Wall clock time and date at job start Tue Mar 31 2020 12:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46914 * 2 1 4 4 C 1.52999 * 109.46966 * 240.00098 * 2 1 3 5 5 C 1.50704 * 109.47353 * 59.99938 * 4 2 1 6 6 H 1.08002 * 119.99545 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00286 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99879 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46887 * 120.00610 * 9 7 5 12 12 H 1.48504 * 109.47156 * 240.00397 * 9 7 5 13 13 C 1.52997 * 109.47238 * 120.00238 * 2 1 3 14 14 N 1.46504 * 109.46759 * 299.99914 * 13 2 1 15 15 C 1.34777 * 119.99647 * 180.02562 * 14 13 2 16 16 O 1.21582 * 120.00440 * 359.97438 * 15 14 13 17 17 C 1.47673 * 120.00138 * 180.02562 * 15 14 13 18 18 C 1.40790 * 119.45795 * 359.97438 * 17 15 14 19 19 C 1.35099 * 121.44282 * 179.97438 * 18 17 15 20 20 C 1.41944 * 120.25413 * 0.02562 * 19 18 17 21 21 N 1.32262 * 130.72089 * 180.02562 * 20 19 18 22 22 S 1.55512 * 109.49148 * 179.97438 * 21 20 19 23 23 N 1.55537 * 100.21870 * 359.97438 * 22 21 20 24 24 C 1.32473 * 109.37442 * 0.02562 * 23 22 21 25 25 C 1.37974 * 119.46305 * 179.97438 * 17 15 14 26 26 H 1.08995 * 109.46749 * 299.99627 * 1 2 3 27 27 H 1.09002 * 109.47144 * 59.99913 * 1 2 3 28 28 H 1.08996 * 109.46909 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47332 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47286 * 300.00000 * 3 2 1 31 31 H 1.09001 * 109.47452 * 59.99965 * 3 2 1 32 32 H 1.09009 * 109.47045 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47251 * 299.99722 * 4 2 1 34 34 H 0.97003 * 120.00139 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47010 * 180.02562 * 13 2 1 36 36 H 1.08996 * 109.47341 * 60.00056 * 13 2 1 37 37 H 0.96997 * 120.00262 * 0.02562 * 14 13 2 38 38 H 1.08002 * 119.27813 * 0.02562 * 18 17 15 39 39 H 1.07994 * 119.87131 * 180.02562 * 19 18 17 40 40 H 1.07995 * 120.15640 * 0.02738 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2478 0.3987 -5.2572 10 1 0.4225 1.5650 -4.8530 11 1 2.4026 0.8661 -6.0655 12 1 0.4235 -0.5353 -6.0656 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6694 16 8 2.5767 -1.4794 3.7810 17 6 1.3851 0.2049 4.8752 18 6 0.5760 1.3482 4.7329 19 6 0.1030 2.0153 5.8084 20 6 0.4166 1.5717 7.1197 21 7 0.0715 2.0575 8.3005 22 16 0.6922 1.1798 9.4243 23 7 1.4417 0.1215 8.5655 24 6 1.2557 0.3862 7.2809 25 6 1.7252 -0.2761 6.1229 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8615 -1.8822 -4.7337 35 1 3.1300 -0.7209 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9937 0.7578 2.3564 38 1 0.3272 1.6993 3.7423 39 1 -0.5160 2.8893 5.6697 40 1 2.3472 -1.1542 6.2148 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360404585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:38 Heat of formation + Delta-G solvation = 5.807527 kcal Electronic energy + Delta-G solvation = -23443.605290 eV Core-core repulsion = 19963.005358 eV Total energy + Delta-G solvation = -3480.599932 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10711 -40.88820 -38.70295 -37.14294 -35.29140 -34.97028 -33.91816 -31.41253 -29.64564 -28.85002 -27.89107 -27.26483 -25.11004 -24.12196 -23.00830 -21.79738 -20.68247 -19.89974 -18.90269 -18.33385 -18.01388 -17.14693 -16.96339 -16.61058 -16.37941 -16.31095 -15.34613 -15.12013 -15.09963 -14.76107 -14.38546 -14.24720 -13.89203 -13.79303 -13.52737 -12.92771 -12.82537 -12.74484 -12.73755 -12.66144 -12.52400 -12.28441 -12.19135 -12.02987 -11.91018 -11.76445 -11.48511 -11.28041 -10.89237 -10.78706 -10.48969 -10.16099 -9.80038 -9.54476 -8.10983 -6.18175 -1.35698 -0.07916 0.32049 0.58120 0.70231 1.43997 1.45471 1.56715 1.67944 2.09900 2.47370 2.59448 2.94709 3.24017 3.58851 3.71679 3.83735 3.94405 4.03143 4.12778 4.14107 4.28369 4.65689 4.74598 4.77960 4.79301 4.85861 5.02602 5.03221 5.10495 5.14523 5.19502 5.19681 5.40286 5.50102 5.57243 5.59585 5.62198 5.69778 5.86335 5.94428 6.33926 6.53057 6.97845 7.16589 7.49597 9.01694 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.039200 B = 0.002256 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.122053 B =12410.779455 C =12928.539787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.124 4.124 4 C 0.037 3.963 5 C -0.509 4.509 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.255 1.255 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.140 3.860 14 N -0.696 5.696 15 C 0.554 3.446 16 O -0.581 6.581 17 C -0.105 4.105 18 C -0.069 4.069 19 C -0.058 4.058 20 C 0.076 3.924 21 N -0.619 5.619 22 S 0.899 5.101 23 N -0.620 5.620 24 C 0.048 3.952 25 C -0.008 4.008 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.074 0.926 32 H -0.014 1.014 33 H -0.014 1.014 34 H 0.258 0.742 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.415 0.585 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 11.233 25.970 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.182 4.182 4 C 0.000 4.000 5 C -0.547 4.547 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.178 1.178 11 H -0.213 1.213 12 H -0.213 1.213 13 C 0.016 3.984 14 N -0.349 5.349 15 C 0.342 3.658 16 O -0.462 6.462 17 C -0.115 4.115 18 C -0.093 4.093 19 C -0.082 4.082 20 C -0.080 4.080 21 N -0.472 5.472 22 S 0.944 5.056 23 N -0.475 5.475 24 C -0.107 4.107 25 C -0.034 4.034 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.004 0.996 33 H 0.005 0.995 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.255 0.745 38 H 0.190 0.810 39 H 0.192 0.808 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.554 10.666 28.167 31.051 hybrid contribution 0.273 -0.381 -2.996 3.032 sum -7.280 10.285 25.171 28.149 Atomic orbital electron populations 1.21730 0.93401 1.01112 1.01925 1.20709 0.96849 0.96364 0.92542 1.21730 1.00001 0.94512 1.01927 1.19000 0.94337 0.94268 0.92417 1.21636 1.30100 1.11967 0.90965 0.90716 1.25950 0.95791 0.95912 1.02752 1.70131 1.38975 1.25073 1.23925 0.85507 0.77987 0.78860 0.79346 1.17841 1.21278 1.21272 1.21298 0.98096 0.95550 0.83476 1.45833 1.52652 1.32035 1.04415 1.18437 0.79853 0.83569 0.83956 1.90790 1.39982 1.28083 1.87343 1.19588 1.01849 0.98266 0.91770 1.20995 0.94736 0.92469 1.01072 1.20456 1.00632 1.01355 0.85787 1.21628 0.98426 0.94059 0.93861 1.72071 1.31968 1.36101 1.07013 1.78181 1.16256 0.96252 1.14862 1.72064 1.30833 1.34746 1.09849 1.21131 1.01871 0.97664 0.90067 1.20577 0.96654 0.98265 0.87885 0.90681 0.92502 0.94438 0.94441 0.92504 0.90681 0.99557 0.99548 0.93293 0.93171 0.93167 0.74472 0.81017 0.80800 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 8.05 71.98 0.58 -3.24 16 2 C -0.06 -2.26 0.54 -52.18 -0.03 -2.29 16 3 C -0.12 -3.82 8.05 71.98 0.58 -3.24 16 4 C 0.04 1.84 4.04 29.85 0.12 1.96 16 5 C -0.51 -26.47 7.65 25.60 0.20 -26.27 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -56.58 13.29 21.44 0.28 -56.29 16 9 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 10 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.14 4.67 4.56 86.38 0.39 5.06 16 14 N -0.70 -17.38 4.90 -466.14 -2.29 -19.66 16 15 C 0.55 15.39 7.76 86.74 0.67 16.06 16 16 O -0.58 -21.51 16.26 -3.97 -0.06 -21.57 16 17 C -0.10 -2.23 5.85 -20.22 -0.12 -2.35 16 18 C -0.07 -0.95 9.39 22.17 0.21 -0.74 16 19 C -0.06 -0.79 10.06 22.46 0.23 -0.56 16 20 C 0.08 1.42 7.16 42.05 0.30 1.72 16 21 N -0.62 -10.49 11.43 -72.61 -0.83 -11.32 16 22 S 0.90 11.05 23.60 -56.49 -1.33 9.71 16 23 N -0.62 -12.50 11.45 -72.80 -0.83 -13.33 16 24 C 0.05 1.04 7.15 41.88 0.30 1.34 16 25 C -0.01 -0.18 9.65 22.99 0.22 0.04 16 26 H 0.07 1.61 6.86 -2.39 -0.02 1.59 16 27 H 0.06 1.89 6.62 -2.39 -0.02 1.88 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.89 6.62 -2.39 -0.02 1.88 16 31 H 0.07 1.61 6.86 -2.39 -0.02 1.59 16 32 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 33 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.42 7.28 4.10 -92.71 -0.38 6.90 16 38 H 0.17 1.24 6.29 -2.91 -0.02 1.22 16 39 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 40 H 0.14 3.59 7.57 -2.91 -0.02 3.57 16 Total: -1.00 -73.80 342.95 1.79 -72.01 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.71 Total: 8.00 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 4.11 Total: -12.46 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -3.66 Total: -100.61 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.06 Total: -21.57 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 11.05 SS G_CDS: -1.33 Total: 9.71 kcal Total: -73.80 1.79 -72.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360404585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.817 kcal (2) G-P(sol) polarization free energy of solvation -73.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds