Wall clock time and date at job start Tue Mar 31 2020 12:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46914 * 2 1 4 4 C 1.52999 * 109.46966 * 240.00098 * 2 1 3 5 5 C 1.50704 * 109.47353 * 59.99938 * 4 2 1 6 6 H 1.08002 * 119.99545 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00286 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99879 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46887 * 120.00610 * 9 7 5 12 12 H 1.48504 * 109.47156 * 240.00397 * 9 7 5 13 13 C 1.52997 * 109.47238 * 120.00238 * 2 1 3 14 14 N 1.46504 * 109.46759 * 299.99914 * 13 2 1 15 15 C 1.34777 * 119.99647 * 180.02562 * 14 13 2 16 16 O 1.21582 * 120.00440 * 359.97438 * 15 14 13 17 17 C 1.47673 * 120.00138 * 180.02562 * 15 14 13 18 18 C 1.40790 * 119.45795 * 359.97438 * 17 15 14 19 19 C 1.35099 * 121.44282 * 179.97438 * 18 17 15 20 20 C 1.41944 * 120.25413 * 0.02562 * 19 18 17 21 21 N 1.32262 * 130.72089 * 180.02562 * 20 19 18 22 22 S 1.55512 * 109.49148 * 179.97438 * 21 20 19 23 23 N 1.55537 * 100.21870 * 359.97438 * 22 21 20 24 24 C 1.32473 * 109.37442 * 0.02562 * 23 22 21 25 25 C 1.37974 * 119.46305 * 179.97438 * 17 15 14 26 26 H 1.08995 * 109.46749 * 299.99627 * 1 2 3 27 27 H 1.09002 * 109.47144 * 59.99913 * 1 2 3 28 28 H 1.08996 * 109.46909 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47332 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47286 * 300.00000 * 3 2 1 31 31 H 1.09001 * 109.47452 * 59.99965 * 3 2 1 32 32 H 1.09009 * 109.47045 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47251 * 299.99722 * 4 2 1 34 34 H 0.97003 * 120.00139 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47010 * 180.02562 * 13 2 1 36 36 H 1.08996 * 109.47341 * 60.00056 * 13 2 1 37 37 H 0.96997 * 120.00262 * 0.02562 * 14 13 2 38 38 H 1.08002 * 119.27813 * 0.02562 * 18 17 15 39 39 H 1.07994 * 119.87131 * 180.02562 * 19 18 17 40 40 H 1.07995 * 120.15640 * 0.02738 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2478 0.3987 -5.2572 10 1 0.4225 1.5650 -4.8530 11 1 2.4026 0.8661 -6.0655 12 1 0.4235 -0.5353 -6.0656 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6694 16 8 2.5767 -1.4794 3.7810 17 6 1.3851 0.2049 4.8752 18 6 0.5760 1.3482 4.7329 19 6 0.1030 2.0153 5.8084 20 6 0.4166 1.5717 7.1197 21 7 0.0715 2.0575 8.3005 22 16 0.6922 1.1798 9.4243 23 7 1.4417 0.1215 8.5655 24 6 1.2557 0.3862 7.2809 25 6 1.7252 -0.2761 6.1229 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8615 -1.8822 -4.7337 35 1 3.1300 -0.7209 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9937 0.7578 2.3564 38 1 0.3272 1.6993 3.7423 39 1 -0.5160 2.8893 5.6697 40 1 2.3472 -1.1542 6.2148 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360404585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:38 Heat of formation + Delta-G solvation = 27.062914 kcal Electronic energy + Delta-G solvation = -23442.683588 eV Core-core repulsion = 19963.005358 eV Total energy + Delta-G solvation = -3479.678230 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34147 -39.74966 -37.28837 -36.28361 -34.27210 -33.70363 -32.12851 -30.64716 -28.57800 -27.09543 -26.55037 -26.01646 -23.75985 -22.82527 -22.16627 -20.73483 -19.87834 -18.70272 -17.75504 -17.20993 -16.45525 -16.21791 -15.99096 -15.47301 -15.14357 -14.53673 -14.39231 -14.20758 -13.69365 -13.42759 -13.19355 -12.89413 -12.70794 -12.36821 -12.09054 -12.08249 -12.06379 -11.91501 -11.29308 -11.19070 -11.05123 -11.04906 -10.85758 -10.67562 -10.44419 -10.27219 -10.02618 -9.91652 -9.22216 -9.18033 -8.94302 -8.90723 -8.71981 -8.38026 -6.01835 -4.03175 -0.62362 0.70960 0.99079 1.33663 1.33891 2.60832 3.23100 3.28958 3.37399 3.39422 3.49071 3.67608 4.38925 4.43488 4.53149 4.56479 4.66432 4.89504 5.33836 5.34192 5.46638 5.58100 5.58332 5.66231 5.72224 5.83136 5.90387 6.12083 6.17560 6.24772 6.34833 6.39716 6.48300 6.59564 6.69808 7.02173 7.04487 7.08769 7.59880 7.62888 7.73726 7.96762 8.25706 8.38577 9.01838 9.60203 11.09597 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.039200 B = 0.002256 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.122053 B =12410.779455 C =12928.539787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.712 5.712 15 C 0.552 3.448 16 O -0.536 6.536 17 C -0.106 4.106 18 C -0.071 4.071 19 C -0.069 4.069 20 C 0.091 3.909 21 N -0.598 5.598 22 S 0.806 5.194 23 N -0.584 5.584 24 C 0.069 3.931 25 C 0.005 3.995 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 8.055 24.425 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.414 6.414 17 C -0.116 4.116 18 C -0.095 4.095 19 C -0.093 4.093 20 C -0.068 4.068 21 N -0.449 5.449 22 S 0.852 5.148 23 N -0.437 5.437 24 C -0.089 4.089 25 C -0.021 4.021 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.272 7.443 26.644 28.162 hybrid contribution -0.439 0.625 -2.765 2.869 sum -5.711 8.068 23.879 25.844 Atomic orbital electron populations 1.21777 0.95218 1.01286 1.00265 1.20918 0.95516 0.95889 0.95010 1.21776 1.00666 0.95838 1.00267 1.19102 0.96420 0.95266 0.89437 1.21209 1.31135 1.12054 0.90476 0.92184 1.25017 0.95323 0.95092 0.99119 1.69973 1.36968 1.23037 1.23354 0.86595 0.78604 0.79667 0.83461 1.19802 1.21152 1.21147 1.21713 0.99165 0.96145 0.82530 1.46134 1.52709 1.31854 1.05674 1.18018 0.80829 0.84208 0.83187 1.90807 1.37933 1.25936 1.86722 1.19837 1.00802 0.97264 0.93653 1.20826 0.95486 0.93711 0.99508 1.20114 1.01351 1.01062 0.86791 1.21421 0.98250 0.94210 0.92893 1.72177 1.31135 1.35055 1.06551 1.78571 1.19784 0.99202 1.17216 1.72261 1.29257 1.32681 1.09460 1.21166 1.00797 0.96817 0.90098 1.20667 0.96170 0.98268 0.86997 0.95275 0.91333 0.93250 0.93251 0.91335 0.95274 0.96272 0.96267 0.93082 0.91433 0.91429 0.76467 0.83992 0.83619 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.17 7.65 -34.44 -0.26 -13.43 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.13 2.10 4.56 -4.04 -0.02 2.08 16 14 N -0.71 -9.49 4.90 -61.31 -0.30 -9.79 16 15 C 0.55 7.79 7.76 -12.41 -0.10 7.70 16 16 O -0.54 -9.58 16.26 5.29 0.09 -9.49 16 17 C -0.11 -1.19 5.85 -105.18 -0.62 -1.80 16 18 C -0.07 -0.61 9.39 -39.73 -0.37 -0.98 16 19 C -0.07 -0.59 10.06 -39.28 -0.39 -0.98 16 20 C 0.09 0.95 7.16 -83.10 -0.59 0.35 16 21 N -0.60 -5.90 11.43 25.70 0.29 -5.60 16 22 S 0.81 5.91 23.60 -107.50 -2.54 3.37 16 23 N -0.58 -6.21 11.45 25.64 0.29 -5.91 16 24 C 0.07 0.78 7.15 -83.21 -0.59 0.19 16 25 C 0.00 0.06 9.65 -38.46 -0.37 -0.31 16 26 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 27 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 31 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 32 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.40 4.27 4.10 -40.82 -0.17 4.11 16 38 H 0.14 0.88 6.29 -52.49 -0.33 0.55 16 39 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.16 1.86 7.57 -52.49 -0.40 1.46 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -32.23 342.95 -8.98 -41.21 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.69 Total: 0.52 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -3.02 Total: -10.04 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 1.02 Total: -46.56 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -2.54 Total: 3.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.23 -8.98 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360404585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.274 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds