Wall clock time and date at job start Tue Mar 31 2020 12:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34223 * 125.76966 * 2 1 4 4 N 1.39118 * 107.11243 * 179.97438 * 3 2 1 5 5 C 1.36237 * 139.29464 * 179.69012 * 4 3 2 6 6 C 1.33010 * 116.11177 * 179.97438 * 5 4 3 7 7 C 1.46870 * 125.22748 * 180.13453 * 6 5 4 8 8 O 1.21666 * 119.99681 * 352.00733 * 7 6 5 9 9 N 1.34770 * 119.99820 * 172.00590 * 7 6 5 10 10 C 1.46500 * 120.00305 * 2.03800 * 9 7 6 11 11 C 1.50700 * 109.46986 * 82.37792 * 10 9 7 12 12 H 1.07999 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99990 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00403 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99783 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47442 * 60.00516 * 15 13 11 17 17 H 1.48502 * 109.46848 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47134 * 299.99981 * 15 13 11 19 19 C 1.46504 * 120.00026 * 182.03933 * 9 7 6 20 20 C 1.53001 * 109.47006 * 94.95355 * 19 9 7 21 21 C 1.53000 * 117.49841 * 247.77764 * 20 19 9 22 22 C 1.53001 * 117.49873 * 179.11860 * 20 19 9 23 23 S 1.75812 * 109.54414 * 0.35160 * 6 5 4 24 24 C 1.35445 * 106.45786 * 0.02562 * 4 3 2 25 25 N 1.32268 * 108.78106 * 359.97438 * 24 4 3 26 26 H 1.09001 * 109.47098 * 89.99425 * 1 2 3 27 27 H 1.08994 * 109.46899 * 209.99475 * 1 2 3 28 28 H 1.08997 * 109.47155 * 329.99770 * 1 2 3 29 29 H 1.08006 * 126.44234 * 359.97438 * 3 2 1 30 30 H 1.08003 * 121.94229 * 0.02562 * 5 4 3 31 31 H 1.09004 * 109.47612 * 202.37971 * 10 9 7 32 32 H 1.08999 * 109.47164 * 322.37978 * 10 9 7 33 33 H 0.96992 * 120.00589 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47467 * 214.95243 * 19 9 7 35 35 H 1.08994 * 109.46717 * 334.95579 * 19 9 7 36 36 H 1.09002 * 115.54743 * 33.44543 * 20 19 9 37 37 H 1.09002 * 117.50127 * 0.02562 * 21 20 19 38 38 H 1.09007 * 117.49949 * 145.02366 * 21 20 19 39 39 H 1.09004 * 117.49446 * 214.98063 * 22 20 19 40 40 H 1.08999 * 117.49634 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.0891 0.0000 4 7 3.6097 0.6440 0.0006 5 6 4.8724 1.1554 -0.0039 6 6 5.8634 0.2682 0.0001 7 6 7.2948 0.5969 -0.0007 8 8 7.6542 1.7494 -0.1518 9 7 8.2101 -0.3782 0.1659 10 6 7.7794 -1.7717 0.3031 11 6 7.5329 -2.3581 -1.0631 12 1 7.6826 -1.7534 -1.9453 13 6 7.1174 -3.6669 -1.1868 14 7 6.9355 -4.4035 -0.1126 15 14 6.8126 -4.3939 -2.8803 16 1 8.0655 -4.3388 -3.6756 17 1 6.3758 -5.8064 -2.7413 18 1 5.7535 -3.6145 -3.5704 19 6 9.6360 -0.0446 0.2098 20 6 10.0773 0.1170 1.6659 21 6 10.4741 1.5191 2.1324 22 6 11.5483 0.4483 1.9256 23 16 5.1964 -1.3585 0.0001 24 6 3.5577 -0.7094 0.0003 25 7 2.2900 -1.0869 0.0002 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8899 0.5138 29 1 1.9617 2.1175 -0.0004 30 1 5.0580 2.2194 -0.0095 31 1 8.5566 -2.3442 0.8094 32 1 6.8599 -1.8119 0.8870 33 1 6.6428 -5.3241 -0.1996 34 1 10.2109 -0.8441 -0.2574 35 1 9.8076 0.8881 -0.3274 36 1 9.5723 -0.5285 2.3845 37 1 10.4203 2.3265 1.4021 38 1 10.2305 1.7959 3.1582 39 1 12.0108 0.0211 2.8154 40 1 12.2015 0.5516 1.0592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355495552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:31 Heat of formation + Delta-G solvation = 74.948190 kcal Electronic energy + Delta-G solvation = -24450.824825 eV Core-core repulsion = 20973.223057 eV Total energy + Delta-G solvation = -3477.601768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.52300 -41.02543 -38.39371 -37.36576 -36.66598 -34.56076 -32.37050 -31.76844 -29.99695 -28.57225 -27.30349 -25.41154 -24.91851 -23.19082 -22.83242 -21.69523 -21.33449 -19.66679 -19.53567 -18.67389 -17.81941 -17.48896 -17.10052 -16.65094 -16.42373 -16.17764 -16.04575 -15.30060 -14.92103 -14.77184 -14.57849 -14.35497 -14.08469 -14.06239 -13.60118 -13.43749 -13.11408 -12.94992 -12.73192 -12.60569 -12.33521 -12.31108 -12.18112 -11.85568 -11.46383 -11.41870 -11.27358 -11.14272 -11.04134 -10.83025 -10.58636 -9.79335 -9.51786 -8.52068 -8.27305 -6.34200 -0.42467 0.27772 0.87032 1.05695 1.41368 1.45622 1.48045 1.50568 1.86395 2.05225 2.16659 2.39898 2.96476 3.06221 3.40578 3.67140 3.70563 3.84787 4.03498 4.11518 4.15291 4.32745 4.39337 4.43102 4.59397 4.74870 4.79435 4.84100 4.86026 4.90410 5.00432 5.03222 5.04969 5.15197 5.28244 5.30731 5.54488 5.63598 5.69021 5.83564 5.93233 6.31658 6.65885 6.83194 7.03956 7.28170 8.75609 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.005744 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.911372 B = 4873.575281 C = 6990.208641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.024 3.976 3 C -0.078 4.078 4 N -0.403 5.403 5 C 0.111 3.889 6 C -0.270 4.270 7 C 0.599 3.401 8 O -0.567 6.567 9 N -0.586 5.586 10 C 0.237 3.763 11 C -0.543 4.543 12 H 0.060 0.940 13 C 0.050 3.950 14 N -0.895 5.895 15 Si 0.932 3.068 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.277 1.277 19 C 0.150 3.850 20 C -0.186 4.186 21 C -0.175 4.175 22 C -0.153 4.153 23 S 0.325 5.675 24 C 0.054 3.946 25 N -0.513 5.513 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.220 0.780 30 H 0.210 0.790 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.273 0.727 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 9.963 2.867 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.208 4.208 4 N -0.081 5.081 5 C -0.027 4.027 6 C -0.393 4.393 7 C 0.387 3.613 8 O -0.450 6.450 9 N -0.314 5.314 10 C 0.113 3.887 11 C -0.586 4.586 12 H 0.078 0.922 13 C -0.155 4.155 14 N -0.531 5.531 15 Si 0.758 3.242 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.202 1.202 19 C 0.028 3.972 20 C -0.205 4.205 21 C -0.211 4.211 22 C -0.190 4.190 23 S 0.587 5.413 24 C -0.307 4.307 25 N -0.239 5.239 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.237 0.763 30 H 0.227 0.773 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.158 8.281 2.887 8.846 hybrid contribution -0.504 1.160 -0.836 1.516 sum -1.662 9.441 2.051 9.803 Atomic orbital electron populations 1.20202 0.83920 1.04154 1.03581 1.21642 0.98591 0.87588 1.02759 1.23168 0.78137 1.02314 1.17227 1.43923 1.06262 1.07826 1.50064 1.20535 0.79832 1.01540 1.00824 1.23625 0.98248 0.99127 1.18322 1.16637 0.83346 0.84802 0.76560 1.90707 1.81102 1.19877 1.53299 1.47970 1.06765 1.07967 1.68738 1.19456 0.95246 0.76862 0.97178 1.21489 1.46988 0.97423 0.92714 0.92164 1.25342 0.93991 0.96746 0.99425 1.69926 1.44354 1.09350 1.29513 0.85973 0.79059 0.77914 0.81301 1.18984 1.20387 1.20216 1.21071 0.79114 1.01878 0.95126 1.22621 1.00107 1.00617 0.97184 1.23030 1.03805 0.91888 1.02423 1.23024 0.90119 1.01755 1.04094 1.88470 0.80546 0.96933 1.75320 1.29810 1.04798 0.86328 1.09735 1.70467 0.97845 1.31277 1.24270 0.89914 0.91406 0.87873 0.76349 0.77346 0.93145 0.94510 0.91748 0.89502 0.90116 0.88809 0.89082 0.88485 0.87307 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.30 10.41 71.24 0.74 -0.56 16 2 C 0.02 0.78 7.05 41.32 0.29 1.07 16 3 C -0.08 -2.29 11.92 82.62 0.99 -1.30 16 4 N -0.40 -14.51 3.14 -354.86 -1.12 -15.62 16 5 C 0.11 3.84 10.94 82.84 0.91 4.74 16 6 C -0.27 -10.68 6.12 23.37 0.14 -10.53 16 7 C 0.60 24.25 7.57 86.50 0.65 24.91 16 8 O -0.57 -23.50 16.26 -4.24 -0.07 -23.57 16 9 N -0.59 -23.14 2.48 -830.67 -2.06 -25.20 16 10 C 0.24 10.44 4.76 85.63 0.41 10.85 16 11 C -0.54 -25.98 6.94 25.60 0.18 -25.80 16 12 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 13 C 0.05 2.45 5.01 84.66 0.42 2.88 16 14 N -0.89 -45.51 13.29 21.45 0.28 -45.22 16 15 Si 0.93 40.31 29.54 68.60 2.03 42.34 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 C 0.15 4.98 5.72 86.38 0.49 5.47 16 20 C -0.19 -5.32 6.01 -10.79 -0.06 -5.39 16 21 C -0.17 -4.32 10.18 30.62 0.31 -4.00 16 22 C -0.15 -3.30 10.25 30.62 0.31 -2.99 16 23 S 0.33 14.24 16.09 -56.49 -0.91 13.33 16 24 C 0.05 2.30 8.92 179.61 1.60 3.90 16 25 N -0.51 -21.52 11.32 -184.69 -2.09 -23.61 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.22 4.13 8.06 -2.91 -0.02 4.11 16 30 H 0.21 5.83 7.98 -2.91 -0.02 5.80 16 31 H 0.05 2.30 8.02 -2.38 -0.02 2.28 16 32 H 0.04 1.76 4.49 -21.27 -0.10 1.66 16 33 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 34 H 0.09 2.80 8.11 -2.39 -0.02 2.78 16 35 H 0.08 2.67 7.00 -2.39 -0.02 2.66 16 36 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.09 2.35 8.05 -2.39 -0.02 2.33 16 38 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -61.02 350.09 4.43 -56.58 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.97 Total: 17.73 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 7.39 Total: 3.25 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.98 Total: -109.66 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.07 Total: -23.57 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 14.24 SS G_CDS: -0.91 Total: 13.33 kcal Total: -61.02 4.43 -56.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355495552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.533 kcal (2) G-P(sol) polarization free energy of solvation -61.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds