Wall clock time and date at job start Tue Mar 31 2020 12:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37983 * 120.07639 * 2 1 4 4 C 1.38335 * 120.14807 * 180.25211 * 3 2 1 5 5 C 1.38380 * 120.29244 * 359.74436 * 4 3 2 6 6 C 1.37936 * 120.14556 * 359.97438 * 5 4 3 7 7 C 1.39557 * 120.07616 * 179.72312 * 2 1 3 8 8 C 1.47837 * 120.14435 * 0.02562 * 7 2 1 9 9 N 1.31270 * 126.46575 * 310.86942 * 8 7 2 10 10 N 1.28506 * 109.96269 * 179.77073 * 9 8 7 11 11 C 1.31445 * 110.07836 * 0.41130 * 10 9 8 12 12 S 1.76195 * 126.38520 * 179.86174 * 11 10 9 13 13 C 1.81000 * 99.99973 * 359.68706 * 12 11 10 14 14 C 1.52997 * 109.47388 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.46885 * 304.99302 * 14 13 12 16 16 O 1.42899 * 109.47349 * 64.99776 * 14 13 12 17 17 C 1.50702 * 109.47113 * 184.99994 * 14 13 12 18 18 H 1.08004 * 120.00382 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99949 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00371 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00210 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47235 * 270.00505 * 21 19 17 23 23 H 1.48501 * 109.47216 * 29.99863 * 21 19 17 24 24 H 1.48499 * 109.47613 * 150.00174 * 21 19 17 25 25 N 1.36570 * 107.23535 * 359.59498 * 11 10 9 26 26 C 1.46492 * 127.17312 * 180.21985 * 25 11 10 27 27 H 1.09002 * 109.46969 * 270.27460 * 1 2 3 28 28 H 1.08993 * 109.47276 * 30.27881 * 1 2 3 29 29 H 1.08997 * 109.46930 * 150.27652 * 1 2 3 30 30 H 1.08001 * 119.92652 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.85364 * 179.72243 * 4 3 2 32 32 H 1.08002 * 119.93069 * 179.97438 * 5 4 3 33 33 H 1.07993 * 120.07720 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47196 * 60.00122 * 13 12 11 35 35 H 1.09002 * 109.47383 * 300.00173 * 13 12 11 36 36 H 0.96694 * 113.99576 * 60.00600 * 16 14 13 37 37 H 0.97002 * 119.99550 * 359.97438 * 20 19 17 38 38 H 1.08995 * 109.47357 * 95.31618 * 26 25 11 39 39 H 1.09003 * 109.47050 * 215.31580 * 26 25 11 40 40 H 1.09006 * 109.47157 * 335.31358 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2813 0.0018 -0.0052 6 6 3.6023 -1.1988 0.0006 7 6 2.2063 -1.2077 0.0058 8 6 1.4721 -2.4908 0.0115 9 7 0.4847 -2.8212 0.8109 10 7 0.0770 -4.0087 0.5370 11 6 0.7853 -4.5128 -0.4488 12 16 0.5923 -6.1117 -1.1635 13 6 -0.7728 -6.7432 -0.1567 14 6 -1.1258 -8.1618 -0.6082 15 1 -1.3387 -8.1605 -1.6772 16 8 -0.0253 -9.0339 -0.3427 17 6 -2.3398 -8.6413 0.1451 18 1 -2.8121 -7.9987 0.8734 19 6 -2.8475 -9.9004 -0.0954 20 7 -2.2721 -10.6833 -0.9818 21 14 -4.3518 -10.4951 0.8388 22 1 -3.9224 -11.1774 2.0859 23 1 -5.2128 -9.3345 1.1810 24 1 -5.1164 -11.4460 -0.0076 25 7 1.6949 -3.5641 -0.8200 26 6 2.6989 -3.6678 -1.8818 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8874 -0.5181 29 1 -0.3633 -0.8924 -0.5095 30 1 1.6585 2.1294 -0.0004 31 1 4.1182 2.1331 -0.0098 32 1 5.3613 0.0100 -0.0098 33 1 4.1493 -2.1300 0.0002 34 1 -1.6421 -6.0966 -0.2765 35 1 -0.4740 -6.7597 0.8914 36 1 0.2199 -9.0845 0.5913 37 1 -1.4907 -10.3746 -1.4667 38 1 2.3067 -3.2248 -2.7972 39 1 3.6027 -3.1384 -1.5801 40 1 2.9343 -4.7174 -2.0580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352165262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:02 Heat of formation + Delta-G solvation = 19.569000 kcal Electronic energy + Delta-G solvation = -23347.518585 eV Core-core repulsion = 19867.515395 eV Total energy + Delta-G solvation = -3480.003190 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.98995 -40.22603 -38.33578 -36.20411 -34.34753 -34.16359 -33.08627 -31.82518 -30.50879 -28.78056 -27.92929 -26.90128 -24.69315 -23.93556 -23.38168 -22.68227 -21.53805 -19.57844 -19.07396 -17.83383 -17.67917 -17.23500 -16.84917 -16.44023 -16.36605 -16.03855 -15.68433 -15.54935 -14.83476 -14.80363 -14.53912 -14.51586 -14.25443 -13.91604 -13.74633 -13.52032 -13.26072 -13.05966 -12.89773 -12.62724 -12.34198 -12.27707 -12.14158 -12.07256 -11.92968 -11.63817 -11.45239 -11.33456 -11.18647 -10.67523 -10.27051 -9.89012 -9.68479 -8.75556 -8.66448 -6.52679 -0.22124 -0.03642 0.35617 0.62291 0.97955 1.47422 1.54676 1.57940 1.61835 1.80590 2.54474 2.69478 3.08876 3.11540 3.52409 3.78255 3.81204 3.81365 3.96215 3.99368 4.04963 4.08209 4.15031 4.34462 4.38045 4.44768 4.54457 4.66381 4.68466 4.73387 4.74833 4.77500 4.95755 5.19138 5.21812 5.35060 5.46000 5.50330 5.63105 5.71642 5.94238 6.06604 6.51252 7.03243 7.37777 7.41078 8.72001 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.002619 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.859287 B =10689.960922 C =11348.444752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.058 4.058 3 C -0.120 4.120 4 C -0.093 4.093 5 C -0.120 4.120 6 C -0.100 4.100 7 C -0.047 4.047 8 C 0.228 3.772 9 N -0.305 5.305 10 N -0.331 5.331 11 C 0.151 3.849 12 S 0.024 5.976 13 C -0.096 4.096 14 C 0.232 3.768 15 H 0.038 0.962 16 O -0.582 6.582 17 C -0.655 4.655 18 H 0.052 0.948 19 C -0.011 4.011 20 N -0.915 5.915 21 Si 1.118 2.882 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.281 1.281 25 N -0.458 5.458 26 C 0.060 3.940 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.368 0.632 37 H 0.270 0.730 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.927 25.067 -1.713 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.111 4.111 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.050 4.050 8 C -0.041 4.041 9 N -0.145 5.145 10 N -0.176 5.176 11 C -0.224 4.224 12 S 0.254 5.746 13 C -0.245 4.245 14 C 0.172 3.828 15 H 0.056 0.944 16 O -0.388 6.388 17 C -0.694 4.694 18 H 0.070 0.930 19 C -0.214 4.214 20 N -0.550 5.550 21 Si 0.939 3.061 22 H -0.197 1.197 23 H -0.199 1.199 24 H -0.207 1.207 25 N -0.151 5.151 26 C -0.080 4.080 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.170 0.830 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.150 0.850 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.215 0.785 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.465 23.272 -2.039 27.477 hybrid contribution 0.942 1.423 0.458 1.767 sum 15.407 24.695 -1.581 29.150 Atomic orbital electron populations 1.20756 0.91103 1.02125 1.02665 1.20095 0.96345 0.92202 0.97352 1.21293 0.95110 0.97049 1.00370 1.21740 0.93786 0.99625 0.95963 1.21408 1.01626 0.91112 0.99601 1.21346 0.91304 1.00188 0.99090 1.17520 0.92994 0.86390 1.08056 1.23396 0.97813 0.91019 0.91836 1.74258 1.11068 1.06857 1.22295 1.74674 1.24090 1.04509 1.14294 1.27203 0.94695 0.99723 1.00735 1.85431 1.45885 0.98672 1.44631 1.24267 0.97350 1.01415 1.01510 1.19145 0.85389 0.82631 0.95623 0.94391 1.86438 1.52721 1.69007 1.30647 1.22676 1.15294 1.04168 1.27298 0.93009 1.27270 1.04081 0.93623 0.96400 1.70754 1.21862 1.39042 1.23322 0.82926 0.72157 0.75908 0.75071 1.19714 1.19855 1.20671 1.46648 1.28344 1.10894 1.29228 1.22609 0.90617 1.06354 0.88455 0.91033 0.89143 0.94631 0.83020 0.82210 0.82377 0.85042 0.89932 0.89886 0.78466 0.91905 0.88110 0.86250 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 9.19 71.23 0.65 -1.73 16 2 C -0.06 -1.16 5.91 -19.61 -0.12 -1.28 16 3 C -0.12 -1.57 9.69 22.23 0.22 -1.36 16 4 C -0.09 -0.88 10.04 22.33 0.22 -0.65 16 5 C -0.12 -1.25 10.03 22.23 0.22 -1.02 16 6 C -0.10 -1.59 8.71 22.53 0.20 -1.39 16 7 C -0.05 -1.06 5.68 -20.09 -0.11 -1.17 16 8 C 0.23 6.85 6.36 136.20 0.87 7.71 16 9 N -0.30 -11.52 11.14 -50.79 -0.57 -12.09 16 10 N -0.33 -13.61 11.59 -56.75 -0.66 -14.27 16 11 C 0.15 5.43 8.07 179.49 1.45 6.88 16 12 S 0.02 0.88 21.47 -56.49 -1.21 -0.34 16 13 C -0.10 -4.15 4.83 71.98 0.35 -3.81 16 14 C 0.23 11.65 2.42 29.85 0.07 11.72 16 15 H 0.04 2.08 8.01 -2.38 -0.02 2.06 16 16 O -0.58 -28.64 11.77 -148.98 -1.75 -30.40 16 17 C -0.66 -36.35 8.76 25.60 0.22 -36.13 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 19 C -0.01 -0.60 5.40 84.65 0.46 -0.14 16 20 N -0.91 -55.47 13.53 21.45 0.29 -55.18 16 21 Si 1.12 49.78 29.90 68.60 2.05 51.83 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 N -0.46 -13.00 3.24 -538.19 -1.74 -14.74 16 26 C 0.06 1.04 10.89 127.77 1.39 2.43 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 29 H 0.03 0.98 6.73 -2.39 -0.02 0.96 16 30 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 32 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 33 H 0.13 1.78 6.90 -2.91 -0.02 1.76 16 34 H 0.08 3.72 8.14 -2.39 -0.02 3.70 16 35 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.37 16.27 9.04 -74.06 -0.67 15.60 16 37 H 0.27 16.78 6.47 -92.71 -0.60 16.18 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.12 1.36 5.83 -2.39 -0.01 1.35 16 40 H 0.10 1.69 7.70 -2.38 -0.02 1.67 16 Total: -1.00 -74.82 353.17 3.08 -71.74 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.57 Total: 23.39 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 6.09 Total: -19.94 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -2.67 Total: -96.28 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.75 Total: -30.40 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -1.21 Total: -0.34 kcal Total: -74.82 3.08 -71.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352165262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.310 kcal (2) G-P(sol) polarization free energy of solvation -74.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds