Wall clock time and date at job start Tue Mar 31 2020 12:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37889 * 120.47375 * 2 1 4 4 N 1.31998 * 120.84805 * 180.02562 * 3 2 1 5 5 C 1.32034 * 121.92549 * 359.97438 * 4 3 2 6 6 C 1.37838 * 120.84798 * 0.02562 * 5 4 3 7 7 C 1.39537 * 120.46821 * 180.02562 * 2 1 3 8 8 S 1.76192 * 120.87107 * 359.97438 * 7 2 1 9 9 C 1.81398 * 103.00014 * 180.02562 * 8 7 2 10 10 C 1.50702 * 109.47273 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99813 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00234 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00296 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.46736 * 89.99642 * 13 12 10 15 15 H 1.07994 * 120.00462 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99752 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99952 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47003 * 90.00695 * 18 16 14 20 20 H 1.48506 * 109.47091 * 210.00073 * 18 16 14 21 21 H 1.48497 * 109.47493 * 330.00118 * 18 16 14 22 22 C 1.46503 * 120.00042 * 359.97438 * 12 10 9 23 23 C 1.53006 * 109.47052 * 90.00198 * 22 12 10 24 24 C 1.47196 * 109.47228 * 180.02562 * 23 22 12 25 25 N 8.47402 * 135.22312 * 165.99925 * 2 1 3 26 26 H 1.09006 * 109.46966 * 270.00272 * 1 2 3 27 27 H 1.09004 * 109.47003 * 29.99626 * 1 2 3 28 28 H 1.08993 * 109.47363 * 149.99745 * 1 2 3 29 29 H 1.08002 * 119.57580 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.56964 * 179.97438 * 5 4 3 31 31 H 1.08004 * 120.46885 * 179.97438 * 6 5 4 32 32 H 1.09007 * 109.47085 * 299.99697 * 9 8 7 33 33 H 1.09001 * 109.47263 * 59.99646 * 9 8 7 34 34 H 1.08993 * 109.47162 * 209.99993 * 13 12 10 35 35 H 1.08998 * 109.46690 * 330.00312 * 13 12 10 36 36 H 0.96997 * 120.00030 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47304 * 210.00155 * 22 12 10 38 38 H 1.09001 * 109.47074 * 330.00414 * 22 12 10 39 39 H 1.09005 * 109.46791 * 300.00067 * 23 22 12 40 40 H 1.08995 * 109.47038 * 59.99726 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2063 1.1884 0.0000 4 7 3.5262 1.1970 -0.0005 5 6 4.2317 0.0810 -0.0005 6 6 3.6091 -1.1488 -0.0006 7 6 2.2145 -1.2027 -0.0005 8 16 1.3695 -2.7487 -0.0006 9 6 2.7247 -3.9545 -0.0006 10 6 2.1555 -5.3499 -0.0012 11 8 0.9540 -5.5147 -0.0012 12 7 2.9817 -6.4147 -0.0018 13 6 2.4285 -7.7713 -0.0019 14 6 2.2381 -8.2360 -1.4228 15 1 2.5031 -7.5861 -2.2436 16 6 1.7265 -9.4913 -1.6748 17 7 1.4043 -10.2830 -0.6752 18 14 1.4912 -10.0676 -3.4360 19 1 2.7253 -10.7487 -3.9030 20 1 0.3492 -11.0149 -3.4984 21 1 1.2118 -8.8975 -4.3066 22 6 4.4332 -6.2156 -0.0025 23 6 4.9391 -6.1467 1.4399 24 6 6.3974 -5.9461 1.4393 25 7 7.5223 -5.7913 1.4440 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6671 2.1242 0.0004 30 1 5.3105 0.1324 -0.0014 31 1 4.1923 -2.0578 -0.0010 32 1 3.3377 -3.8122 -0.8906 33 1 3.3377 -3.8121 0.8894 34 1 3.1155 -8.4439 0.5114 35 1 1.4674 -7.7716 0.5123 36 1 1.0441 -11.1659 -0.8525 37 1 4.9138 -7.0478 -0.5167 38 1 4.6720 -5.2844 -0.5161 39 1 4.4584 -5.3145 1.9541 40 1 4.7003 -7.0779 1.9536 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338623046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:03 Heat of formation + Delta-G solvation = 5.282467 kcal Electronic energy + Delta-G solvation = -23287.129398 eV Core-core repulsion = 19806.506697 eV Total energy + Delta-G solvation = -3480.622701 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96850 -40.79695 -38.03081 -36.75632 -34.91171 -34.51646 -33.22464 -32.23637 -31.33995 -28.72372 -28.15775 -25.35497 -24.78704 -24.70171 -23.10110 -20.31133 -19.02314 -18.72192 -18.32855 -18.11113 -17.59032 -17.02248 -16.48926 -16.42828 -16.20739 -15.80958 -15.55463 -15.36286 -14.93599 -14.59812 -14.36082 -14.25557 -14.07702 -13.70434 -13.64013 -13.60053 -13.55651 -13.30899 -13.15521 -12.93883 -12.74351 -12.57288 -12.51772 -12.18439 -11.92000 -11.68822 -11.49009 -11.37978 -10.79711 -10.58264 -10.33103 -9.92760 -9.56324 -8.62347 -8.18739 -6.30524 0.09981 0.15805 0.21970 1.30032 1.40090 1.42949 1.51547 1.61266 1.79178 1.84312 2.22835 2.43856 2.78391 3.04617 3.14283 3.56851 3.59834 3.81498 3.89559 3.93030 3.97285 4.09327 4.10602 4.21392 4.45821 4.54085 4.56256 4.77612 4.78876 4.81630 4.88236 5.03337 5.07395 5.15958 5.24932 5.32903 5.56947 5.71786 5.83458 6.11061 6.58270 6.63022 6.79276 7.02561 7.25875 7.42521 8.88068 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.003566 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.303222 B = 7850.731076 C = 9446.980306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.130 4.130 3 C 0.108 3.892 4 N -0.514 5.514 5 C 0.102 3.898 6 C -0.188 4.188 7 C -0.072 4.072 8 S -0.044 6.044 9 C -0.146 4.146 10 C 0.521 3.479 11 O -0.570 6.570 12 N -0.589 5.589 13 C 0.261 3.739 14 C -0.541 4.541 15 H 0.055 0.945 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.109 3.891 23 C -0.040 4.040 24 C 0.245 3.755 25 N -0.487 5.487 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.181 0.819 30 H 0.179 0.821 31 H 0.157 0.843 32 H 0.140 0.860 33 H 0.151 0.849 34 H 0.039 0.961 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 19.081 3.310 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.138 4.138 3 C -0.050 4.050 4 N -0.225 5.225 5 C -0.055 4.055 6 C -0.214 4.214 7 C -0.193 4.193 8 S 0.200 5.800 9 C -0.296 4.296 10 C 0.308 3.692 11 O -0.450 6.450 12 N -0.319 5.319 13 C 0.140 3.860 14 C -0.580 4.580 15 H 0.073 0.927 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.015 4.015 23 C -0.081 4.081 24 C -0.072 4.072 25 N -0.165 5.165 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.198 0.802 30 H 0.196 0.804 31 H 0.174 0.826 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.155 0.845 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.774 19.454 3.358 20.311 hybrid contribution 0.189 -1.564 -0.846 1.788 sum 4.964 17.890 2.512 18.735 Atomic orbital electron populations 1.20775 0.88816 1.03773 1.03597 1.20799 0.98461 0.92109 1.02437 1.22987 0.89741 0.97824 0.94433 1.67771 1.08837 1.32172 1.13692 1.23032 1.01411 0.87034 0.94049 1.22394 0.92923 1.01404 1.04672 1.22682 0.97387 0.98177 1.01097 1.86662 1.09993 0.92759 1.90617 1.24020 1.02034 0.93244 1.10288 1.20025 0.86391 0.86169 0.76627 1.90733 1.16812 1.86388 1.51037 1.47972 1.06437 1.06499 1.71002 1.18865 0.93965 0.77445 0.95759 1.21744 1.42717 0.99993 0.93535 0.92707 1.25688 0.95011 0.96950 1.00992 1.70014 1.44281 1.09561 1.32577 0.85590 0.78017 0.78003 0.80265 1.19278 1.21134 1.19897 1.21618 0.79305 1.05239 0.95356 1.19844 0.80741 1.07664 0.99812 1.29086 0.94857 0.91464 0.91841 1.81255 1.14252 1.11105 1.09887 0.89774 0.88699 0.92047 0.80219 0.80358 0.82585 0.84219 0.83077 0.94285 0.97502 0.92565 0.89338 0.87254 0.84541 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.64 71.24 0.69 -1.10 16 2 C -0.13 -2.49 5.92 -19.63 -0.12 -2.61 16 3 C 0.11 1.94 10.85 84.58 0.92 2.86 16 4 N -0.51 -10.54 10.36 -196.18 -2.03 -12.57 16 5 C 0.10 1.77 11.17 84.57 0.94 2.71 16 6 C -0.19 -3.20 9.43 22.50 0.21 -2.99 16 7 C -0.07 -1.50 6.16 22.90 0.14 -1.36 16 8 S -0.04 -1.10 19.45 -56.49 -1.10 -2.20 16 9 C -0.15 -3.06 3.41 71.24 0.24 -2.82 16 10 C 0.52 17.32 7.69 87.66 0.67 17.99 16 11 O -0.57 -25.59 15.44 -3.02 -0.05 -25.64 16 12 N -0.59 -19.22 2.46 -826.15 -2.03 -21.25 16 13 C 0.26 11.89 5.16 85.63 0.44 12.33 16 14 C -0.54 -28.09 9.39 25.60 0.24 -27.85 16 15 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 16 C 0.01 0.70 5.46 84.66 0.46 1.16 16 17 N -0.92 -52.29 13.29 21.45 0.28 -52.00 16 18 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 C 0.11 2.29 5.17 86.38 0.45 2.73 16 23 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 24 C 0.24 4.68 15.43 89.45 1.38 6.06 16 25 N -0.49 -12.40 18.53 20.00 0.37 -12.03 16 26 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.09 1.06 8.09 -2.38 -0.02 1.04 16 28 H 0.06 1.18 6.91 -2.39 -0.02 1.17 16 29 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.16 1.81 6.08 -2.91 -0.02 1.80 16 32 H 0.14 2.27 7.05 -2.39 -0.02 2.25 16 33 H 0.15 1.97 6.84 -2.39 -0.02 1.96 16 34 H 0.04 1.76 8.07 -2.39 -0.02 1.74 16 35 H 0.01 0.37 7.42 -2.39 -0.02 0.35 16 36 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.09 2.09 8.07 -2.39 -0.02 2.08 16 38 H 0.11 1.56 6.44 -2.39 -0.02 1.54 16 39 H 0.14 1.30 7.22 -2.38 -0.02 1.29 16 40 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.93 362.02 5.39 -69.54 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.07 Total: 4.78 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 6.85 Total: 6.70 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -3.41 Total: -97.85 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.05 Total: -25.64 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -1.10 Total: -2.20 kcal Total: -74.93 5.39 -69.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338623046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.822 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds