Wall clock time and date at job start Tue Mar 31 2020 12:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38309 * 119.89416 * 2 1 4 4 C 1.38002 * 120.14768 * 179.74235 * 3 2 1 5 5 C 1.39356 * 119.93001 * 0.51398 * 4 3 2 6 6 C 1.48429 * 120.10775 * 179.73978 * 5 4 3 7 7 N 1.30759 * 126.41399 * 179.74552 * 6 5 4 8 8 O 1.21288 * 110.09690 * 179.97438 * 7 6 5 9 9 C 1.33670 * 110.02770 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.43695 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47060 * 195.02372 * 10 9 8 12 12 C 1.52997 * 109.47212 * 75.02317 * 10 9 8 13 13 N 1.46500 * 109.47209 * 315.02350 * 10 9 8 14 14 C 1.34777 * 120.00075 * 204.99847 * 13 10 9 15 15 O 1.21692 * 119.99797 * 0.02562 * 14 13 10 16 16 C 1.46370 * 120.00227 * 179.97438 * 14 13 10 17 17 H 1.08002 * 119.99675 * 0.02562 * 16 14 13 18 18 C 1.40047 * 120.00156 * 179.97438 * 16 14 13 19 19 N 1.30675 * 120.00119 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00182 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46951 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47106 * 120.00073 * 20 18 16 23 23 H 1.48501 * 109.47520 * 240.00564 * 20 18 16 24 24 N 1.30971 * 107.12147 * 0.25824 * 9 8 7 25 25 C 1.39274 * 119.78360 * 359.46768 * 5 4 3 26 26 C 1.38264 * 119.85205 * 0.27551 * 25 5 4 27 27 F 1.35102 * 119.96537 * 180.02562 * 26 25 5 28 28 H 1.09001 * 109.47518 * 270.02203 * 1 2 3 29 29 H 1.09000 * 109.46901 * 30.02258 * 1 2 3 30 30 H 1.08999 * 109.47238 * 150.02067 * 1 2 3 31 31 H 1.07998 * 119.92073 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.03705 * 180.27812 * 4 3 2 33 33 H 1.08998 * 109.47533 * 59.99628 * 12 10 9 34 34 H 1.08996 * 109.47853 * 179.97438 * 12 10 9 35 35 H 1.09002 * 109.47153 * 299.99998 * 12 10 9 36 36 H 0.96997 * 120.00274 * 24.99818 * 13 10 9 37 37 H 0.96991 * 119.99969 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.06827 * 180.30193 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1991 0.0000 4 6 3.5763 1.2052 0.0054 5 6 4.2770 0.0006 0.0000 6 6 5.7612 0.0026 -0.0001 7 7 6.5389 -1.0486 -0.0002 8 8 7.7024 -0.7063 -0.0008 9 6 7.7871 0.6277 -0.0006 10 6 9.0538 1.4441 -0.0006 11 1 8.8215 2.4752 0.2660 12 6 9.6843 1.4073 -1.3941 13 7 9.9937 0.8873 0.9755 14 6 10.9404 1.6742 1.5243 15 8 11.0141 2.8473 1.2093 16 6 11.8791 1.1181 2.4999 17 1 11.8134 0.0770 2.7797 18 6 12.8631 1.9356 3.0697 19 7 12.9429 3.1951 2.7308 20 14 14.0607 1.2260 4.3154 21 1 13.7608 -0.2130 4.5263 22 1 15.4484 1.3726 3.8072 23 1 13.9254 1.9540 5.6026 24 7 6.5624 1.0918 0.0058 25 6 3.5799 -1.2052 0.0004 26 6 2.1973 -1.2009 0.0004 27 9 1.5189 -2.3692 0.0013 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6533 2.1326 0.0004 32 1 4.1127 2.1425 0.0099 33 1 8.9851 1.8215 -2.1204 34 1 10.6003 1.9982 -1.3944 35 1 9.9166 0.3762 -1.6607 36 1 9.9348 -0.0477 1.2269 37 1 13.6246 3.7612 3.1252 38 1 4.1183 -2.1414 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357351290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:58 Heat of formation + Delta-G solvation = -18.669804 kcal Electronic energy + Delta-G solvation = -25106.837269 eV Core-core repulsion = 21058.962744 eV Total energy + Delta-G solvation = -4047.874525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.05034 -46.79688 -40.35319 -39.74213 -37.24114 -36.51293 -34.64661 -34.24210 -32.83026 -31.81677 -31.19690 -28.57872 -28.23424 -26.02524 -25.18296 -24.12836 -23.08879 -22.38940 -21.31425 -19.79213 -19.33745 -19.00615 -17.98214 -17.65803 -17.43430 -16.85068 -16.83240 -16.58848 -16.21729 -15.68406 -15.27730 -15.17746 -14.73370 -14.45942 -14.43777 -14.35710 -13.81663 -13.81049 -13.74713 -13.39926 -13.36574 -12.94001 -12.78472 -12.68593 -12.63678 -12.61625 -12.49899 -12.40097 -12.18190 -11.97345 -11.43802 -10.93842 -10.08029 -9.91651 -9.73036 -9.65816 -8.30404 -6.86197 -0.63622 0.00873 0.04147 1.14618 1.41592 1.43615 1.47998 1.60308 2.04632 2.26938 2.44815 2.46059 2.59548 2.98411 3.16224 3.51450 3.58147 3.64320 3.79458 3.92308 4.08832 4.12180 4.14643 4.26706 4.52835 4.55858 4.61609 4.70594 4.75683 4.83062 4.91325 4.93221 5.14768 5.19588 5.22046 5.23189 5.34113 5.69269 5.83058 5.96632 6.21137 6.84497 6.87338 7.39888 8.42923 8.64537 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.002344 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.043528 B =11941.033144 C =12105.366350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.084 4.084 4 C -0.081 4.081 5 C -0.020 4.020 6 C 0.207 3.793 7 N -0.388 5.388 8 O 0.085 5.915 9 C 0.205 3.795 10 C 0.249 3.751 11 H 0.103 0.897 12 C -0.149 4.149 13 N -0.751 5.751 14 C 0.548 3.452 15 O -0.618 6.618 16 C -0.568 4.568 17 H 0.088 0.912 18 C 0.032 3.968 19 N -0.815 5.815 20 Si 0.994 3.006 21 H -0.249 1.249 22 H -0.268 1.268 23 H -0.270 1.270 24 N -0.479 5.479 25 C -0.123 4.123 26 C 0.082 3.918 27 F -0.138 7.138 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.178 0.822 32 H 0.146 0.854 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.398 0.602 37 H 0.276 0.724 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.548 -6.716 -6.039 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.101 4.101 4 C -0.101 4.101 5 C -0.022 4.022 6 C -0.063 4.063 7 N -0.095 5.095 8 O 0.026 5.974 9 C -0.016 4.016 10 C 0.141 3.859 11 H 0.120 0.880 12 C -0.208 4.208 13 N -0.407 5.407 14 C 0.353 3.647 15 O -0.504 6.504 16 C -0.604 4.604 17 H 0.106 0.894 18 C -0.184 4.184 19 N -0.445 5.445 20 Si 0.814 3.186 21 H -0.172 1.172 22 H -0.193 1.193 23 H -0.195 1.195 24 N -0.212 5.212 25 C -0.143 4.143 26 C 0.063 3.937 27 F -0.117 7.117 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.196 0.804 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.038 -6.261 -6.254 23.748 hybrid contribution 0.966 -0.866 0.610 1.434 sum -21.071 -7.127 -5.644 22.949 Atomic orbital electron populations 1.20900 0.87465 1.04791 1.04193 1.20522 0.98988 0.91104 0.98805 1.21271 0.92455 0.98705 0.97716 1.21480 0.95099 0.97060 0.96435 1.17153 0.84213 0.94889 1.05973 1.24206 0.97443 0.83613 1.01011 1.74848 0.89493 1.23361 1.21815 1.85264 1.22132 1.24616 1.65339 1.29030 0.96735 0.81848 0.93987 1.19086 0.79675 0.94414 0.92718 0.87964 1.22142 1.01657 1.03768 0.93252 1.45978 1.34351 1.13876 1.46537 1.18478 0.80165 0.84926 0.81093 1.90585 1.74760 1.18656 1.66394 1.21400 1.15436 0.98464 1.25099 0.89429 1.26882 0.98971 0.94460 0.98063 1.70154 1.30007 1.07093 1.37210 0.85009 0.77053 0.79602 0.76913 1.17244 1.19268 1.19546 1.71981 0.99538 1.28812 1.20902 1.21045 0.93093 0.98535 1.01668 1.17369 0.88956 0.81934 1.05483 1.91489 1.79754 1.46304 1.94103 0.89233 0.88213 0.91096 0.80419 0.83587 0.89659 0.91797 0.90511 0.76768 0.91416 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.83 71.23 0.70 -0.34 16 2 C -0.09 -1.39 5.89 -19.78 -0.12 -1.51 16 3 C -0.08 -1.16 9.68 22.23 0.22 -0.94 16 4 C -0.08 -1.61 9.70 22.48 0.22 -1.39 16 5 C -0.02 -0.51 5.88 -20.04 -0.12 -0.63 16 6 C 0.21 6.38 7.80 137.30 1.07 7.45 16 7 N -0.39 -12.44 11.86 -59.15 -0.70 -13.14 16 8 O 0.09 2.73 11.11 74.61 0.83 3.56 16 9 C 0.21 6.80 7.24 88.36 0.64 7.44 16 10 C 0.25 9.08 3.12 44.24 0.14 9.22 16 11 H 0.10 4.21 7.58 -2.39 -0.02 4.19 16 12 C -0.15 -4.66 9.47 71.98 0.68 -3.98 16 13 N -0.75 -31.71 5.06 -450.40 -2.28 -33.99 16 14 C 0.55 29.79 7.71 86.36 0.67 30.46 16 15 O -0.62 -38.53 14.68 -4.32 -0.06 -38.59 16 16 C -0.57 -30.71 9.54 24.83 0.24 -30.47 16 17 H 0.09 4.28 7.85 -2.91 -0.02 4.26 16 18 C 0.03 1.72 5.50 85.30 0.47 2.19 16 19 N -0.82 -47.84 11.83 21.84 0.26 -47.59 16 20 Si 0.99 39.66 29.56 68.60 2.03 41.68 16 21 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 24 N -0.48 -15.71 11.26 -302.52 -3.41 -19.11 16 25 C -0.12 -2.87 9.67 22.53 0.22 -2.65 16 26 C 0.08 1.64 7.23 22.34 0.16 1.80 16 27 F -0.14 -2.86 16.46 44.97 0.74 -2.12 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.45 8.08 -2.39 -0.02 0.43 16 30 H 0.07 0.68 7.63 -2.39 -0.02 0.67 16 31 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 32 H 0.15 2.87 7.88 -2.91 -0.02 2.84 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.40 14.94 8.42 -92.71 -0.78 14.16 16 37 H 0.28 14.64 8.29 -92.71 -0.77 13.87 16 38 H 0.14 3.27 7.87 -2.91 -0.02 3.25 16 Total: -1.00 -71.43 345.62 2.93 -68.50 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.35 Total: 24.15 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 5.18 Total: 16.65 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -6.13 Total: -113.83 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: 0.77 Total: -35.03 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.74 Total: -2.12 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.68 kcal Total: -71.43 2.93 -68.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357351290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.833 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds