Wall clock time and date at job start Tue Mar 31 2020 12:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38311 * 119.89442 * 2 1 4 4 C 1.38003 * 120.14950 * 179.74548 * 3 2 1 5 5 C 1.39350 * 119.92987 * 0.47949 * 4 3 2 6 6 C 1.48427 * 120.10660 * 179.76706 * 5 4 3 7 7 N 1.30761 * 126.41357 * 179.69939 * 6 5 4 8 8 O 1.21291 * 110.09491 * 179.75168 * 7 6 5 9 9 C 1.33668 * 110.02696 * 0.43446 * 8 7 6 10 10 C 1.50708 * 126.43513 * 179.83819 * 9 8 7 11 11 H 1.08997 * 109.46994 * 164.68803 * 10 9 8 12 12 C 1.53000 * 109.46658 * 284.68760 * 10 9 8 13 13 N 1.46497 * 109.47356 * 44.68356 * 10 9 8 14 14 C 1.34773 * 119.99769 * 154.99697 * 13 10 9 15 15 O 1.21687 * 120.00091 * 0.02562 * 14 13 10 16 16 C 1.46377 * 119.99984 * 180.02562 * 14 13 10 17 17 H 1.08004 * 119.99749 * 353.93730 * 16 14 13 18 18 C 1.40046 * 119.99938 * 173.94381 * 16 14 13 19 19 N 1.30672 * 120.00366 * 6.14810 * 18 16 14 20 20 Si 1.86807 * 119.99665 * 186.14758 * 18 16 14 21 21 H 1.48494 * 109.47087 * 94.98570 * 20 18 16 22 22 H 1.48503 * 109.46790 * 214.98089 * 20 18 16 23 23 H 1.48499 * 109.47214 * 334.98220 * 20 18 16 24 24 N 1.30965 * 107.12360 * 359.57211 * 9 8 7 25 25 C 1.39267 * 119.78665 * 359.49845 * 5 4 3 26 26 C 1.38276 * 119.85386 * 0.27173 * 25 5 4 27 27 F 1.35103 * 119.96701 * 180.02562 * 26 25 5 28 28 H 1.08996 * 109.47450 * 270.02522 * 1 2 3 29 29 H 1.08996 * 109.47054 * 30.02647 * 1 2 3 30 30 H 1.09003 * 109.47084 * 150.02611 * 1 2 3 31 31 H 1.08004 * 119.91960 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.03161 * 180.27497 * 4 3 2 33 33 H 1.09003 * 109.47089 * 299.99647 * 12 10 9 34 34 H 1.08997 * 109.47383 * 60.00281 * 12 10 9 35 35 H 1.09007 * 109.46595 * 180.02562 * 12 10 9 36 36 H 0.96997 * 120.00240 * 335.00759 * 13 10 9 37 37 H 0.96996 * 119.99932 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.07382 * 180.29847 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1991 0.0000 4 6 3.5763 1.2052 0.0053 5 6 4.2770 0.0007 0.0006 6 6 5.7612 0.0028 0.0010 7 7 6.5389 -1.0485 0.0024 8 8 7.7025 -0.7060 -0.0025 9 6 7.7871 0.6279 0.0018 10 6 9.0538 1.4445 0.0014 11 1 8.8215 2.4753 -0.2659 12 6 9.6841 1.4086 1.3951 13 7 9.9939 0.8869 -0.9741 14 6 10.9406 1.6735 -1.5233 15 8 11.0146 2.8466 -1.2086 16 6 11.8795 1.1166 -2.4984 17 1 11.8781 0.0565 -2.7050 18 6 12.7799 1.9584 -3.1633 19 7 12.8654 3.2186 -2.8283 20 14 13.8585 1.2797 -4.5292 21 1 13.2085 1.5254 -5.8415 22 1 15.1806 1.9552 -4.4976 23 1 14.0438 -0.1807 -4.3341 24 7 6.5625 1.0920 0.0006 25 6 3.5801 -1.2051 0.0011 26 6 2.1973 -1.2009 0.0006 27 9 1.5190 -2.3693 0.0016 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6532 2.1327 -0.0004 32 1 4.1126 2.1426 0.0098 33 1 8.9846 1.8234 2.1209 34 1 9.9164 0.3777 1.6624 35 1 10.6000 1.9995 1.3949 36 1 9.9350 -0.0482 -1.2248 37 1 13.4887 3.8017 -3.2891 38 1 4.1184 -2.1413 0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357351288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:57 Heat of formation + Delta-G solvation = 2.959922 kcal Electronic energy + Delta-G solvation = -25110.685054 eV Core-core repulsion = 21063.748464 eV Total energy + Delta-G solvation = -4046.936590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.22085 -45.52800 -39.53256 -37.87938 -35.98147 -34.90156 -33.32972 -32.52079 -31.54089 -30.94820 -29.66565 -27.80212 -26.27529 -24.69034 -24.09803 -23.14165 -22.04890 -21.08116 -19.67614 -18.28521 -18.04296 -17.58342 -16.94780 -16.52574 -16.02754 -16.00580 -15.55981 -15.19267 -14.65668 -14.51790 -13.97150 -13.81428 -13.70032 -13.54081 -13.49726 -12.89138 -12.85318 -12.57754 -12.48196 -12.09655 -11.94075 -11.82787 -11.59085 -11.54966 -11.26977 -11.15600 -11.05396 -10.89011 -10.57194 -10.31851 -10.19775 -9.26067 -8.94720 -8.79897 -7.88971 -7.79762 -6.31046 -4.75591 0.32090 0.81955 1.27667 2.26902 2.82620 3.09753 3.17024 3.19979 3.23519 3.31168 3.79438 3.91584 4.06378 4.31699 4.37666 4.44685 4.63741 4.72190 4.85262 4.98247 5.16528 5.17701 5.22844 5.36567 5.41340 5.57730 5.63235 5.69225 5.74013 5.78951 5.85123 5.96829 5.98484 6.07949 6.23537 6.45393 6.54296 7.34736 7.63601 7.82058 8.11885 8.18889 8.91988 9.28543 10.43593 10.62271 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.002364 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.627810 B =11843.533818 C =12013.405782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.104 4.104 3 C -0.095 4.095 4 C -0.080 4.080 5 C 0.009 3.991 6 C 0.203 3.797 7 N -0.377 5.377 8 O 0.087 5.913 9 C 0.206 3.794 10 C 0.244 3.756 11 H 0.124 0.876 12 C -0.158 4.158 13 N -0.761 5.761 14 C 0.558 3.442 15 O -0.574 6.574 16 C -0.541 4.541 17 H 0.071 0.929 18 C 0.088 3.912 19 N -0.764 5.764 20 Si 0.910 3.090 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.264 1.264 24 N -0.473 5.473 25 C -0.116 4.116 26 C 0.094 3.906 27 F -0.135 7.135 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.387 0.613 37 H 0.270 0.730 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.850 -6.003 6.397 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.106 4.106 3 C -0.113 4.113 4 C -0.100 4.100 5 C 0.007 3.993 6 C -0.067 4.067 7 N -0.083 5.083 8 O 0.026 5.974 9 C -0.016 4.016 10 C 0.136 3.864 11 H 0.141 0.859 12 C -0.218 4.218 13 N -0.419 5.419 14 C 0.363 3.637 15 O -0.457 6.457 16 C -0.578 4.578 17 H 0.089 0.911 18 C -0.133 4.133 19 N -0.392 5.392 20 Si 0.734 3.266 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.188 1.188 24 N -0.206 5.206 25 C -0.137 4.137 26 C 0.075 3.925 27 F -0.113 7.113 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.219 0.781 37 H 0.081 0.919 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.313 -5.492 6.595 22.052 hybrid contribution 0.570 -1.064 -0.821 1.460 sum -19.743 -6.556 5.774 21.590 Atomic orbital electron populations 1.20777 0.89767 1.03654 1.03080 1.20129 0.97366 0.91872 1.01242 1.20901 0.93466 0.97369 0.99558 1.21331 0.93956 0.97891 0.96821 1.17028 0.85501 0.93618 1.03104 1.23735 0.96285 0.84318 1.02381 1.74861 0.89532 1.23115 1.20774 1.85275 1.21867 1.25115 1.65150 1.29484 0.97222 0.81595 0.93254 1.19185 0.79520 0.95436 0.92309 0.85877 1.22244 1.02362 1.02946 0.94200 1.46395 1.34971 1.13853 1.46656 1.18266 0.79477 0.85193 0.80749 1.90621 1.73701 1.16893 1.64438 1.20841 1.18143 0.95264 1.23533 0.91081 1.25704 0.96252 0.94432 0.96868 1.70006 1.29581 1.04785 1.34860 0.86321 0.79252 0.79879 0.81142 1.19757 1.20369 1.18781 1.71984 0.99507 1.28291 1.20794 1.21088 0.92379 0.99067 1.01184 1.17229 0.89293 0.81254 1.04747 1.91499 1.79867 1.45946 1.93996 0.90454 0.90582 0.90981 0.84062 0.83651 0.92228 0.92164 0.89403 0.78067 0.91907 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.83 36.00 0.35 -0.37 16 2 C -0.10 -0.93 5.89 -104.49 -0.62 -1.54 16 3 C -0.09 -0.80 9.68 -39.64 -0.38 -1.19 16 4 C -0.08 -0.86 9.70 -39.25 -0.38 -1.24 16 5 C 0.01 0.12 5.87 -104.90 -0.62 -0.50 16 6 C 0.20 3.13 7.80 -156.11 -1.22 1.91 16 7 N -0.38 -6.03 11.86 30.97 0.37 -5.66 16 8 O 0.09 1.39 11.10 18.04 0.20 1.59 16 9 C 0.21 3.39 7.25 -12.99 -0.09 3.30 16 10 C 0.24 4.37 3.12 -69.08 -0.22 4.15 16 11 H 0.12 2.43 7.58 -51.93 -0.39 2.04 16 12 C -0.16 -2.47 9.47 37.16 0.35 -2.12 16 13 N -0.76 -15.78 5.06 -56.34 -0.29 -16.06 16 14 C 0.56 14.75 7.71 -12.99 -0.10 14.65 16 15 O -0.57 -17.20 14.71 5.20 0.08 -17.12 16 16 C -0.54 -14.49 9.53 -35.63 -0.34 -14.83 16 17 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 18 C 0.09 2.35 5.49 -17.37 -0.10 2.25 16 19 N -0.76 -21.89 11.85 55.55 0.66 -21.23 16 20 Si 0.91 19.43 29.56 -169.99 -5.03 14.41 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 N -0.47 -7.76 11.26 -9.88 -0.11 -7.87 16 25 C -0.12 -1.38 9.67 -39.19 -0.38 -1.76 16 26 C 0.09 1.00 7.23 -39.46 -0.29 0.72 16 27 F -0.13 -1.47 16.46 2.25 0.04 -1.43 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.07 0.46 7.63 -51.93 -0.40 0.06 16 31 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.15 1.52 7.88 -52.49 -0.41 1.11 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 36 H 0.39 7.22 8.42 -40.82 -0.34 6.88 16 37 H 0.27 7.02 8.29 -40.82 -0.34 6.69 16 38 H 0.14 1.68 7.87 -52.49 -0.41 1.27 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -32.02 345.65 -6.93 -38.95 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.04 Total: 5.78 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -4.02 Total: 3.44 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.63 Total: -50.83 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.28 Total: -15.53 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.02 -6.93 -38.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357351288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.912 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds