 35 H 0.204 0.796 36 H 0.205 0.795 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.259 -15.520 7.384 20.547 hybrid contribution -0.987 -0.266 1.285 1.641 sum 10.273 -15.787 8.669 20.734 Atomic orbital electron populations 1.69969 1.06075 1.26489 1.50876 1.25021 0.94796 0.99234 0.95391 0.86596 0.80167 0.84023 0.77581 1.19675 1.21086 1.21084 1.21265 0.92985 0.90898 1.50416 0.92470 1.19122 0.93560 0.90958 0.97290 1.21219 0.98071 0.94743 0.95986 1.22045 0.97578 0.94582 1.02614 1.21805 0.92526 1.00840 0.85594 1.48020 1.46623 1.12026 1.25777 1.16562 0.81314 0.83554 0.80323 1.90834 1.45964 1.32115 1.71952 1.23538 1.03583 1.09701 1.00077 1.20473 0.93039 0.99781 0.87831 1.43716 1.15684 1.35643 1.13457 1.22924 1.00953 1.09722 0.85037 1.22504 0.94525 0.97280 0.98339 1.70645 1.25112 1.22855 0.99533 1.27141 0.91188 1.01728 1.03777 1.85258 1.12638 1.49309 1.03380 1.22362 0.95901 0.83898 1.01640 1.21805 0.97342 0.96812 0.99352 0.93069 0.96479 0.96613 0.92077 0.90716 0.91862 0.91090 0.89220 0.79088 0.79638 0.79456 0.89805 0.90524 0.89113 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -13.58 8.39 -34.44 -0.29 -13.87 16 8 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 9 C 0.03 0.66 4.45 -27.89 -0.12 0.54 16 10 C -0.08 -1.47 2.10 -90.58 -0.19 -1.66 16 11 C -0.13 -2.01 5.36 -26.61 -0.14 -2.15 16 12 C 0.11 1.52 6.45 -3.71 -0.02 1.49 16 13 N -0.59 -8.00 2.98 -174.51 -0.52 -8.52 16 14 C 0.60 8.24 7.57 -12.77 -0.10 8.14 16 15 O -0.53 -8.53 16.39 5.22 0.09 -8.45 16 16 C -0.25 -2.92 5.61 -37.91 -0.21 -3.14 16 17 C 0.12 1.31 11.03 -17.41 -0.19 1.12 16 18 N -0.41 -4.49 3.14 -63.52 -0.20 -4.69 16 19 C -0.06 -0.49 12.03 -15.65 -0.19 -0.67 16 20 C 0.02 0.21 11.82 -18.04 -0.21 0.00 16 21 N -0.46 -6.03 11.32 -13.51 -0.15 -6.18 16 22 C 0.13 1.60 8.92 -88.51 -0.79 0.81 16 23 S 0.24 2.70 19.60 -107.50 -2.11 0.59 16 24 C 0.09 1.12 5.48 -3.93 -0.02 1.09 16 25 C -0.11 -1.87 5.17 -26.83 -0.14 -2.01 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 34 H 0.19 1.62 8.06 -52.48 -0.42 1.19 16 35 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.08 1.01 4.02 -26.58 -0.11 0.90 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -32.35 340.01 -9.76 -42.11 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.98 Total: -1.67 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.72 Total: -8.84 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.14 Total: -44.73 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.11 Total: 0.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.35 -9.76 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.777 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds