Wall clock time and date at job start Tue Mar 31 2020 12:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34986 * 125.51610 * 2 1 4 4 C 1.41208 * 108.24170 * 180.26038 * 3 2 1 5 5 N 1.32887 * 126.38130 * 180.02562 * 4 3 2 6 6 C 1.34032 * 119.99906 * 359.97438 * 5 4 3 7 7 O 1.21988 * 120.00194 * 359.97438 * 6 5 4 8 8 C 1.47104 * 120.00027 * 180.02562 * 6 5 4 9 9 C 1.36720 * 126.12556 * 180.02562 * 8 6 5 10 10 C 1.39939 * 107.26480 * 179.97438 * 9 8 6 11 11 C 1.35417 * 107.77456 * 0.02562 * 10 9 8 12 12 N 1.48032 * 125.69130 * 180.02562 * 11 10 9 13 13 O 1.21799 * 119.99731 * 179.97438 * 12 11 10 14 14 O 1.21795 * 120.00092 * 359.97397 * 12 11 10 15 15 N 1.35702 * 108.61370 * 359.75423 * 11 10 9 16 16 H 0.97001 * 125.70400 * 180.24775 * 15 11 10 17 17 N 1.37491 * 107.23411 * 0.02562 * 4 3 2 18 18 H 0.97003 * 126.36793 * 179.97438 * 17 4 3 19 19 N 1.36455 * 125.52358 * 180.30659 * 2 1 3 20 20 C 1.46499 * 125.84720 * 359.75782 * 19 2 1 21 21 C 1.50699 * 109.47345 * 85.00306 * 20 19 2 22 22 H 1.07999 * 119.99600 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00172 * 179.97438 * 21 20 19 24 24 N 1.31506 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47194 * 90.00039 * 25 23 21 27 27 H 1.48499 * 109.46962 * 210.00398 * 25 23 21 28 28 H 1.48501 * 109.47198 * 329.99954 * 25 23 21 29 29 H 1.09006 * 109.46972 * 269.68757 * 1 2 3 30 30 H 1.08993 * 109.47367 * 29.69251 * 1 2 3 31 31 H 1.09003 * 109.46695 * 149.69341 * 1 2 3 32 32 H 1.07997 * 125.87671 * 0.24434 * 3 2 1 33 33 H 1.08002 * 126.36664 * 359.94278 * 9 8 6 34 34 H 1.08002 * 126.10889 * 179.97438 * 10 9 8 35 35 H 1.09008 * 109.46706 * 204.99877 * 20 19 2 36 36 H 1.09004 * 109.47445 * 324.99813 * 20 19 2 37 37 H 0.97006 * 120.00333 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2912 1.0987 0.0000 4 6 3.6396 0.6794 -0.0061 5 7 4.7100 1.4670 -0.0075 6 6 4.5618 2.7991 -0.0034 7 8 3.4445 3.2885 0.0011 8 6 5.7467 3.6709 -0.0055 9 6 5.7415 5.0381 -0.0014 10 6 7.0762 5.4585 -0.0049 11 6 7.8579 4.3528 -0.0116 12 7 9.3382 4.3416 -0.0165 13 8 9.9391 3.2822 -0.0220 14 8 9.9551 5.3918 -0.0152 15 7 7.0579 3.2567 -0.0069 16 1 7.3603 2.3350 -0.0065 17 7 3.6386 -0.6955 -0.0103 18 1 4.4193 -1.2712 -0.0152 19 7 2.2999 -1.1106 -0.0059 20 6 1.8319 -2.4988 -0.0084 21 6 1.5493 -2.9312 -1.4240 22 1 1.7026 -2.2408 -2.2403 23 6 1.0952 -4.2082 -1.6772 24 7 0.9081 -5.0486 -0.6832 25 14 0.7442 -4.7439 -3.4320 26 1 1.9725 -5.3304 -4.0256 27 1 -0.3393 -5.7595 -3.4321 28 1 0.3201 -3.5677 -4.2332 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 0.8927 -0.5090 31 1 -0.3633 -0.8873 -0.5186 32 1 1.9466 2.1222 0.0037 33 1 4.8693 5.6751 0.0032 34 1 7.4211 6.4820 -0.0034 35 1 2.6001 -3.1418 0.4215 36 1 0.9202 -2.5760 0.5840 37 1 0.5882 -5.9470 -0.8612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348794894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:41 Heat of formation + Delta-G solvation = 104.183742 kcal Electronic energy + Delta-G solvation = -25136.066754 eV Core-core repulsion = 21113.439520 eV Total energy + Delta-G solvation = -4022.627234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.54061 -41.34674 -41.11308 -38.47808 -36.70928 -34.63628 -33.39129 -32.57974 -31.71190 -31.08026 -30.50024 -27.78287 -27.28044 -26.26068 -23.79324 -22.77937 -21.57034 -20.94845 -20.46125 -19.90832 -19.23157 -18.49841 -17.76064 -17.45846 -17.07947 -16.45412 -15.58757 -15.35611 -15.13181 -14.87009 -14.53675 -14.25996 -13.64181 -13.52916 -13.31955 -13.12436 -12.93030 -12.91227 -12.60751 -12.23504 -12.01089 -11.77362 -11.48345 -11.44625 -11.31556 -11.17620 -10.64942 -10.58720 -10.01524 -9.69966 -9.61097 -9.15715 -9.05488 -9.00893 -8.86264 -7.29106 -6.65372 -4.80535 -0.08215 0.93594 1.09773 1.70768 1.79936 2.25780 2.81851 2.85122 2.96390 3.05334 3.08217 3.78066 3.96109 4.17361 4.36540 4.62204 4.67893 4.78642 4.79456 5.31386 5.35022 5.50839 5.55856 5.67292 5.77191 5.91291 5.96756 6.07426 6.22957 6.27351 6.36799 6.40502 6.51545 6.86790 7.15628 7.23818 7.33095 7.36049 7.52125 7.61191 7.87361 8.27690 8.83685 8.91110 10.38958 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002493 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.833917 B =11230.629392 C =12048.284199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.196 3.804 3 C -0.330 4.330 4 C 0.472 3.528 5 N -0.702 5.702 6 C 0.552 3.448 7 O -0.556 6.556 8 C 0.102 3.898 9 C -0.149 4.149 10 C -0.090 4.090 11 C 0.048 3.952 12 N 0.062 4.938 13 O -0.180 6.180 14 O -0.146 6.146 15 N -0.497 5.497 16 H 0.439 0.561 17 N -0.461 5.461 18 H 0.447 0.553 19 N -0.331 5.331 20 C 0.251 3.749 21 C -0.561 4.561 22 H 0.070 0.930 23 C 0.073 3.927 24 N -0.884 5.884 25 Si 0.910 3.090 26 H -0.276 1.276 27 H -0.280 1.280 28 H -0.269 1.269 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 11.378 2.606 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 C -0.362 4.362 4 C 0.224 3.776 5 N -0.468 5.468 6 C 0.336 3.664 7 O -0.436 6.436 8 C -0.020 4.020 9 C -0.174 4.174 10 C -0.119 4.119 11 C -0.148 4.148 12 N 0.577 4.423 13 O -0.389 6.389 14 O -0.361 6.361 15 N -0.097 5.097 16 H 0.280 0.720 17 N -0.181 5.181 18 H 0.295 0.705 19 N -0.117 5.117 20 C 0.135 3.865 21 C -0.599 4.599 22 H 0.088 0.912 23 C -0.133 4.133 24 N -0.520 5.520 25 Si 0.736 3.264 26 H -0.201 1.201 27 H -0.206 1.206 28 H -0.194 1.194 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.203 0.797 33 H 0.188 0.812 34 H 0.186 0.814 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.615 10.521 2.668 11.165 hybrid contribution 0.438 -1.097 -0.927 1.501 sum 3.053 9.424 1.741 10.058 Atomic orbital electron populations 1.20703 0.85992 1.05354 1.03908 1.21425 0.94768 0.85365 0.91658 1.22247 0.90910 1.00513 1.22487 1.18933 0.91447 0.82053 0.85158 1.68698 1.28851 1.04365 1.44924 1.17685 0.85146 0.85698 0.77921 1.90728 1.24229 1.78939 1.49666 1.20815 0.82091 0.94380 1.04754 1.21203 0.96877 0.92532 1.06779 1.20843 0.91680 0.97600 1.01748 1.20808 0.79250 0.90155 1.24612 1.42590 1.01392 1.00686 0.97629 1.94583 1.69516 1.19938 1.54856 1.94558 1.66445 1.21393 1.53703 1.41784 1.04922 1.08842 1.54201 0.72027 1.44614 0.99206 1.05160 1.69155 0.70485 1.48150 0.92570 1.08564 1.62373 1.20154 0.96653 0.69805 0.99849 1.21337 1.48211 0.98891 0.91446 0.91196 1.24945 0.94093 0.95704 0.98586 1.69885 1.43613 1.06935 1.31592 0.86287 0.78473 0.78806 0.82857 1.20129 1.20550 1.19359 0.89551 0.89052 0.88770 0.79737 0.81223 0.81383 0.92909 0.91114 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.92 36.01 0.36 -0.88 16 2 C 0.20 3.09 6.93 -81.69 -0.57 2.53 16 3 C -0.33 -5.58 9.41 -39.61 -0.37 -5.95 16 4 C 0.47 8.22 8.07 -155.26 -1.25 6.97 16 5 N -0.70 -12.15 10.51 -12.38 -0.13 -12.28 16 6 C 0.55 9.47 7.72 -13.00 -0.10 9.37 16 7 O -0.56 -10.39 13.81 4.93 0.07 -10.32 16 8 C 0.10 1.46 7.04 -82.28 -0.58 0.88 16 9 C -0.15 -1.79 10.59 -39.49 -0.42 -2.21 16 10 C -0.09 -0.99 10.48 -39.95 -0.42 -1.41 16 11 C 0.05 0.63 8.07 -143.91 -1.16 -0.53 16 12 N 0.06 0.86 4.45 33.02 0.15 1.01 16 13 O -0.18 -2.66 19.24 -29.46 -0.57 -3.23 16 14 O -0.15 -2.03 19.01 -29.46 -0.56 -2.59 16 15 N -0.50 -6.54 6.07 -6.64 -0.04 -6.58 16 16 H 0.44 5.43 8.96 -40.82 -0.37 5.06 16 17 N -0.46 -7.46 7.38 31.34 0.23 -7.23 16 18 H 0.45 6.27 8.96 -182.55 -1.64 4.63 16 19 N -0.33 -5.68 3.63 -58.03 -0.21 -5.89 16 20 C 0.25 4.87 5.71 -5.19 -0.03 4.84 16 21 C -0.56 -12.47 9.39 -34.44 -0.32 -12.80 16 22 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 23 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 24 N -0.88 -21.34 13.29 55.43 0.74 -20.60 16 25 Si 0.91 18.34 29.54 -169.99 -5.02 13.32 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 27 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 28 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.26 7.81 -51.93 -0.41 0.86 16 32 H 0.19 3.20 5.77 -52.49 -0.30 2.90 16 33 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 36 H 0.07 1.38 7.89 -51.93 -0.41 0.97 16 37 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -26.91 343.09 -9.92 -36.82 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.78 Total: 10.04 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -4.96 Total: 2.37 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.73 Total: -51.58 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -1.06 Total: -16.14 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.91 -9.92 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348794894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.008 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds