Wall clock time and date at job start Tue Mar 31 2020 12:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34986 * 125.51610 * 2 1 4 4 C 1.41208 * 108.24170 * 180.26038 * 3 2 1 5 5 N 1.32887 * 126.38130 * 180.02562 * 4 3 2 6 6 C 1.34032 * 119.99906 * 359.97438 * 5 4 3 7 7 O 1.21988 * 120.00194 * 359.97438 * 6 5 4 8 8 C 1.47104 * 120.00027 * 180.02562 * 6 5 4 9 9 C 1.36720 * 126.12556 * 180.02562 * 8 6 5 10 10 C 1.39939 * 107.26480 * 179.97438 * 9 8 6 11 11 C 1.35417 * 107.77456 * 0.02562 * 10 9 8 12 12 N 1.48032 * 125.69130 * 180.02562 * 11 10 9 13 13 O 1.21799 * 119.99731 * 179.97438 * 12 11 10 14 14 O 1.21795 * 120.00092 * 359.97397 * 12 11 10 15 15 N 1.35702 * 108.61370 * 359.75423 * 11 10 9 16 16 H 0.97001 * 125.70400 * 180.24775 * 15 11 10 17 17 N 1.37491 * 107.23411 * 0.02562 * 4 3 2 18 18 H 0.97003 * 126.36793 * 179.97438 * 17 4 3 19 19 N 1.36455 * 125.52358 * 180.30659 * 2 1 3 20 20 C 1.46499 * 125.84720 * 359.75782 * 19 2 1 21 21 C 1.50699 * 109.47345 * 85.00306 * 20 19 2 22 22 H 1.07999 * 119.99600 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00172 * 179.97438 * 21 20 19 24 24 N 1.31506 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47194 * 90.00039 * 25 23 21 27 27 H 1.48499 * 109.46962 * 210.00398 * 25 23 21 28 28 H 1.48501 * 109.47198 * 329.99954 * 25 23 21 29 29 H 1.09006 * 109.46972 * 269.68757 * 1 2 3 30 30 H 1.08993 * 109.47367 * 29.69251 * 1 2 3 31 31 H 1.09003 * 109.46695 * 149.69341 * 1 2 3 32 32 H 1.07997 * 125.87671 * 0.24434 * 3 2 1 33 33 H 1.08002 * 126.36664 * 359.94278 * 9 8 6 34 34 H 1.08002 * 126.10889 * 179.97438 * 10 9 8 35 35 H 1.09008 * 109.46706 * 204.99877 * 20 19 2 36 36 H 1.09004 * 109.47445 * 324.99813 * 20 19 2 37 37 H 0.97006 * 120.00333 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2912 1.0987 0.0000 4 6 3.6396 0.6794 -0.0061 5 7 4.7100 1.4670 -0.0075 6 6 4.5618 2.7991 -0.0034 7 8 3.4445 3.2885 0.0011 8 6 5.7467 3.6709 -0.0055 9 6 5.7415 5.0381 -0.0014 10 6 7.0762 5.4585 -0.0049 11 6 7.8579 4.3528 -0.0116 12 7 9.3382 4.3416 -0.0165 13 8 9.9391 3.2822 -0.0220 14 8 9.9551 5.3918 -0.0152 15 7 7.0579 3.2567 -0.0069 16 1 7.3603 2.3350 -0.0065 17 7 3.6386 -0.6955 -0.0103 18 1 4.4193 -1.2712 -0.0152 19 7 2.2999 -1.1106 -0.0059 20 6 1.8319 -2.4988 -0.0084 21 6 1.5493 -2.9312 -1.4240 22 1 1.7026 -2.2408 -2.2403 23 6 1.0952 -4.2082 -1.6772 24 7 0.9081 -5.0486 -0.6832 25 14 0.7442 -4.7439 -3.4320 26 1 1.9725 -5.3304 -4.0256 27 1 -0.3393 -5.7595 -3.4321 28 1 0.3201 -3.5677 -4.2332 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 0.8927 -0.5090 31 1 -0.3633 -0.8873 -0.5186 32 1 1.9466 2.1222 0.0037 33 1 4.8693 5.6751 0.0032 34 1 7.4211 6.4820 -0.0034 35 1 2.6001 -3.1418 0.4215 36 1 0.9202 -2.5760 0.5840 37 1 0.5882 -5.9470 -0.8612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348794894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:40 Heat of formation + Delta-G solvation = 89.433597 kcal Electronic energy + Delta-G solvation = -25136.706368 eV Core-core repulsion = 21113.439520 eV Total energy + Delta-G solvation = -4023.266848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.59418 -42.58279 -42.25201 -39.79076 -37.80133 -36.12760 -34.92210 -33.83283 -32.85070 -32.32573 -31.68782 -28.91438 -28.74842 -27.48825 -25.23345 -24.12088 -22.69441 -22.02146 -21.55007 -21.14515 -20.39403 -19.58942 -19.00196 -18.83314 -18.60383 -17.71901 -16.96640 -16.69825 -16.58204 -16.07702 -15.77655 -15.44809 -14.91403 -14.55162 -14.48059 -14.35951 -14.28149 -14.02546 -13.77268 -13.72860 -13.25914 -12.99230 -12.87982 -12.78003 -12.53796 -12.43038 -12.33882 -12.11441 -11.32906 -11.21482 -10.81173 -10.55943 -10.42598 -10.21472 -10.07836 -8.71806 -8.35511 -6.59917 -1.17753 -0.14212 -0.10855 0.40761 0.62180 1.24750 1.35871 1.41398 1.48888 1.61775 1.78626 2.27200 2.53013 2.86677 2.91399 3.15050 3.59931 3.65660 3.85681 4.11875 4.20804 4.36335 4.54001 4.72237 4.74583 4.76600 4.77937 4.89899 4.93735 5.02621 5.17657 5.26804 5.38806 5.47038 5.65336 5.80491 5.87173 5.99628 6.26935 6.41369 6.48274 6.61382 7.14146 7.51055 8.62796 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002493 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.833917 B =11230.629392 C =12048.284199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.202 3.798 3 C -0.340 4.340 4 C 0.458 3.542 5 N -0.708 5.708 6 C 0.544 3.456 7 O -0.577 6.577 8 C 0.079 3.921 9 C -0.135 4.135 10 C -0.071 4.071 11 C 0.041 3.959 12 N 0.062 4.938 13 O -0.213 6.213 14 O -0.130 6.130 15 N -0.500 5.500 16 H 0.438 0.562 17 N -0.458 5.458 18 H 0.454 0.546 19 N -0.340 5.340 20 C 0.265 3.735 21 C -0.563 4.563 22 H 0.059 0.941 23 C 0.034 3.966 24 N -0.911 5.911 25 Si 0.960 3.040 26 H -0.279 1.279 27 H -0.277 1.277 28 H -0.268 1.268 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.183 0.817 33 H 0.189 0.811 34 H 0.203 0.797 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 12.966 2.376 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.074 3.926 3 C -0.371 4.371 4 C 0.210 3.790 5 N -0.474 5.474 6 C 0.330 3.670 7 O -0.458 6.458 8 C -0.042 4.042 9 C -0.160 4.160 10 C -0.100 4.100 11 C -0.155 4.155 12 N 0.575 4.425 13 O -0.415 6.415 14 O -0.351 6.351 15 N -0.101 5.101 16 H 0.279 0.721 17 N -0.180 5.180 18 H 0.303 0.697 19 N -0.126 5.126 20 C 0.148 3.852 21 C -0.601 4.601 22 H 0.077 0.923 23 C -0.169 4.169 24 N -0.548 5.548 25 Si 0.786 3.214 26 H -0.205 1.205 27 H -0.202 1.202 28 H -0.193 1.193 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.200 0.800 33 H 0.206 0.794 34 H 0.220 0.780 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.297 12.047 2.439 12.504 hybrid contribution 0.571 -1.451 -0.838 1.770 sum 2.869 10.596 1.601 11.093 Atomic orbital electron populations 1.20875 0.83410 1.05845 1.05607 1.21973 0.96219 0.84386 0.89981 1.22238 0.90916 1.00649 1.23266 1.19172 0.91978 0.82435 0.85371 1.68770 1.28905 1.04718 1.45028 1.18054 0.85893 0.85788 0.77291 1.90701 1.25202 1.79203 1.50686 1.20596 0.81676 0.94922 1.07005 1.21505 0.97969 0.91590 1.04970 1.21270 0.90653 0.98550 0.99478 1.21016 0.78672 0.90678 1.25179 1.42705 1.01841 1.00509 0.97404 1.94596 1.69977 1.20192 1.56689 1.94534 1.66817 1.21204 1.52505 1.41744 1.04686 1.09098 1.54531 0.72077 1.44599 0.99195 1.04997 1.69215 0.69681 1.47988 0.93150 1.08287 1.63191 1.19798 0.96396 0.70683 0.98290 1.21502 1.47485 0.98660 0.92485 0.92290 1.25543 0.94177 0.95931 1.01218 1.69947 1.44736 1.07230 1.32915 0.85500 0.78059 0.78327 0.79557 1.20479 1.20229 1.19279 0.87111 0.86806 0.89894 0.80015 0.79382 0.78008 0.93854 0.90890 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 9.92 71.24 0.71 -1.55 16 2 C 0.20 6.19 6.93 41.09 0.28 6.48 16 3 C -0.34 -11.33 9.41 22.25 0.21 -11.12 16 4 C 0.46 15.98 8.07 133.94 1.08 17.06 16 5 N -0.71 -24.60 10.51 -311.59 -3.28 -27.88 16 6 C 0.54 18.54 7.72 86.69 0.67 19.21 16 7 O -0.58 -21.30 13.81 -5.27 -0.07 -21.38 16 8 C 0.08 2.19 7.04 40.23 0.28 2.48 16 9 C -0.13 -2.92 10.59 22.33 0.24 -2.69 16 10 C -0.07 -1.35 10.48 22.03 0.23 -1.12 16 11 C 0.04 1.00 8.07 127.85 1.03 2.03 16 12 N 0.06 1.65 4.45 -49.44 -0.22 1.43 16 13 O -0.21 -6.29 19.24 18.89 0.36 -5.93 16 14 O -0.13 -3.34 19.01 18.89 0.36 -2.98 16 15 N -0.50 -12.82 6.07 -174.91 -1.06 -13.88 16 16 H 0.44 10.93 8.96 -92.71 -0.83 10.10 16 17 N -0.46 -14.88 7.38 -54.77 -0.40 -15.28 16 18 H 0.45 12.89 8.96 -213.28 -1.91 10.97 16 19 N -0.34 -11.58 3.63 -337.50 -1.23 -12.80 16 20 C 0.27 10.24 5.71 85.63 0.49 10.72 16 21 C -0.56 -24.91 9.39 25.60 0.24 -24.67 16 22 H 0.06 2.71 7.81 -2.91 -0.02 2.68 16 23 C 0.03 1.56 5.46 84.65 0.46 2.02 16 24 N -0.91 -43.80 13.29 21.44 0.28 -43.52 16 25 Si 0.96 37.21 29.54 68.60 2.03 39.23 16 26 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 28 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 29 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 2.12 7.81 -2.39 -0.02 2.10 16 32 H 0.18 6.22 5.77 -2.91 -0.02 6.20 16 33 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.20 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.07 2.81 7.89 -2.38 -0.02 2.79 16 37 H 0.27 12.61 8.31 -92.70 -0.77 11.84 16 Total: -1.00 -56.64 343.09 1.12 -55.52 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -1.57 Total: 28.61 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.92 Total: 18.86 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -5.90 Total: -111.93 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: 0.65 Total: -30.29 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.23 kcal Total: -56.64 1.12 -55.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348794894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.954 kcal (2) G-P(sol) polarization free energy of solvation -56.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds