Wall clock time and date at job start Tue Mar 31 2020 12:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35118 * 125.55176 * 2 1 4 4 C 1.40986 * 108.23779 * 180.02562 * 3 2 1 5 5 N 1.33306 * 126.35240 * 180.02562 * 4 3 2 6 6 C 1.32910 * 120.00623 * 359.97438 * 5 4 3 7 7 O 1.21598 * 119.99322 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00573 * 180.02562 * 6 5 4 9 9 H 1.09008 * 109.46766 * 300.00189 * 8 6 5 10 10 C 1.53003 * 109.46970 * 59.99737 * 8 6 5 11 11 C 1.50699 * 109.47363 * 179.97438 * 8 6 5 12 12 C 1.38416 * 122.53754 * 119.99757 * 11 8 6 13 13 C 1.33399 * 114.91872 * 179.97438 * 12 11 8 14 14 S 1.75880 * 109.59164 * 0.02562 * 13 12 11 15 15 C 1.33387 * 122.53780 * 299.70638 * 11 8 6 16 16 N 1.37277 * 107.29147 * 0.02562 * 4 3 2 17 17 H 0.96997 * 126.35287 * 180.02562 * 16 4 3 18 18 N 1.36335 * 125.54877 * 180.02562 * 2 1 3 19 19 C 1.46505 * 125.86483 * 359.71249 * 18 2 1 20 20 C 1.50702 * 109.46962 * 85.00026 * 19 18 2 21 21 H 1.08001 * 120.00110 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99631 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00354 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99850 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47152 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47072 * 119.99920 * 24 22 20 27 27 H 1.48499 * 109.46961 * 240.00186 * 24 22 20 28 28 H 1.09004 * 109.46755 * 269.97171 * 1 2 3 29 29 H 1.08990 * 109.46998 * 29.97050 * 1 2 3 30 30 H 1.09000 * 109.47160 * 149.97530 * 1 2 3 31 31 H 1.08000 * 125.88101 * 0.02659 * 3 2 1 32 32 H 1.09003 * 109.46967 * 299.99777 * 10 8 6 33 33 H 1.08996 * 109.47053 * 60.00283 * 10 8 6 34 34 H 1.09005 * 109.46727 * 180.02562 * 10 8 6 35 35 H 1.08000 * 122.54517 * 359.97438 * 12 11 8 36 36 H 1.08001 * 125.20371 * 179.97438 * 13 12 11 37 37 H 1.08007 * 125.20245 * 0.02974 * 15 11 8 38 38 H 1.08997 * 109.47184 * 205.00107 * 19 18 2 39 39 H 1.09001 * 109.47055 * 324.99901 * 19 18 2 40 40 H 0.97006 * 120.00084 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0993 0.0000 4 6 3.6386 0.6797 -0.0006 5 7 4.7125 1.4695 -0.0003 6 6 4.5661 2.7906 0.0001 7 8 3.4523 3.2786 -0.0002 8 6 5.7801 3.6834 -0.0001 9 1 6.3776 3.4844 0.8896 10 6 6.6177 3.4048 -1.2498 11 6 5.3430 5.1256 -0.0002 12 6 5.6856 6.0074 1.0103 13 6 5.2179 7.2472 0.8568 14 16 4.2885 7.3468 -0.6330 15 6 4.6015 5.6505 -0.9768 16 7 3.6381 -0.6930 -0.0015 17 1 4.4191 -1.2683 -0.0018 18 7 2.2997 -1.1092 -0.0005 19 6 1.8327 -2.4979 0.0048 20 6 1.5495 -2.9380 -1.4084 21 1 1.7016 -2.2519 -2.2284 22 6 1.0951 -4.2163 -1.6542 23 7 0.9084 -5.0513 -0.6555 24 14 0.7447 -4.7622 -3.4061 25 1 1.0324 -3.6440 -4.3399 26 1 1.6056 -5.9240 -3.7441 27 1 -0.6831 -5.1522 -3.5267 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9488 2.1231 0.0004 32 1 6.9339 2.3616 -1.2501 33 1 6.0203 3.6037 -2.1394 34 1 7.4961 4.0503 -1.2497 35 1 6.2860 5.7139 1.8587 36 1 5.3838 8.0646 1.5429 37 1 4.2456 5.1151 -1.8447 38 1 2.6015 -3.1380 0.4376 39 1 0.9214 -2.5725 0.5982 40 1 0.5891 -5.9508 -0.8286 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348879693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:48 Heat of formation + Delta-G solvation = 75.036255 kcal Electronic energy + Delta-G solvation = -23590.120093 eV Core-core repulsion = 20112.522143 eV Total energy + Delta-G solvation = -3477.597949 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.45149 -40.59015 -38.55891 -36.00297 -34.77112 -33.96704 -33.69393 -32.21267 -29.63792 -28.85633 -28.47434 -26.22511 -25.19552 -24.09800 -22.64058 -21.13618 -20.50770 -19.31306 -18.89025 -18.61196 -18.27851 -17.06235 -16.88580 -16.58565 -16.29784 -15.68056 -15.54278 -15.28421 -14.53283 -14.34442 -14.30288 -14.22220 -13.91467 -13.73218 -13.69304 -13.54272 -13.23306 -13.18365 -13.15282 -12.80581 -12.76303 -12.41807 -12.32339 -12.21928 -11.99154 -11.53154 -11.07755 -10.80257 -10.67296 -10.32981 -9.81772 -9.57246 -9.20765 -8.60948 -8.28471 -6.57789 0.15209 0.20189 0.54498 0.84819 1.14950 1.35868 1.41343 1.47902 1.51562 1.85959 2.29216 2.73760 2.90270 2.93667 3.58054 3.67828 3.96258 4.15460 4.21981 4.28296 4.39832 4.48979 4.56308 4.72613 4.74230 4.78155 4.82855 4.90456 4.92744 4.99672 5.05066 5.11323 5.24529 5.30538 5.35175 5.49685 5.56259 5.68180 5.69296 5.98554 6.13296 6.42429 6.62077 6.88991 7.16098 7.91848 8.65097 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.002565 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.187174 B =10915.048630 C =11054.502958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.197 3.803 3 C -0.347 4.347 4 C 0.456 3.544 5 N -0.707 5.707 6 C 0.486 3.514 7 O -0.603 6.603 8 C -0.023 4.023 9 H 0.107 0.893 10 C -0.119 4.119 11 C -0.097 4.097 12 C -0.139 4.139 13 C -0.211 4.211 14 S 0.090 5.910 15 C -0.196 4.196 16 N -0.463 5.463 17 H 0.453 0.547 18 N -0.345 5.345 19 C 0.267 3.733 20 C -0.562 4.562 21 H 0.057 0.943 22 C 0.033 3.967 23 N -0.912 5.912 24 Si 0.963 3.037 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.272 1.272 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.174 0.826 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.156 0.844 36 H 0.191 0.809 37 H 0.144 0.856 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 15.532 2.425 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.070 3.930 3 C -0.379 4.379 4 C 0.208 3.792 5 N -0.471 5.471 6 C 0.272 3.728 7 O -0.487 6.487 8 C -0.047 4.047 9 H 0.125 0.875 10 C -0.177 4.177 11 C -0.110 4.110 12 C -0.169 4.169 13 C -0.346 4.346 14 S 0.353 5.647 15 C -0.331 4.331 16 N -0.186 5.186 17 H 0.301 0.699 18 N -0.132 5.132 19 C 0.150 3.850 20 C -0.600 4.600 21 H 0.075 0.925 22 C -0.170 4.170 23 N -0.549 5.549 24 Si 0.788 3.212 25 H -0.198 1.198 26 H -0.204 1.204 27 H -0.197 1.197 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.191 0.809 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.174 0.826 36 H 0.208 0.792 37 H 0.162 0.838 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.768 16.118 1.742 16.899 hybrid contribution 0.382 -1.964 -0.166 2.008 sum 5.151 14.154 1.576 15.144 Atomic orbital electron populations 1.20821 0.83715 1.05574 1.05401 1.21907 0.96047 0.84610 0.90434 1.22190 0.91480 1.00241 1.23963 1.19453 0.92230 0.82549 0.84988 1.68795 1.28001 1.05761 1.44587 1.21262 0.89851 0.86483 0.75195 1.90517 1.28393 1.79474 1.50278 1.19573 0.94547 0.88422 1.02152 0.87526 1.21569 0.99006 1.02635 0.94474 1.18733 1.01013 0.95903 0.95303 1.20259 1.03588 0.92720 1.00338 1.25837 1.04910 1.01916 1.01939 1.83971 1.53323 1.07725 1.19707 1.25315 1.05420 0.97873 1.04519 1.44507 0.98936 1.05025 1.70087 0.69859 1.47832 0.93299 1.08017 1.64008 1.19744 0.96254 0.70805 0.98224 1.21537 1.47316 0.98650 0.92483 0.92499 1.25566 0.94168 0.95919 1.01310 1.69964 1.44867 1.07356 1.32730 0.85425 0.78325 0.78137 0.79351 1.19821 1.20411 1.19710 0.87330 0.87288 0.89837 0.80893 0.91507 0.94001 0.90252 0.82619 0.79171 0.83775 0.93893 0.91250 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.58 9.92 71.24 0.71 -1.87 16 2 C 0.20 6.87 6.93 41.14 0.29 7.16 16 3 C -0.35 -13.35 9.41 22.22 0.21 -13.14 16 4 C 0.46 17.98 8.07 133.83 1.08 19.06 16 5 N -0.71 -27.71 10.31 -309.87 -3.19 -30.91 16 6 C 0.49 18.63 6.94 87.94 0.61 19.24 16 7 O -0.60 -25.82 12.15 -4.02 -0.05 -25.86 16 8 C -0.02 -0.70 3.05 -12.29 -0.04 -0.73 16 9 H 0.11 2.87 8.04 -2.38 -0.02 2.85 16 10 C -0.12 -3.10 8.93 71.98 0.64 -2.46 16 11 C -0.10 -2.76 4.28 -20.92 -0.09 -2.85 16 12 C -0.14 -3.26 9.92 21.22 0.21 -3.05 16 13 C -0.21 -4.32 11.23 66.72 0.75 -3.57 16 14 S 0.09 2.06 23.34 -56.49 -1.32 0.74 16 15 C -0.20 -5.66 9.27 66.72 0.62 -5.04 16 16 N -0.46 -16.78 7.37 -54.81 -0.40 -17.18 16 17 H 0.45 14.38 8.96 -213.28 -1.91 12.47 16 18 N -0.35 -12.98 3.63 -337.49 -1.23 -14.20 16 19 C 0.27 11.03 5.71 85.63 0.49 11.52 16 20 C -0.56 -26.17 9.39 25.60 0.24 -25.92 16 21 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 22 C 0.03 1.56 5.46 84.65 0.46 2.02 16 23 N -0.91 -45.18 13.29 21.45 0.28 -44.90 16 24 Si 0.96 38.47 29.54 68.60 2.03 40.50 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 28 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.08 2.40 7.81 -2.39 -0.02 2.38 16 31 H 0.17 7.04 5.77 -2.91 -0.02 7.03 16 32 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 33 H 0.04 1.15 7.73 -2.39 -0.02 1.13 16 34 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.14 4.46 7.93 -2.91 -0.02 4.44 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.87 7.89 -2.39 -0.02 2.85 16 40 H 0.27 12.89 8.31 -92.70 -0.77 12.12 16 Total: -1.00 -59.89 356.41 1.45 -58.43 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.84 Total: 33.01 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.18 Total: 0.36 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -4.54 Total: -107.19 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -59.89 1.45 -58.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348879693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.468 kcal (2) G-P(sol) polarization free energy of solvation -59.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds