Wall clock time and date at job start Tue Mar 31 2020 12:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35118 * 125.55176 * 2 1 4 4 C 1.40986 * 108.23779 * 180.02562 * 3 2 1 5 5 N 1.33306 * 126.35240 * 180.02562 * 4 3 2 6 6 C 1.32910 * 120.00623 * 359.97438 * 5 4 3 7 7 O 1.21598 * 119.99322 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00573 * 180.02562 * 6 5 4 9 9 H 1.09008 * 109.46766 * 300.00189 * 8 6 5 10 10 C 1.53003 * 109.46970 * 59.99737 * 8 6 5 11 11 C 1.50699 * 109.47363 * 179.97438 * 8 6 5 12 12 C 1.38416 * 122.53754 * 119.99757 * 11 8 6 13 13 C 1.33399 * 114.91872 * 179.97438 * 12 11 8 14 14 S 1.75880 * 109.59164 * 0.02562 * 13 12 11 15 15 C 1.33387 * 122.53780 * 299.70638 * 11 8 6 16 16 N 1.37277 * 107.29147 * 0.02562 * 4 3 2 17 17 H 0.96997 * 126.35287 * 180.02562 * 16 4 3 18 18 N 1.36335 * 125.54877 * 180.02562 * 2 1 3 19 19 C 1.46505 * 125.86483 * 359.71249 * 18 2 1 20 20 C 1.50702 * 109.46962 * 85.00026 * 19 18 2 21 21 H 1.08001 * 120.00110 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99631 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00354 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99850 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47152 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47072 * 119.99920 * 24 22 20 27 27 H 1.48499 * 109.46961 * 240.00186 * 24 22 20 28 28 H 1.09004 * 109.46755 * 269.97171 * 1 2 3 29 29 H 1.08990 * 109.46998 * 29.97050 * 1 2 3 30 30 H 1.09000 * 109.47160 * 149.97530 * 1 2 3 31 31 H 1.08000 * 125.88101 * 0.02659 * 3 2 1 32 32 H 1.09003 * 109.46967 * 299.99777 * 10 8 6 33 33 H 1.08996 * 109.47053 * 60.00283 * 10 8 6 34 34 H 1.09005 * 109.46727 * 180.02562 * 10 8 6 35 35 H 1.08000 * 122.54517 * 359.97438 * 12 11 8 36 36 H 1.08001 * 125.20371 * 179.97438 * 13 12 11 37 37 H 1.08007 * 125.20245 * 0.02974 * 15 11 8 38 38 H 1.08997 * 109.47184 * 205.00107 * 19 18 2 39 39 H 1.09001 * 109.47055 * 324.99901 * 19 18 2 40 40 H 0.97006 * 120.00084 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0993 0.0000 4 6 3.6386 0.6797 -0.0006 5 7 4.7125 1.4695 -0.0003 6 6 4.5661 2.7906 0.0001 7 8 3.4523 3.2786 -0.0002 8 6 5.7801 3.6834 -0.0001 9 1 6.3776 3.4844 0.8896 10 6 6.6177 3.4048 -1.2498 11 6 5.3430 5.1256 -0.0002 12 6 5.6856 6.0074 1.0103 13 6 5.2179 7.2472 0.8568 14 16 4.2885 7.3468 -0.6330 15 6 4.6015 5.6505 -0.9768 16 7 3.6381 -0.6930 -0.0015 17 1 4.4191 -1.2683 -0.0018 18 7 2.2997 -1.1092 -0.0005 19 6 1.8327 -2.4979 0.0048 20 6 1.5495 -2.9380 -1.4084 21 1 1.7016 -2.2519 -2.2284 22 6 1.0951 -4.2163 -1.6542 23 7 0.9084 -5.0513 -0.6555 24 14 0.7447 -4.7622 -3.4061 25 1 1.0324 -3.6440 -4.3399 26 1 1.6056 -5.9240 -3.7441 27 1 -0.6831 -5.1522 -3.5267 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9488 2.1231 0.0004 32 1 6.9339 2.3616 -1.2501 33 1 6.0203 3.6037 -2.1394 34 1 7.4961 4.0503 -1.2497 35 1 6.2860 5.7139 1.8587 36 1 5.3838 8.0646 1.5429 37 1 4.2456 5.1151 -1.8447 38 1 2.6015 -3.1380 0.4376 39 1 0.9214 -2.5725 0.5982 40 1 0.5891 -5.9508 -0.8286 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348879693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:48 Heat of formation + Delta-G solvation = 90.252243 kcal Electronic energy + Delta-G solvation = -23589.460278 eV Core-core repulsion = 20112.522143 eV Total energy + Delta-G solvation = -3476.938135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96825 -39.29606 -37.35235 -34.35918 -33.15150 -32.79835 -32.25397 -30.62589 -28.58777 -27.56400 -26.81339 -25.08709 -23.68165 -22.68973 -21.31782 -19.72555 -19.20349 -18.16392 -17.55690 -17.11952 -16.74831 -15.63190 -15.49499 -14.99044 -14.89013 -14.31881 -14.23372 -13.95190 -13.23622 -12.98594 -12.86830 -12.80061 -12.78796 -12.54484 -12.44581 -12.20000 -12.12484 -11.89206 -11.77626 -11.35844 -11.30623 -11.11170 -11.08061 -10.55485 -10.51225 -10.33884 -9.45762 -9.23549 -8.96247 -8.88247 -8.61233 -8.28831 -8.20013 -6.98208 -6.53457 -4.69536 1.19909 1.62850 1.81464 2.02204 2.13103 2.88804 2.95651 3.01602 3.11551 3.16374 4.02158 4.21094 4.36124 4.76989 4.84806 4.99827 5.06931 5.18998 5.46603 5.50540 5.54882 5.61334 5.74786 5.78170 5.83167 5.97391 6.03180 6.10144 6.23470 6.24437 6.35013 6.46158 6.49172 6.55050 6.66277 6.73182 6.76170 7.34614 7.46084 7.49210 7.64061 7.96369 8.34173 8.41267 9.01328 9.40715 10.48848 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.002565 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.187174 B =10915.048630 C =11054.502958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.190 3.810 3 C -0.333 4.333 4 C 0.471 3.529 5 N -0.701 5.701 6 C 0.498 3.502 7 O -0.578 6.578 8 C -0.026 4.026 9 H 0.094 0.906 10 C -0.127 4.127 11 C -0.088 4.088 12 C -0.121 4.121 13 C -0.222 4.222 14 S 0.070 5.930 15 C -0.168 4.168 16 N -0.467 5.467 17 H 0.445 0.555 18 N -0.339 5.339 19 C 0.253 3.747 20 C -0.556 4.556 21 H 0.070 0.930 22 C 0.071 3.929 23 N -0.886 5.886 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.278 1.278 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.183 0.817 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 14.490 2.142 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.063 3.937 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.465 5.465 6 C 0.282 3.718 7 O -0.460 6.460 8 C -0.050 4.050 9 H 0.112 0.888 10 C -0.185 4.185 11 C -0.099 4.099 12 C -0.152 4.152 13 C -0.358 4.358 14 S 0.333 5.667 15 C -0.304 4.304 16 N -0.188 5.188 17 H 0.292 0.708 18 N -0.125 5.125 19 C 0.137 3.863 20 C -0.594 4.594 21 H 0.088 0.912 22 C -0.134 4.134 23 N -0.522 5.522 24 Si 0.735 3.265 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.204 1.204 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.200 0.800 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.177 0.823 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.617 15.071 1.459 15.829 hybrid contribution 0.432 -1.706 -0.098 1.763 sum 5.049 13.364 1.361 14.351 Atomic orbital electron populations 1.20655 0.86404 1.05054 1.03651 1.21369 0.94528 0.85605 0.92238 1.22270 0.91239 1.00271 1.22736 1.19211 0.91745 0.82076 0.84735 1.68690 1.27979 1.05382 1.44458 1.20525 0.88850 0.86325 0.76053 1.90541 1.27080 1.79150 1.49190 1.19555 0.95954 0.88602 1.00898 0.88762 1.21625 0.98618 1.02498 0.95711 1.18593 1.00699 0.96043 0.94608 1.20068 1.02570 0.92558 1.00002 1.25408 1.06621 1.01436 1.02285 1.84076 1.53527 1.09797 1.19301 1.25287 1.04443 0.96185 1.04454 1.44525 0.98875 1.05280 1.70132 0.70788 1.47936 0.92777 1.08234 1.63541 1.20056 0.96508 0.70156 0.99599 1.21412 1.47599 0.98753 0.91671 0.91201 1.24950 0.94246 0.95797 0.98450 1.69906 1.44017 1.06994 1.31318 0.86257 0.78336 0.78898 0.83041 1.19365 1.20482 1.20354 0.89820 0.89332 0.88985 0.80008 0.90924 0.93024 0.92680 0.84565 0.82296 0.82337 0.93080 0.91439 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.92 36.01 0.36 -1.03 16 2 C 0.19 3.36 6.93 -81.70 -0.57 2.80 16 3 C -0.33 -6.38 9.41 -39.65 -0.37 -6.75 16 4 C 0.47 9.19 8.07 -155.19 -1.25 7.94 16 5 N -0.70 -13.61 10.31 -11.59 -0.12 -13.73 16 6 C 0.50 9.45 6.94 -11.81 -0.08 9.37 16 7 O -0.58 -12.15 12.15 5.28 0.06 -12.08 16 8 C -0.03 -0.40 3.05 -92.92 -0.28 -0.68 16 9 H 0.09 1.32 8.04 -51.92 -0.42 0.90 16 10 C -0.13 -1.68 8.93 37.16 0.33 -1.35 16 11 C -0.09 -1.28 4.28 -106.25 -0.45 -1.73 16 12 C -0.12 -1.54 9.92 -41.21 -0.41 -1.95 16 13 C -0.22 -2.56 11.23 29.04 0.33 -2.24 16 14 S 0.07 0.85 23.34 -107.50 -2.51 -1.65 16 15 C -0.17 -2.44 9.27 29.04 0.27 -2.17 16 16 N -0.47 -8.42 7.37 31.32 0.23 -8.19 16 17 H 0.44 7.02 8.96 -182.55 -1.64 5.39 16 18 N -0.34 -6.40 3.63 -58.02 -0.21 -6.61 16 19 C 0.25 5.26 5.71 -5.19 -0.03 5.23 16 20 C -0.56 -13.03 9.39 -34.44 -0.32 -13.36 16 21 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 22 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -22.16 13.29 55.43 0.74 -21.43 16 24 Si 0.91 18.99 29.54 -169.99 -5.02 13.97 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 27 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.38 7.81 -51.93 -0.41 0.97 16 31 H 0.18 3.64 5.77 -52.49 -0.30 3.34 16 32 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 33 H 0.05 0.70 7.73 -51.93 -0.40 0.30 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.16 2.35 7.93 -52.48 -0.42 1.93 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.41 7.89 -51.93 -0.41 1.00 16 40 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -28.31 356.41 -10.53 -38.84 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.49 Total: 9.83 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.59 Total: -4.32 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.64 Total: -49.96 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.06 Total: -12.08 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.31 -10.53 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348879693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.093 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds