Wall clock time and date at job start Tue Mar 31 2020 12:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38353 * 119.85290 * 2 1 4 4 C 1.37958 * 120.14853 * 179.97438 * 3 2 1 5 5 C 1.39581 * 119.84769 * 359.97438 * 4 3 2 6 6 C 1.47848 * 120.14254 * 179.97438 * 5 4 3 7 7 N 1.31265 * 126.46108 * 339.90271 * 6 5 4 8 8 N 1.28517 * 109.95593 * 179.82158 * 7 6 5 9 9 C 1.31439 * 110.07975 * 0.45820 * 8 7 6 10 10 S 1.76196 * 126.38429 * 179.74721 * 9 8 7 11 11 C 1.80996 * 99.99866 * 359.97047 * 10 9 8 12 12 C 1.53004 * 109.47483 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47104 * 305.00617 * 12 11 10 14 14 O 1.42900 * 109.46874 * 64.99830 * 12 11 10 15 15 C 1.50691 * 109.47734 * 185.00459 * 12 11 10 16 16 H 1.08005 * 119.99514 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00394 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99660 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99838 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47522 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46870 * 120.00070 * 19 17 15 22 22 H 1.48510 * 109.46895 * 239.99585 * 19 17 15 23 23 N 1.36566 * 107.23446 * 359.72274 * 9 8 7 24 24 C 1.46502 * 127.17182 * 179.97438 * 23 9 8 25 25 C 1.39576 * 119.71467 * 0.25397 * 5 4 3 26 26 C 1.37961 * 119.84799 * 359.49149 * 25 5 4 27 27 H 1.08996 * 109.47577 * 90.00311 * 1 2 3 28 28 H 1.09006 * 109.46711 * 209.99843 * 1 2 3 29 29 H 1.08994 * 109.47061 * 329.99265 * 1 2 3 30 30 H 1.08004 * 119.92719 * 359.95618 * 3 2 1 31 31 H 1.07997 * 120.08211 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47379 * 300.00234 * 11 10 9 33 33 H 1.09010 * 109.46855 * 60.00401 * 11 10 9 34 34 H 0.96699 * 113.99697 * 60.00245 * 14 12 11 35 35 H 0.97003 * 119.99749 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47563 * 263.63375 * 24 23 9 37 37 H 1.08996 * 109.47006 * 23.63553 * 24 23 9 38 38 H 1.09002 * 109.46921 * 143.63341 * 24 23 9 39 39 H 1.07998 * 120.07161 * 179.72321 * 25 5 4 40 40 H 1.08001 * 119.92368 * 180.22831 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 0.0000 0.0016 6 6 5.7547 0.0000 0.0016 7 7 6.5347 0.9911 -0.3620 8 7 7.7669 0.6497 -0.2327 9 6 7.8489 -0.5843 0.2123 10 16 9.3299 -1.4822 0.5367 11 6 10.5598 -0.2332 0.0858 12 6 11.9647 -0.8029 0.2924 13 1 12.0645 -1.1612 1.3170 14 8 12.1770 -1.8871 -0.6140 15 6 12.9865 0.2744 0.0352 16 1 12.6660 1.2662 -0.2477 17 6 14.3306 -0.0063 0.1601 18 7 14.7209 -1.2141 0.5042 19 14 15.5972 1.3290 -0.1594 20 1 14.9050 2.5896 -0.5293 21 1 16.4049 1.5488 1.0672 22 1 16.4888 0.9099 -1.2706 23 7 6.5724 -1.0407 0.3770 24 6 6.1597 -2.3632 0.8535 25 6 3.5753 -1.2070 -0.0032 26 6 2.1957 -1.2000 0.0016 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6521 2.1332 -0.0007 31 1 4.1117 2.1444 0.0010 32 1 10.4298 0.0437 -0.9603 33 1 10.4296 0.6482 0.7139 34 1 12.1033 -1.6406 -1.5461 35 1 15.6665 -1.4115 0.5924 36 1 5.9478 -3.0072 -0.0001 37 1 6.9608 -2.8011 1.4489 38 1 5.2635 -2.2653 1.4661 39 1 4.1118 -2.1443 -0.0069 40 1 1.6522 -2.1333 0.0016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352147207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:01 Heat of formation + Delta-G solvation = 45.331241 kcal Electronic energy + Delta-G solvation = -22918.731215 eV Core-core repulsion = 19439.845159 eV Total energy + Delta-G solvation = -3478.886055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.71213 -39.52351 -35.99078 -35.18015 -33.67002 -32.21585 -31.32513 -30.50949 -29.69605 -27.92083 -27.02969 -25.37290 -23.41945 -22.73832 -22.08519 -21.10600 -20.69947 -17.91593 -17.26195 -16.55966 -16.44305 -16.13983 -15.67513 -15.20786 -14.67248 -14.40883 -14.23144 -14.16878 -13.95935 -13.91124 -13.61918 -13.58951 -13.06707 -12.64942 -12.53887 -12.46487 -11.73029 -11.64851 -11.57976 -11.33914 -11.26499 -10.95511 -10.93179 -10.59153 -10.28544 -10.21607 -10.13219 -9.92381 -9.30972 -9.23143 -8.71876 -8.66253 -8.36231 -7.24161 -6.09992 -4.29220 0.55702 1.05403 1.38153 1.88251 2.51676 2.73621 2.85443 3.24880 3.33397 3.38369 3.51067 4.02405 4.34468 4.34933 4.47856 4.51767 4.63294 4.80633 4.84069 5.01657 5.12670 5.17542 5.19335 5.20172 5.29423 5.41414 5.56821 5.65940 5.76361 5.83131 5.88151 5.99733 6.05314 6.16295 6.20633 6.23099 6.56261 6.66307 6.68006 7.49157 7.75029 7.99881 8.68706 8.72485 9.23788 9.46783 10.94206 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.036779 B = 0.002346 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.116988 B =11933.047498 C =12571.267562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.117 4.117 4 C -0.073 4.073 5 C -0.011 4.011 6 C 0.202 3.798 7 N -0.268 5.268 8 N -0.292 5.292 9 C 0.172 3.828 10 S -0.007 6.007 11 C -0.111 4.111 12 C 0.244 3.756 13 H 0.067 0.933 14 O -0.560 6.560 15 C -0.567 4.567 16 H 0.062 0.938 17 C 0.080 3.920 18 N -0.857 5.857 19 Si 0.895 3.105 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 N -0.466 5.466 24 C 0.069 3.931 25 C -0.111 4.111 26 C -0.118 4.118 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.350 0.650 35 H 0.262 0.738 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.107 -2.496 0.676 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.135 4.135 4 C -0.093 4.093 5 C -0.013 4.013 6 C -0.064 4.064 7 N -0.109 5.109 8 N -0.137 5.137 9 C -0.201 4.201 10 S 0.224 5.776 11 C -0.260 4.260 12 C 0.184 3.816 13 H 0.085 0.915 14 O -0.363 6.363 15 C -0.607 4.607 16 H 0.081 0.919 17 C -0.127 4.127 18 N -0.492 5.492 19 Si 0.722 3.278 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.160 5.160 24 C -0.074 4.074 25 C -0.131 4.131 26 C -0.136 4.136 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.194 0.806 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.145 0.855 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.249 -2.737 1.209 26.419 hybrid contribution 0.130 1.021 -0.648 1.216 sum -26.119 -1.715 0.560 26.181 Atomic orbital electron populations 1.20828 0.90932 1.02968 1.02545 1.20083 0.96320 0.93142 0.98442 1.21007 0.93619 0.97879 1.01043 1.21223 0.93874 0.97465 0.96773 1.17455 0.85705 0.94496 1.03689 1.22845 0.93000 0.85742 1.04775 1.74248 0.96561 1.22638 1.17474 1.74779 1.11346 1.08385 1.19194 1.27480 0.91154 0.96712 1.04783 1.85860 0.89192 1.20429 1.82143 1.24938 0.97161 0.98678 1.05230 1.19263 0.84318 0.86423 0.91611 0.91511 1.86581 1.94327 1.37621 1.17743 1.21526 0.90955 0.97121 1.51068 0.91934 1.25038 0.98564 0.95365 0.93709 1.70085 1.15810 1.19167 1.44170 0.86505 0.81256 0.82007 0.78018 1.19488 1.20771 1.20775 1.46304 1.04984 1.13855 1.50829 1.22307 1.03179 0.80701 1.01215 1.21384 0.94608 0.97055 1.00067 1.20901 0.93429 0.97847 1.01387 0.90919 0.91409 0.91332 0.85303 0.84575 0.89495 0.88863 0.80609 0.92813 0.89621 0.88282 0.88802 0.85473 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.08 -0.59 5.89 -104.54 -0.62 -1.21 16 3 C -0.12 -0.99 9.68 -39.64 -0.38 -1.37 16 4 C -0.07 -0.79 9.71 -39.18 -0.38 -1.17 16 5 C -0.01 -0.13 5.87 -104.97 -0.62 -0.74 16 6 C 0.20 3.10 7.69 -153.75 -1.18 1.92 16 7 N -0.27 -4.99 12.03 32.59 0.39 -4.59 16 8 N -0.29 -5.86 11.59 30.71 0.36 -5.50 16 9 C 0.17 3.05 8.07 -88.18 -0.71 2.34 16 10 S -0.01 -0.12 21.45 -107.50 -2.31 -2.42 16 11 C -0.11 -2.31 4.83 37.16 0.18 -2.13 16 12 C 0.24 5.99 2.82 -27.89 -0.08 5.91 16 13 H 0.07 1.79 8.14 -51.93 -0.42 1.36 16 14 O -0.56 -13.85 12.48 -35.23 -0.44 -14.29 16 15 C -0.57 -15.21 8.76 -34.44 -0.30 -15.51 16 16 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 17 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 18 N -0.86 -24.70 12.84 55.43 0.71 -23.99 16 19 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 N -0.47 -6.76 3.24 -121.46 -0.39 -7.15 16 24 C 0.07 0.64 9.31 59.85 0.56 1.20 16 25 C -0.11 -1.02 8.72 -39.18 -0.34 -1.36 16 26 C -0.12 -0.89 9.68 -39.64 -0.38 -1.27 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 29 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.14 1.51 7.99 -52.49 -0.42 1.09 16 32 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 33 H 0.09 1.98 8.14 -51.91 -0.42 1.56 16 34 H 0.35 7.69 9.04 45.56 0.41 8.11 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.09 0.63 7.71 -51.93 -0.40 0.23 16 37 H 0.10 0.89 7.67 -51.93 -0.40 0.49 16 38 H 0.09 0.66 6.67 -51.93 -0.35 0.31 16 39 H 0.13 0.95 5.07 -52.49 -0.27 0.68 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -33.17 355.95 -9.66 -42.84 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.34 Total: 5.35 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -3.99 Total: -11.51 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.07 Total: -41.24 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.44 Total: -14.29 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.31 Total: -2.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.17 -9.66 -42.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352147207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.171 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds