Wall clock time and date at job start Tue Mar 31 2020 12:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35128 * 125.54639 * 2 1 4 4 C 1.40985 * 108.23612 * 180.26134 * 3 2 1 5 5 N 1.33305 * 126.35755 * 179.97438 * 4 3 2 6 6 C 1.32907 * 119.99625 * 0.02562 * 5 4 3 7 7 O 1.21586 * 120.00344 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99864 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47381 * 59.99192 * 8 6 5 10 10 C 1.52999 * 109.46825 * 299.99686 * 8 6 5 11 11 C 1.50696 * 109.47377 * 179.97438 * 8 6 5 12 12 C 1.38426 * 122.54024 * 240.00007 * 11 8 6 13 13 C 1.33385 * 114.92184 * 179.97438 * 12 11 8 14 14 S 1.75891 * 109.59542 * 0.02562 * 13 12 11 15 15 C 1.33393 * 122.53760 * 59.70440 * 11 8 6 16 16 N 1.37286 * 107.28881 * 0.02562 * 4 3 2 17 17 H 0.96996 * 126.35193 * 179.97438 * 16 4 3 18 18 N 1.36335 * 125.55168 * 180.30610 * 2 1 3 19 19 C 1.46501 * 125.86044 * 359.73790 * 18 2 1 20 20 C 1.50694 * 109.47250 * 85.00324 * 19 18 2 21 21 H 1.08000 * 119.99848 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99990 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99916 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99923 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47483 * 89.99541 * 24 22 20 26 26 H 1.48506 * 109.46878 * 209.99623 * 24 22 20 27 27 H 1.48502 * 109.47088 * 329.99032 * 24 22 20 28 28 H 1.08994 * 109.46890 * 269.69425 * 1 2 3 29 29 H 1.08994 * 109.47119 * 29.69240 * 1 2 3 30 30 H 1.08999 * 109.46591 * 149.69300 * 1 2 3 31 31 H 1.07989 * 125.88097 * 0.24392 * 3 2 1 32 32 H 1.09002 * 109.47670 * 59.99950 * 10 8 6 33 33 H 1.09005 * 109.47222 * 180.02562 * 10 8 6 34 34 H 1.09005 * 109.47297 * 299.99456 * 10 8 6 35 35 H 1.08000 * 122.54159 * 359.95381 * 12 11 8 36 36 H 1.08003 * 125.20433 * 179.97438 * 13 12 11 37 37 H 1.07994 * 125.20711 * 0.02958 * 15 11 8 38 38 H 1.09005 * 109.46565 * 204.99889 * 19 18 2 39 39 H 1.08998 * 109.47105 * 324.99458 * 19 18 2 40 40 H 0.97006 * 119.99751 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2927 1.0995 0.0000 4 6 3.6386 0.6800 -0.0061 5 7 4.7125 1.4698 -0.0085 6 6 4.5659 2.7907 -0.0045 7 8 3.4523 3.2788 0.0009 8 6 5.7799 3.6836 -0.0066 9 1 6.3739 3.4873 -0.8992 10 6 6.6225 3.4015 1.2389 11 6 5.3428 5.1258 -0.0018 12 6 5.6818 6.0099 -1.0116 13 6 5.2138 7.2490 -0.8543 14 16 4.2898 7.3455 0.6393 15 6 4.5951 5.6457 0.9729 16 7 3.6381 -0.6929 -0.0103 17 1 4.4191 -1.2681 -0.0152 18 7 2.2998 -1.1092 -0.0059 19 6 1.8328 -2.4978 -0.0079 20 6 1.5501 -2.9307 -1.4234 21 1 1.7026 -2.2404 -2.2398 22 6 1.0958 -4.2077 -1.6760 23 7 0.9096 -5.0481 -0.6817 24 14 0.7447 -4.7441 -3.4306 25 1 1.9729 -5.3308 -4.0241 26 1 -0.3388 -5.7597 -3.4303 27 1 0.3205 -3.5682 -4.2322 28 1 -0.3633 -0.0055 1.0276 29 1 -0.3633 0.8927 -0.5090 30 1 -0.3632 -0.8872 -0.5186 31 1 1.9487 2.1231 0.0037 32 1 6.9387 2.3584 1.2351 33 1 7.5004 4.0476 1.2377 34 1 6.0286 3.5979 2.1316 35 1 6.2802 5.7186 -1.8621 36 1 5.3778 8.0681 -1.5388 37 1 4.2345 5.1061 1.8361 38 1 2.6015 -3.1401 0.4218 39 1 0.9214 -2.5754 0.5848 40 1 0.5903 -5.9467 -0.8595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348879692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:46 Heat of formation + Delta-G solvation = 90.281237 kcal Electronic energy + Delta-G solvation = -23580.155207 eV Core-core repulsion = 20103.218330 eV Total energy + Delta-G solvation = -3476.936877 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96817 -39.29935 -37.35114 -34.35891 -33.15117 -32.80205 -32.25412 -30.62636 -28.59323 -27.56347 -26.81317 -25.08856 -23.68107 -22.68901 -21.31836 -19.72546 -19.20342 -18.16663 -17.55724 -17.12215 -16.74359 -15.62957 -15.48528 -14.97703 -14.92539 -14.38809 -14.08437 -14.02906 -13.23011 -12.98837 -12.88480 -12.80811 -12.78754 -12.51943 -12.42783 -12.20297 -12.18071 -11.90921 -11.68807 -11.42313 -11.32580 -11.09347 -11.06174 -10.54596 -10.51447 -10.36134 -9.46379 -9.23641 -8.95540 -8.88244 -8.61255 -8.28882 -8.20112 -6.98224 -6.53218 -4.69358 1.19905 1.62508 1.81500 2.02476 2.12866 2.89001 2.95286 3.03146 3.11480 3.15417 4.02381 4.21973 4.35100 4.77189 4.84749 4.99917 5.06798 5.18800 5.46539 5.50809 5.54970 5.60635 5.74365 5.77976 5.83150 5.96907 6.02908 6.10333 6.23280 6.24311 6.33545 6.46061 6.49041 6.55023 6.66093 6.73053 6.76164 7.34642 7.46234 7.49283 7.64040 7.96337 8.34056 8.41155 9.01458 9.40651 10.49079 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025671 B = 0.002546 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.473675 B =10992.882191 C =11145.510179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.190 3.810 3 C -0.333 4.333 4 C 0.471 3.529 5 N -0.701 5.701 6 C 0.498 3.502 7 O -0.578 6.578 8 C -0.027 4.027 9 H 0.094 0.906 10 C -0.126 4.126 11 C -0.088 4.088 12 C -0.121 4.121 13 C -0.222 4.222 14 S 0.069 5.931 15 C -0.168 4.168 16 N -0.467 5.467 17 H 0.445 0.555 18 N -0.339 5.339 19 C 0.253 3.747 20 C -0.557 4.557 21 H 0.069 0.931 22 C 0.071 3.929 23 N -0.886 5.886 24 Si 0.909 3.091 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.269 1.269 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.183 0.817 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 14.462 3.060 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.063 3.937 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.465 5.465 6 C 0.283 3.717 7 O -0.460 6.460 8 C -0.051 4.051 9 H 0.113 0.887 10 C -0.184 4.184 11 C -0.100 4.100 12 C -0.152 4.152 13 C -0.357 4.357 14 S 0.332 5.668 15 C -0.303 4.303 16 N -0.188 5.188 17 H 0.292 0.708 18 N -0.125 5.125 19 C 0.137 3.863 20 C -0.595 4.595 21 H 0.087 0.913 22 C -0.134 4.134 23 N -0.522 5.522 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.206 1.206 27 H -0.194 1.194 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.200 0.800 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.177 0.823 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.612 15.040 3.863 16.198 hybrid contribution 0.438 -1.692 -1.759 2.480 sum 5.049 13.348 2.104 14.425 Atomic orbital electron populations 1.20655 0.86402 1.05070 1.03639 1.21374 0.94528 0.85609 0.92233 1.22270 0.91239 1.00266 1.22735 1.19213 0.91744 0.82074 0.84736 1.68692 1.27976 1.05377 1.44457 1.20519 0.88846 0.86327 0.76055 1.90538 1.27083 1.79138 1.49192 1.19556 0.95963 0.88601 1.00935 0.88745 1.21618 0.98587 1.02460 0.95721 1.18599 1.00624 0.96057 0.94678 1.20074 1.02550 0.92573 0.99981 1.25405 1.06719 1.01449 1.02124 1.84072 1.53961 1.09490 1.19301 1.25275 1.04354 0.96136 1.04557 1.44527 0.98875 1.05281 1.70131 0.70788 1.47938 0.92784 1.08239 1.63523 1.20049 0.96503 0.70152 0.99573 1.21376 1.47723 0.98774 0.91662 0.91254 1.24948 0.94226 0.95766 0.98474 1.69898 1.43984 1.06854 1.31504 0.86304 0.78391 0.78750 0.83058 1.20178 1.20638 1.19387 0.89830 0.89326 0.88978 0.80010 0.90941 0.92680 0.93067 0.84547 0.82289 0.82347 0.93090 0.91425 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.92 36.01 0.36 -1.04 16 2 C 0.19 3.36 6.93 -81.69 -0.57 2.80 16 3 C -0.33 -6.37 9.41 -39.65 -0.37 -6.75 16 4 C 0.47 9.19 8.07 -155.18 -1.25 7.94 16 5 N -0.70 -13.60 10.31 -11.59 -0.12 -13.72 16 6 C 0.50 9.45 6.94 -11.81 -0.08 9.36 16 7 O -0.58 -12.14 12.12 5.29 0.06 -12.07 16 8 C -0.03 -0.40 3.04 -92.93 -0.28 -0.69 16 9 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 10 C -0.13 -1.64 8.93 37.16 0.33 -1.31 16 11 C -0.09 -1.28 4.29 -106.25 -0.46 -1.74 16 12 C -0.12 -1.55 9.92 -41.21 -0.41 -1.96 16 13 C -0.22 -2.58 11.23 29.04 0.33 -2.25 16 14 S 0.07 0.84 23.34 -107.50 -2.51 -1.67 16 15 C -0.17 -2.41 9.25 29.04 0.27 -2.14 16 16 N -0.47 -8.42 7.37 31.32 0.23 -8.19 16 17 H 0.44 7.03 8.96 -182.56 -1.64 5.39 16 18 N -0.34 -6.40 3.63 -58.03 -0.21 -6.61 16 19 C 0.25 5.27 5.71 -5.20 -0.03 5.24 16 20 C -0.56 -13.08 9.39 -34.44 -0.32 -13.41 16 21 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 22 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -22.18 13.29 55.43 0.74 -21.45 16 24 Si 0.91 19.04 29.54 -169.99 -5.02 14.02 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.39 7.81 -51.93 -0.41 0.98 16 31 H 0.18 3.64 5.77 -52.49 -0.30 3.34 16 32 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.67 7.77 -51.93 -0.40 0.27 16 35 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.16 2.30 7.96 -52.49 -0.42 1.88 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.41 7.89 -51.93 -0.41 1.00 16 40 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -28.30 356.45 -10.54 -38.84 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.49 Total: 9.81 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.59 Total: -4.32 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.64 Total: -49.97 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.30 -10.54 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348879692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.120 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds