Wall clock time and date at job start Tue Mar 31 2020 12:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35170 * 125.71847 * 2 1 4 4 C 1.40264 * 107.74132 * 180.21980 * 3 2 1 5 5 C 1.36529 * 107.31529 * 359.76934 * 4 3 2 6 6 C 1.47206 * 126.09758 * 179.97438 * 5 4 3 7 7 N 1.30102 * 125.33309 * 0.02765 * 6 5 4 8 8 C 1.32661 * 115.73591 * 179.97438 * 7 6 5 9 9 C 1.47290 * 122.42056 * 179.97438 * 8 7 6 10 10 O 1.21634 * 119.99867 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99992 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00327 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47567 * 179.97438 * 12 11 9 14 14 C 1.50692 * 109.47429 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00497 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00420 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99581 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00222 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46911 * 60.00469 * 18 16 14 20 20 H 1.48499 * 109.46869 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47157 * 300.00065 * 18 16 14 22 22 C 1.35142 * 115.16192 * 359.97438 * 8 7 6 23 23 S 1.70995 * 109.16594 * 359.76828 * 22 8 7 24 24 N 1.36174 * 125.73058 * 179.81851 * 2 1 3 25 25 C 1.46506 * 125.70732 * 0.04485 * 24 2 1 26 26 H 1.08996 * 109.47427 * 270.16882 * 1 2 3 27 27 H 1.08996 * 109.46961 * 30.17982 * 1 2 3 28 28 H 1.09009 * 109.46588 * 150.17514 * 1 2 3 29 29 H 1.07995 * 126.13320 * 359.94970 * 3 2 1 30 30 H 1.08009 * 126.34435 * 179.72952 * 4 3 2 31 31 H 0.97004 * 120.00077 * 0.02562 * 11 9 8 32 32 H 1.09005 * 109.47015 * 300.00349 * 12 11 9 33 33 H 1.08998 * 109.46949 * 59.99505 * 12 11 9 34 34 H 1.09005 * 109.47312 * 300.00257 * 13 12 11 35 35 H 1.09006 * 109.47171 * 60.00105 * 13 12 11 36 36 H 0.96998 * 119.99650 * 180.02562 * 17 16 14 37 37 H 1.08000 * 125.41795 * 179.97438 * 22 8 7 38 38 H 1.09001 * 109.47060 * 269.69115 * 25 24 2 39 39 H 1.09004 * 109.47073 * 29.68604 * 25 24 2 40 40 H 1.09000 * 109.47212 * 149.68687 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2961 1.0974 0.0000 4 6 3.6303 0.6645 -0.0051 5 6 3.6145 -0.7007 -0.0029 6 6 4.7939 -1.5816 -0.0072 7 7 6.0319 -1.1816 -0.0132 8 6 6.9475 -2.1416 -0.0157 9 6 8.3922 -1.8549 -0.0230 10 8 9.1937 -2.7698 -0.0255 11 7 8.8260 -0.5789 -0.0270 12 6 10.2629 -0.2937 -0.0337 13 6 10.4824 1.2204 -0.0378 14 6 11.9605 1.5137 -0.0454 15 1 12.6723 0.7015 -0.0467 16 6 12.4043 2.8192 -0.0496 17 7 11.5376 3.8083 -0.0475 18 14 14.2366 3.1827 -0.0582 19 1 14.8530 2.5904 -1.2725 20 1 14.4495 4.6524 -0.0623 21 1 14.8637 2.5945 1.1525 22 6 6.4589 -3.4016 -0.0109 23 16 4.7501 -3.3410 0.0035 24 7 2.3022 -1.1054 0.0035 25 6 1.8359 -2.4943 0.0070 26 1 -0.3634 0.0030 1.0276 27 1 -0.3633 0.8883 -0.5166 28 1 -0.3633 -0.8916 -0.5112 29 1 1.9598 2.1237 -0.0008 30 1 4.5076 1.2945 -0.0106 31 1 8.1867 0.1507 -0.0247 32 1 10.7232 -0.7256 0.8550 33 1 10.7154 -0.7285 -0.9249 34 1 10.0222 1.6519 -0.9268 35 1 10.0298 1.6556 0.8533 36 1 11.8498 4.7267 -0.0508 37 1 7.0532 -4.3033 -0.0124 38 1 1.7248 -2.8377 1.0355 39 1 0.8741 -2.5559 -0.5024 40 1 2.5615 -3.1225 -0.5096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342650048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:57 Heat of formation + Delta-G solvation = 23.461407 kcal Electronic energy + Delta-G solvation = -22916.189327 eV Core-core repulsion = 19436.354924 eV Total energy + Delta-G solvation = -3479.834403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33392 -41.48973 -39.63425 -36.70468 -34.85832 -33.96299 -33.44330 -31.76242 -31.20017 -28.07853 -27.38260 -27.27929 -25.54517 -23.76286 -22.76440 -21.73272 -20.53795 -20.08887 -19.58085 -18.53107 -17.78564 -17.68465 -16.92800 -16.59052 -16.52889 -16.48416 -15.65210 -15.53585 -15.36609 -14.83782 -14.58984 -14.31393 -14.26266 -13.99606 -13.74292 -13.52326 -13.34071 -13.26023 -13.03327 -12.93221 -12.63540 -12.55250 -12.53142 -12.28176 -11.76847 -11.54771 -11.22434 -11.00913 -10.99455 -10.62051 -10.41523 -10.07519 -9.65894 -8.66288 -8.24401 -6.36265 -0.83390 -0.01014 0.33647 0.46603 1.40883 1.42481 1.44360 1.52268 1.65049 1.98553 2.19013 2.30319 2.43468 2.86050 3.09681 3.57187 3.81603 3.98250 4.01660 4.12517 4.27559 4.36423 4.40626 4.42804 4.56245 4.60909 4.62514 4.78707 4.81955 4.89126 5.15903 5.17970 5.25145 5.35690 5.42676 5.52642 5.75121 5.88977 5.95903 6.12379 6.24456 6.32876 6.55775 6.76417 7.03880 7.32966 8.87712 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002655 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.330766 B =10544.684199 C =12183.954326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.060 3.940 3 C -0.223 4.223 4 C -0.137 4.137 5 C 0.026 3.974 6 C 0.115 3.885 7 N -0.463 5.463 8 C 0.000 4.000 9 C 0.581 3.419 10 O -0.575 6.575 11 N -0.701 5.701 12 C 0.139 3.861 13 C 0.023 3.977 14 C -0.548 4.548 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.970 3.030 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.232 4.232 23 S 0.254 5.746 24 N -0.437 5.437 25 C 0.052 3.948 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.130 0.870 31 H 0.412 0.588 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.266 0.734 37 H 0.201 0.799 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.946 -14.204 0.134 33.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.247 4.247 4 C -0.168 4.168 5 C -0.087 4.087 6 C -0.160 4.160 7 N -0.178 5.178 8 C -0.135 4.135 9 C 0.366 3.634 10 O -0.456 6.456 11 N -0.350 5.350 12 C 0.016 3.984 13 C -0.014 4.014 14 C -0.586 4.586 15 H 0.081 0.919 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.794 3.206 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.374 4.374 23 S 0.514 5.486 24 N -0.114 5.114 25 C -0.089 4.089 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.174 0.826 30 H 0.148 0.852 31 H 0.247 0.753 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.218 0.782 38 H 0.118 0.882 39 H 0.146 0.854 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -30.058 -15.309 0.147 33.732 hybrid contribution 2.254 1.124 -0.026 2.518 sum -27.804 -14.185 0.122 31.214 Atomic orbital electron populations 1.20542 0.84362 1.05011 1.04199 1.21115 0.95219 0.84574 1.04758 1.20972 0.91586 0.99412 1.12711 1.21214 0.98652 0.92325 1.04576 1.17108 0.81417 0.91804 1.18381 1.24850 0.92372 0.94937 1.03886 1.66889 0.99504 1.34866 1.16577 1.19885 0.93805 0.89367 1.10470 1.17579 0.86567 0.82993 0.76297 1.90745 1.56082 1.45609 1.53129 1.46071 1.09392 1.07552 1.72010 1.21374 0.78774 0.97852 1.00421 1.19122 0.96707 0.89401 0.96171 1.21419 0.92520 0.92790 1.51911 0.91915 1.25951 1.03213 0.95952 0.94274 1.70079 1.36227 0.99639 1.50752 0.85428 0.78849 0.77124 0.79217 1.19188 1.20517 1.19177 1.26959 1.02598 1.02290 1.05552 1.83113 0.97623 1.02670 1.65159 1.44064 1.03325 1.07773 1.56278 1.22570 1.03055 0.77735 1.05560 0.89332 0.88707 0.89606 0.82611 0.85188 0.75252 0.92770 0.92774 0.97635 0.97635 0.92477 0.78225 0.88247 0.85450 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.09 71.24 0.72 0.29 16 2 C 0.06 0.86 6.89 41.18 0.28 1.15 16 3 C -0.22 -4.34 10.73 22.06 0.24 -4.10 16 4 C -0.14 -3.52 10.75 22.36 0.24 -3.28 16 5 C 0.03 0.61 6.85 40.24 0.28 0.88 16 6 C 0.12 2.95 7.40 87.31 0.65 3.60 16 7 N -0.46 -14.93 10.01 -180.05 -1.80 -16.73 16 8 C 0.00 0.00 6.64 40.69 0.27 0.27 16 9 C 0.58 23.52 7.79 86.62 0.68 24.20 16 10 O -0.57 -25.77 16.65 -4.14 -0.07 -25.84 16 11 N -0.70 -29.63 5.55 -466.50 -2.59 -32.22 16 12 C 0.14 6.57 5.61 86.38 0.48 7.05 16 13 C 0.02 1.28 5.09 29.84 0.15 1.43 16 14 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 15 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 16 C 0.00 0.28 5.46 84.66 0.46 0.74 16 17 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 18 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 C -0.23 -5.87 10.56 67.11 0.71 -5.16 16 23 S 0.25 4.36 19.72 -56.49 -1.11 3.25 16 24 N -0.44 -6.87 3.17 -520.29 -1.65 -8.52 16 25 C 0.05 0.34 10.16 127.77 1.30 1.64 16 26 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.09 0.11 7.03 -2.38 -0.02 0.10 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.41 16.74 7.95 -92.70 -0.74 16.00 16 32 H 0.05 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 35 H 0.01 0.30 8.14 -2.38 -0.02 0.29 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.20 4.52 7.99 -2.91 -0.02 4.49 16 38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.13 0.06 7.00 -2.38 -0.02 0.04 16 40 H 0.08 0.54 5.21 -8.97 -0.05 0.49 16 Total: -1.00 -76.94 356.71 2.08 -74.86 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.30 Total: 17.62 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.69 Total: -3.02 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -5.76 Total: -113.82 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.07 Total: -25.84 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.11 Total: 3.25 kcal Total: -76.94 2.08 -74.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.321 kcal (2) G-P(sol) polarization free energy of solvation -76.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds