Wall clock time and date at job start Tue Mar 31 2020 12:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34223 * 125.76966 * 2 1 4 4 N 1.39118 * 107.11243 * 179.97438 * 3 2 1 5 5 C 1.36237 * 139.29464 * 179.69012 * 4 3 2 6 6 C 1.33010 * 116.11177 * 179.97438 * 5 4 3 7 7 C 1.46870 * 125.22748 * 180.13453 * 6 5 4 8 8 O 1.21666 * 119.99681 * 352.00733 * 7 6 5 9 9 N 1.34770 * 119.99820 * 172.00590 * 7 6 5 10 10 C 1.46500 * 120.00305 * 2.03800 * 9 7 6 11 11 C 1.50700 * 109.46986 * 82.37792 * 10 9 7 12 12 H 1.07999 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99990 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00403 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99783 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47442 * 60.00516 * 15 13 11 17 17 H 1.48502 * 109.46848 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47134 * 299.99981 * 15 13 11 19 19 C 1.46504 * 120.00026 * 182.03933 * 9 7 6 20 20 C 1.53001 * 109.47006 * 94.95355 * 19 9 7 21 21 C 1.53000 * 117.49841 * 247.77764 * 20 19 9 22 22 C 1.53001 * 117.49873 * 179.11860 * 20 19 9 23 23 S 1.75812 * 109.54414 * 0.35160 * 6 5 4 24 24 C 1.35445 * 106.45786 * 0.02562 * 4 3 2 25 25 N 1.32268 * 108.78106 * 359.97438 * 24 4 3 26 26 H 1.09001 * 109.47098 * 89.99425 * 1 2 3 27 27 H 1.08994 * 109.46899 * 209.99475 * 1 2 3 28 28 H 1.08997 * 109.47155 * 329.99770 * 1 2 3 29 29 H 1.08006 * 126.44234 * 359.97438 * 3 2 1 30 30 H 1.08003 * 121.94229 * 0.02562 * 5 4 3 31 31 H 1.09004 * 109.47612 * 202.37971 * 10 9 7 32 32 H 1.08999 * 109.47164 * 322.37978 * 10 9 7 33 33 H 0.96992 * 120.00589 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47467 * 214.95243 * 19 9 7 35 35 H 1.08994 * 109.46717 * 334.95579 * 19 9 7 36 36 H 1.09002 * 115.54743 * 33.44543 * 20 19 9 37 37 H 1.09002 * 117.50127 * 0.02562 * 21 20 19 38 38 H 1.09007 * 117.49949 * 145.02366 * 21 20 19 39 39 H 1.09004 * 117.49446 * 214.98063 * 22 20 19 40 40 H 1.08999 * 117.49634 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.0891 0.0000 4 7 3.6097 0.6440 0.0006 5 6 4.8724 1.1554 -0.0039 6 6 5.8634 0.2682 0.0001 7 6 7.2948 0.5969 -0.0007 8 8 7.6542 1.7494 -0.1518 9 7 8.2101 -0.3782 0.1659 10 6 7.7794 -1.7717 0.3031 11 6 7.5329 -2.3581 -1.0631 12 1 7.6826 -1.7534 -1.9453 13 6 7.1174 -3.6669 -1.1868 14 7 6.9355 -4.4035 -0.1126 15 14 6.8126 -4.3939 -2.8803 16 1 8.0655 -4.3388 -3.6756 17 1 6.3758 -5.8064 -2.7413 18 1 5.7535 -3.6145 -3.5704 19 6 9.6360 -0.0446 0.2098 20 6 10.0773 0.1170 1.6659 21 6 10.4741 1.5191 2.1324 22 6 11.5483 0.4483 1.9256 23 16 5.1964 -1.3585 0.0001 24 6 3.5577 -0.7094 0.0003 25 7 2.2900 -1.0869 0.0002 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8899 0.5138 29 1 1.9617 2.1175 -0.0004 30 1 5.0580 2.2194 -0.0095 31 1 8.5566 -2.3442 0.8094 32 1 6.8599 -1.8119 0.8870 33 1 6.6428 -5.3241 -0.1996 34 1 10.2109 -0.8441 -0.2574 35 1 9.8076 0.8881 -0.3274 36 1 9.5723 -0.5285 2.3845 37 1 10.4203 2.3265 1.4021 38 1 10.2305 1.7959 3.1582 39 1 12.0108 0.0211 2.8154 40 1 12.2015 0.5516 1.0592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355495552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:31 Heat of formation + Delta-G solvation = 87.993512 kcal Electronic energy + Delta-G solvation = -24450.259138 eV Core-core repulsion = 20973.223057 eV Total energy + Delta-G solvation = -3477.036081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.07643 -39.49739 -37.17459 -35.95585 -35.08919 -32.81009 -31.09453 -30.32680 -28.44721 -27.09523 -25.99237 -23.82926 -23.26337 -22.19246 -21.46402 -20.31928 -20.08025 -18.14042 -18.03287 -16.89007 -16.33004 -16.00195 -15.61519 -15.22371 -14.92445 -14.66982 -14.60250 -13.95248 -13.70281 -13.31397 -13.14105 -13.02696 -12.71187 -12.53240 -12.23747 -12.15057 -11.85428 -11.51072 -11.36780 -11.10705 -10.99662 -10.91453 -10.46956 -10.28265 -10.03356 -9.89483 -9.77888 -9.71744 -9.58709 -9.54424 -8.78206 -8.30811 -8.02819 -6.95272 -6.44626 -4.48407 1.05572 1.82865 2.39104 2.51103 2.91020 3.17015 3.22664 3.25472 3.28036 3.59572 3.63747 4.05152 4.17143 4.82225 4.90613 4.95371 4.98753 5.09451 5.17301 5.23426 5.33937 5.53804 5.63271 5.72397 5.75901 5.76874 5.92182 5.96853 6.03855 6.06373 6.08625 6.26574 6.29083 6.49933 6.52186 6.73545 6.97015 7.16056 7.29906 7.49494 7.62109 7.92700 8.25699 8.46610 8.64107 9.11937 10.59268 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.005744 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.911372 B = 4873.575281 C = 6990.208641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.043 3.957 3 C -0.094 4.094 4 N -0.398 5.398 5 C 0.088 3.912 6 C -0.256 4.256 7 C 0.601 3.399 8 O -0.556 6.556 9 N -0.586 5.586 10 C 0.226 3.774 11 C -0.544 4.544 12 H 0.072 0.928 13 C 0.079 3.921 14 N -0.871 5.871 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.151 3.849 20 C -0.165 4.165 21 C -0.176 4.176 22 C -0.177 4.177 23 S 0.378 5.622 24 C 0.079 3.921 25 N -0.481 5.481 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.274 0.726 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 7.852 2.801 8.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C -0.226 4.226 4 N -0.075 5.075 5 C -0.051 4.051 6 C -0.379 4.379 7 C 0.387 3.613 8 O -0.437 6.437 9 N -0.315 5.315 10 C 0.102 3.898 11 C -0.588 4.588 12 H 0.090 0.910 13 C -0.129 4.129 14 N -0.507 5.507 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.193 1.193 19 C 0.028 3.972 20 C -0.184 4.184 21 C -0.213 4.213 22 C -0.215 4.215 23 S 0.642 5.358 24 C -0.282 4.282 25 N -0.206 5.206 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.190 0.810 30 H 0.196 0.804 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.540 6.166 2.829 6.806 hybrid contribution -0.538 1.686 -0.837 1.957 sum -1.079 7.852 1.992 8.172 Atomic orbital electron populations 1.20036 0.87320 1.02633 1.02262 1.20752 0.96431 0.88420 1.03188 1.22292 0.79645 1.00351 1.20295 1.43661 1.05216 1.08511 1.50070 1.20134 0.80459 1.00612 1.03907 1.23668 0.98003 0.99976 1.16302 1.16571 0.83098 0.84866 0.76715 1.90727 1.80870 1.19732 1.52366 1.47944 1.05574 1.08836 1.69130 1.19733 0.95776 0.76032 0.98272 1.21476 1.47336 0.97552 0.92389 0.90999 1.24922 0.93941 0.96362 0.97642 1.69868 1.43038 1.09262 1.28484 0.86565 0.79324 0.78552 0.83574 1.19714 1.20603 1.19301 1.20937 0.80662 1.02058 0.93502 1.22774 0.97503 0.99234 0.98872 1.22995 1.03428 0.92732 1.02146 1.22908 0.91605 1.03881 1.03083 1.88476 0.79105 0.94840 1.73383 1.30141 1.05142 0.85145 1.07733 1.70503 0.97295 1.28916 1.23879 0.91246 0.90976 0.91307 0.81044 0.80408 0.92241 0.93987 0.91580 0.89583 0.90004 0.87619 0.88601 0.89400 0.89014 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.41 36.01 0.37 -0.42 16 2 C 0.04 0.75 7.05 -83.08 -0.59 0.17 16 3 C -0.09 -1.54 11.92 -15.66 -0.19 -1.72 16 4 N -0.40 -7.51 3.14 -63.51 -0.20 -7.71 16 5 C 0.09 1.59 10.94 -17.41 -0.19 1.40 16 6 C -0.26 -5.06 6.12 -37.90 -0.23 -5.29 16 7 C 0.60 12.13 7.57 -12.77 -0.10 12.04 16 8 O -0.56 -11.70 16.26 5.22 0.08 -11.62 16 9 N -0.59 -11.37 2.48 -176.54 -0.44 -11.81 16 10 C 0.23 4.81 4.76 -5.19 -0.02 4.79 16 11 C -0.54 -12.65 6.94 -34.44 -0.24 -12.89 16 12 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 13 C 0.08 1.89 5.01 -17.82 -0.09 1.80 16 14 N -0.87 -21.54 13.29 55.43 0.74 -20.80 16 15 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C 0.15 2.50 5.72 -4.04 -0.02 2.48 16 20 C -0.16 -2.39 6.01 -90.62 -0.54 -2.94 16 21 C -0.18 -2.30 10.18 -26.69 -0.27 -2.57 16 22 C -0.18 -2.10 10.25 -26.69 -0.27 -2.37 16 23 S 0.38 8.03 16.09 -107.50 -1.73 6.30 16 24 C 0.08 1.68 8.92 -88.51 -0.79 0.89 16 25 N -0.48 -10.19 11.32 -9.73 -0.11 -10.30 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.17 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.18 2.76 7.98 -52.48 -0.42 2.34 16 31 H 0.06 1.30 8.02 -51.93 -0.42 0.89 16 32 H 0.04 0.96 4.49 -22.23 -0.10 0.86 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 35 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 36 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.10 1.30 8.05 -51.93 -0.42 0.88 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -27.77 350.09 -9.64 -37.40 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.06 Total: 3.53 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.17 Total: -4.64 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.01 Total: -50.62 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -1.73 Total: 6.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.77 -9.64 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355495552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.398 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds