Wall clock time and date at job start Tue Mar 31 2020 12:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99637 * 2 1 4 4 H 1.48495 * 109.47482 * 270.00636 * 3 2 1 5 5 H 1.48497 * 109.47028 * 30.00782 * 3 2 1 6 6 H 1.48502 * 109.47104 * 150.00187 * 3 2 1 7 7 C 1.37879 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00105 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99915 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00065 * 270.00053 * 10 9 7 12 12 C 1.53008 * 109.46734 * 269.99779 * 11 10 9 13 13 C 1.53002 * 117.49674 * 243.62149 * 12 11 10 14 14 C 1.53002 * 117.49470 * 174.99879 * 12 11 10 15 15 C 1.34779 * 119.99957 * 89.99722 * 10 9 7 16 16 O 1.21279 * 119.99898 * 0.02562 * 15 10 9 17 17 C 1.50698 * 119.99881 * 180.02562 * 15 10 9 18 18 C 1.50698 * 109.47187 * 180.02562 * 17 15 10 19 19 C 1.30907 * 121.84133 * 84.97315 * 18 17 15 20 20 S 1.75785 * 109.82109 * 180.02562 * 19 18 17 21 21 C 1.76249 * 90.69696 * 0.02562 * 20 19 18 22 22 N 1.32361 * 141.95163 * 180.02562 * 21 20 19 23 23 C 1.33874 * 109.13546 * 179.97438 * 22 21 20 24 24 C 1.34330 * 108.38786 * 0.02562 * 23 22 21 25 25 N 1.35143 * 109.22650 * 0.02562 * 21 20 19 26 26 H 0.97000 * 120.00624 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47306 * 59.99240 * 9 7 2 28 28 H 1.09010 * 109.46796 * 299.99565 * 9 7 2 29 29 H 1.09002 * 109.46929 * 29.99482 * 11 10 9 30 30 H 1.08998 * 109.47328 * 149.99899 * 11 10 9 31 31 H 1.09004 * 115.54950 * 29.33104 * 12 11 10 32 32 H 1.08996 * 117.49796 * 359.97438 * 13 12 11 33 33 H 1.08996 * 117.49564 * 145.02109 * 13 12 11 34 34 H 1.08997 * 117.49286 * 214.97696 * 14 12 11 35 35 H 1.08997 * 117.50174 * 359.97438 * 14 12 11 36 36 H 1.08997 * 109.47756 * 59.99218 * 17 15 10 37 37 H 1.09007 * 109.47103 * 299.99782 * 17 15 10 38 38 H 1.07999 * 125.09482 * 0.02562 * 19 18 17 39 39 H 1.08000 * 125.80396 * 180.02562 * 23 22 21 40 40 H 1.08001 * 126.43506 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.2447 -3.2654 1.2678 12 6 5.6899 -3.0248 1.7088 13 6 6.6135 -4.2415 1.7970 14 6 6.1111 -3.5680 3.0757 15 6 4.2241 -3.2107 -1.1682 16 8 4.0219 -2.6391 -2.2185 17 6 4.7260 -4.6317 -1.1680 18 6 4.8936 -5.1054 -2.5888 19 6 5.9844 -4.8669 -3.2722 20 16 5.8415 -5.5567 -4.8827 21 6 4.2269 -6.1550 -4.5066 22 7 3.2149 -6.8258 -5.0337 23 6 2.2352 -6.9262 -4.1269 24 6 2.6328 -6.3068 -3.0032 25 7 3.9085 -5.8100 -3.2393 26 1 -0.4851 0.8400 0.0004 27 1 3.8752 -0.6802 0.8888 28 1 3.8745 -0.6799 -0.8913 29 1 3.5642 -2.8811 2.0276 30 1 4.0777 -4.3347 1.1378 31 1 6.1294 -2.0813 1.3849 32 1 6.1913 -5.2133 1.5413 33 1 7.6608 -4.0986 1.5309 34 1 6.8280 -2.9821 3.6509 35 1 5.3586 -4.0963 3.6610 36 1 4.0081 -5.2706 -0.6538 37 1 5.6864 -4.6778 -0.6544 38 1 6.8435 -4.3272 -2.9020 39 1 1.2865 -7.4211 -4.2738 40 1 2.0672 -6.2132 -2.0879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360500057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:34 Heat of formation + Delta-G solvation = 96.922576 kcal Electronic energy + Delta-G solvation = -24432.981422 eV Core-core repulsion = 20956.332535 eV Total energy + Delta-G solvation = -3476.648887 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.58911 -39.62372 -37.53360 -36.68666 -34.65650 -32.62542 -31.32916 -30.36240 -28.86523 -27.82721 -26.30217 -23.59026 -22.49529 -22.41922 -21.68519 -20.93525 -20.14743 -18.74777 -18.05236 -17.07165 -17.00499 -15.88242 -15.80687 -15.36389 -15.16553 -14.98516 -14.82858 -14.38202 -14.10445 -13.83250 -13.45833 -13.15603 -12.79343 -12.65734 -12.42592 -12.28467 -11.71804 -11.62680 -11.61308 -11.59118 -11.24556 -11.01693 -10.65558 -10.47484 -10.41576 -10.21533 -10.16647 -10.05336 -9.62829 -9.27106 -8.82784 -8.66114 -7.91775 -7.61560 -6.15971 -4.15643 0.90495 0.98078 1.60606 2.21289 2.60460 2.96628 3.08468 3.23195 3.28784 3.31297 3.52869 3.76794 4.31499 4.32760 4.58414 4.61933 4.77538 4.81560 4.89029 5.08016 5.14980 5.17805 5.19402 5.23449 5.29946 5.48897 5.50431 5.61405 5.67015 5.77956 5.87707 5.99152 6.10341 6.22736 6.54532 6.57785 6.81979 6.86167 7.16009 7.51684 7.74609 8.03269 8.36833 8.73369 8.86382 9.43592 10.97276 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.004562 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.278964 B = 6136.108015 C = 7509.091747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.217 3.783 10 N -0.586 5.586 11 C 0.139 3.861 12 C -0.170 4.170 13 C -0.187 4.187 14 C -0.173 4.173 15 C 0.511 3.489 16 O -0.526 6.526 17 C -0.088 4.088 18 C 0.112 3.888 19 C -0.214 4.214 20 S 0.180 5.820 21 C 0.137 3.863 22 N -0.463 5.463 23 C 0.014 3.986 24 C -0.044 4.044 25 N -0.395 5.395 26 H 0.265 0.735 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.193 0.807 39 H 0.186 0.814 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.489 -12.744 1.911 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.097 3.903 10 N -0.317 5.317 11 C 0.015 3.985 12 C -0.189 4.189 13 C -0.224 4.224 14 C -0.211 4.211 15 C 0.296 3.704 16 O -0.402 6.402 17 C -0.131 4.131 18 C 0.002 3.998 19 C -0.351 4.351 20 S 0.430 5.570 21 C -0.229 4.229 22 N -0.186 5.186 23 C -0.136 4.136 24 C -0.177 4.177 25 N -0.074 5.074 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.210 0.790 39 H 0.203 0.797 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 15.015 -12.629 -0.521 19.626 hybrid contribution -0.721 1.389 2.191 2.692 sum 14.294 -11.240 1.670 18.260 Atomic orbital electron populations 1.69885 1.06205 1.27099 1.50137 1.24844 0.94753 0.98947 0.94323 0.86866 0.80169 0.83844 0.78910 1.19896 1.20975 1.19047 1.21272 0.89069 0.94817 1.51827 0.90842 1.19695 0.95757 0.77362 0.97483 1.47833 1.63883 1.15915 1.04027 1.21100 0.93396 0.96718 0.87266 1.22951 0.96714 0.98548 1.00692 1.23088 0.99704 0.96908 1.02719 1.22904 1.03591 1.03951 0.90636 1.19922 0.78928 0.87044 0.84464 1.90739 1.51393 1.67342 1.30769 1.20658 1.05121 0.96582 0.90743 1.18345 0.87597 0.97706 0.96184 1.24675 1.03121 1.09619 0.97696 1.84485 1.03001 1.57478 1.12046 1.26193 1.03191 1.07085 0.86402 1.70571 0.98990 1.18992 1.30087 1.22362 0.99196 1.02913 0.89111 1.22843 0.84843 1.06345 1.03668 1.43690 1.13302 1.38339 1.12047 0.92465 0.94998 0.94549 0.88918 0.91219 0.87332 0.88809 0.88964 0.88863 0.88555 0.87869 0.86180 0.78997 0.79738 0.80151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 7 C -0.53 -14.75 9.94 -34.44 -0.34 -15.10 16 8 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.22 5.03 4.23 -5.20 -0.02 5.01 16 10 N -0.59 -10.90 2.46 -175.05 -0.43 -11.33 16 11 C 0.14 1.92 5.49 -4.04 -0.02 1.90 16 12 C -0.17 -1.91 5.95 -90.61 -0.54 -2.45 16 13 C -0.19 -1.59 9.18 -26.73 -0.25 -1.83 16 14 C -0.17 -1.57 10.25 -26.73 -0.27 -1.84 16 15 C 0.51 9.50 7.67 -10.99 -0.08 9.41 16 16 O -0.53 -12.39 15.61 5.56 0.09 -12.30 16 17 C -0.09 -1.15 4.56 -29.04 -0.13 -1.28 16 18 C 0.11 1.61 5.24 -81.75 -0.43 1.18 16 19 C -0.21 -2.66 10.81 29.04 0.31 -2.34 16 20 S 0.18 2.30 23.37 -107.50 -2.51 -0.22 16 21 C 0.14 2.24 8.93 -88.71 -0.79 1.45 16 22 N -0.46 -7.85 11.33 -13.56 -0.15 -8.00 16 23 C 0.01 0.20 11.82 -18.04 -0.21 -0.02 16 24 C -0.04 -0.65 11.97 -15.71 -0.19 -0.84 16 25 N -0.39 -6.26 3.19 -59.54 -0.19 -6.45 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 28 H 0.04 0.91 6.85 -51.92 -0.36 0.56 16 29 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.07 0.79 6.17 -51.93 -0.32 0.46 16 31 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.09 0.69 7.87 -51.93 -0.41 0.29 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.19 7.40 -51.93 -0.38 0.81 16 37 H 0.12 1.17 6.83 -51.93 -0.35 0.81 16 38 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.19 1.99 8.06 -52.49 -0.42 1.56 16 40 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -35.99 353.08 -10.00 -45.99 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.16 Total: 1.64 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.07 Total: -4.73 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.00 Total: -52.18 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.51 Total: -0.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.99 -10.00 -45.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360500057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.911 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds